TCONS_00053391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053391
Unique NameTCONS_00053391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length859

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053391 ID=TCONS_00053391|Name=TCONS_00053391|organism=Clytia hemisphaerica|type=transcript|length=859bp
tcgcgaaattaaattccgcgaaatttgccattttgaaactctgattcgcg
aaattaaattccgcgaaaatttcttcccttaaggtagttgaAAAGAACCC
TTGGTCAGGCCATGCAACGCAAGAAGGATTGGCTAGTCAGTCTGAGGTGC
TGTAATGTTGATAGATcaggaattgttttttttaactgTGGTCATCTGGA
TTGTAGGAAAATGTGTATTGAGaattatttctttaatttaGAAAAATGTA
AAAATCAAATTTGATAGAAAATATCAGCAACATCATGTTGCAAGCAACTA
ATGTCAATGTTCAGCATTTTGACTATATATTATTATTCATCAACAACTTT
GAAATCGCTCAAAGAAAGGCTGTTGTTGGATGTTGGATGGAAAATATGTG
TCCTATTTAATTTGAATGATCATATTACTAAAATTAAAGTAATTGGAAAC
CATAAGACAAAGTTTCGACATCAATACAATAATGGCATGGAAATTGTGGA
CAATAAAATATAGACAGCAatgaaaagtataaaaaacTTCCCTTAACCAT
TGGGCTATGGAAAAAATTGTCCTCATGAAGTTGATGAATTCAATGTAGAA
CTAGaagaaatatatataatatatatactTATATATGAAGTTATACTATA
tgaatttatttcttttttaggaaTGCCTATACAGTTTTCAAGACTTACTA
TTTCTTTCCTCCTATTGTTAAATCTTGCTTTCGTTGATTTATGATCCAAT
GTTTagtgttgtttttctttctcgGTTTTTGGGTATATCTCTATAATATA
TAACATTCTCTTTCTATAATGCACTACTTGCCATTCCACATTTTGTGAAT
Caaatatat
Run BLAST on NCBI

transcript from alignment at scaffold_229:3909..4767

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053391 ID=TCONS_00053391|Name=TCONS_00053391|organism=Clytia hemisphaerica|type=transcript|length=859bp|location=Sequence derived from alignment at scaffold_229:3909..4767 (Clytia hemisphaerica)
atatatttGATTCACAAAATGTGGAATGGCAAGTAGTGCATTATAGAAAG
AGAATGTTATATATTATAGAGATATACCCAAAAACcgagaaagaaaaaca
acactAAACATTGGATCATAAATCAACGAAAGCAAGATTTAACAATAGGA
GGAAAGAAATAGTAAGTCTTGAAAACTGTATAGGCAttcctaaaaaagaa
ataaattcaTATAGTATAACTTCATATATAagtatatatattatatatat
ttcttCTAGTTCTACATTGAATTCATCAACTTCATGAGGACAATTTTTTC
CATAGCCCAATGGTTAAGGGAAgttttttatacttttcatTGCTGTCTAT
ATTTTATTGTCCACAATTTCCATGCCATTATTGTATTGATGTCGAAACTT
TGTCTTATGGTTTCCAATTACTTTAATTTTAGTAATATGATCATTCAAAT
TAAATAGGACACATATTTTCCATCCAACATCCAACAACAGCCTTTCTTTG
AGCGATTTCAAAGTTGTTGATGAATAATAATATATAGTCAAAATGCTGAA
CATTGACATTAGTTGCTTGCAACATGATGTTGCTGATATTTTCTATCAAA
TTTGATTTTTACATTTTTCtaaattaaagaaataattCTCAATACACATT
TTCCTACAATCCAGATGACCAcagttaaaaaaaacaattcctgATCTATC
AACATTACAGCACCTCAGACTGACTAGCCAATCCTTCTTGCGTTGCATGG
CCTGACCAAGGGTTCTTTtcaactaccttaagggaagaaattttcgcgga
atttaatttcgcgaatcagagtttcaaaatggcaaatttcgcggaattta
atttcgcga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033704XLOC_033704Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053391-exon-scaffold_229-1491911889:3909..4767TCONS_00053391-exon-scaffold_229-1491911889:3909..4767Clytia hemisphaericaexon
TCONS_00053391-exon-scaffold_229-1510915933:3909..4767TCONS_00053391-exon-scaffold_229-1510915933:3909..4767Clytia hemisphaericaexon
TCONS_00053391-exon-scaffold_229-1575043694:3909..4767TCONS_00053391-exon-scaffold_229-1575043694:3909..4767Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_229supercontigscaffold_229:3909..4767 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.12435	5.05656	3.602	2.32976	10.954	4.47778	6.27164	7.0961	5.73149	3.99351	4.21788	3.32751	3.59265	3.39221	5.57077	6.05031	10.3798	8.91565	4.8263	6.53938	21.185	17.7475	10.089	10.9329	0.645285	1.15314	8.71765	6.2361	9.35556	6.75984
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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