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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053410 ID=TCONS_00053410|Name=TCONS_00053410|organism=Clytia hemisphaerica|type=transcript|length=2756bp
AAATTATTCCGTTTTAATTATAGGATAGCAGCTATCAACCAATCATCTCG
AAAAAGAGAAAACGAAGAACAAACAAAGCTATACTGAAGATGAGTAAACG
ATAATTGCTTTCAAAGTTCGTCGCAAAATTTCTTTCAGCTCttgcaaaaa
aaatacaaacaaatcTGAAAAGAAAGGTCATGTgaacttcaaataaaaat
aaactgtTCTAAATGAATTCCTAAAATGTACATTGGCAGTTGGAATAGGA
TTTGATGTATTTGATCGAAAATTCTAGTAAATGATTTTGGATGTTTCATT
TTATGGATAAAATGATGAAAGAAGTGAAGCCATTTGAAAACGACATGACA
GGgggaaaacaaaacaaagagaatATGACAACAAATTTCTTAAACGAAGG
AGAGGATATTGGAAATGAGCCTGTAAATTTAACAAAGCCTAACCTGAACT
CAACTTCTCTCTCATCCGAGCCGTTAGGAGGTGATCATGAACGCGTAAAT
CATGGAAAGAAAAGAGTTAGCTGGGCTCAGGATAATGAAGAAGCAACACC
GCATGATGAGAAAGAAAAGGCTTTAAAGAAACGTGTCTTTTGTATCATGT
TAACGTTATACGCACTGGCTTTTCTGGCTTCATTTGCTTACTGGGTCCAG
AGCGGTGTTTTACCATACCTCACACGTCGCGTTGGAATGACTGCAGAGTT
GTTTGGACTTATGGAATCGAGTTATGCATTGTATCAAATGATCACGTCAC
CTATATATGGTCGCCTTGGTGATATATTTGGAATTCGGATTTTATACATG
TTATCTGAGATTTGTAGTTCTATAACGTTCGGCTCTTTAGCTTTTGCGAA
TAGTGTTCCTGCTTTATTTCTGACTCGTGTGCCGGCACTTTTTATGCATA
GTGTTCAATGTTCTTATATGATTCTCACTGATATCTCAACCAAGAAAAGA
CGGGCGGATCTGATTGGTAAGTTGGGCGTTTTACATGGCCTTGGTATGAT
TTGTGGATCAGTAACGGGCGGTCTTATAACCCACGCCTTCGATGAACAAA
CAGCCGCCATTGTTGCTGCAATATCGAATTTACTTTCTGTATTGATCGTC
ATTATTTTCATTCCACAAAATACTAAAGATATTCGAAGACTAGTGACCGA
GCTACAAGAATGTGATGCCTCACCGAGGCATGAGGTAAAACCTACAGTTA
ATAAATGTGATGAAACCTTTGAGAAAACCGAAATACGAAATACACCAACT
AAAAACACTACATCACCTCAAAAACGAAAAAGGGCACTATCAAGAGGAAG
TGATCAAAACAGTAAGAATATTGAATCTGAAAATGCTCAGTGTAGCAGTG
CAATGTCACCAGAACATAACAAAAAATTTCACCAAGAAAGTGAAGTTGCC
AGTACAGAAACCGATATACAATCAACGACTAAAGTCACCACAGATGACCA
CGAACAACAAATGAACCAAGTGACCATGAACCAAAACAATCGAAATGAAC
ACAAcaatgaaaacgaaagtgaaagtatacCAACATTCAAAGCAATGATT
GCTGTATTACAATTCAAAAACGTGAAATTTTTACTCCTCATAAAAATCAT
CATAGCTTTTCCATTTTCTCTCTTATACTCGATGTTCTCGATGGCGATAA
TGGATTACTATCATCTTGGTCCGCGCGTTAACGGCTTGATCCTAGGCTAT
ATTGGCATCTTAACTATCGTTGTTCAAGGTGTCATAGTTGGTTTATTTAC
TAAAAGGTTCACAGATGCTTTTATTGTCAAGACGATGATTTTTGTCAATA
CTATTGGTTTTCTGTTCTTGATTGTATCGACAGAAATATTGATTCTTGTT
GTAGTTGTAATACCACTGGCAATCGGAGGTTCAGTATCGCATATAGTATT
ATTAGCAGTCATGACTAAAATTGTACCTCCTGAGTATAGTGGAACAGCTC
TTGGATTTATTTTCGCTTTACATGCTATTGTACGCGCGGTCACGCCAACT
TTGGGCGGGCTGACGTTTGCGACTATTGGTTGGCCGTTTTTTGGAGTCAT
CGGATACTTATTCCATTTTGTATTGTTGATCTACGTGACAATGTTTGGTA
GAGATGAACAATATGATAGCTGATTTCTTTTCTACAAGAATCACGAGAAG
AAATTACATTCAGACAATTCGCtcaattctcaaaattttcaatccaccaa
aattaaatatttcaatcaaTATGAGTCATTCGGCGAAATTCTGATTCTCA
AAGAACTATGAATATCCTTTGCTGAAGtctttgtactagtaatctcatgg
tttggattgaaattcTGATAATTCTGAAAGACGTCAATTTAGCAATGGAA
ATCAATCTGGAACTTTTAAAAAAGGTCTCAAAAAAAGTCATAGAAACACG
AATCGAGTTTTAATCTGTTAACCAAATACAAAATGATGACTGTATTCTTA
TGAAATTCTGTGAAATTCACCCTAGAGGGTATTCTTAGGGTATTCTTACA
ATTTGGCCAATTTTCACCTTGATATTCTTATAAAAGATATTCTTATAAAA
AAAGCGTGTATTCCATTTTAGTAAGAAATTCGAAAAAGGTGATGAATTTC
CAAAGGATGGAAATTTCATTTTTGTGGGAAATTACAAAATCTCGGAGGGA
AATTACAAAATCTCGGAGGGAAATTACAAAAGCTCGGAGGGGCTTAAATT
ACTCTCTTTAATTCGAATCTTTCTTTAATTCCAATAAATTTTTTGGTCCC
TTGAAG Run BLAST on NCBI protein sequence of TCONS_00053410-protein >TCONS_00053410-protein ID=TCONS_00053410-protein|Name=TCONS_00053410-protein|organism=Clytia hemisphaerica|type=polypeptide|length=610bp
MFHFMDKMMKEVKPFENDMTGGKQNKENMTTNFLNEGEDIGNEPVNLTKP
NLNSTSLSSEPLGGDHERVNHGKKRVSWAQDNEEATPHDEKEKALKKRVF
CIMLTLYALAFLASFAYWVQSGVLPYLTRRVGMTAELFGLMESSYALYQM
ITSPIYGRLGDIFGIRILYMLSEICSSITFGSLAFANSVPALFLTRVPAL
FMHSVQCSYMILTDISTKKRRADLIGKLGVLHGLGMICGSVTGGLITHAF
DEQTAAIVAAISNLLSVLIVIIFIPQNTKDIRRLVTELQECDASPRHEVK
PTVNKCDETFEKTEIRNTPTKNTTSPQKRKRALSRGSDQNSKNIESENAQ
CSSAMSPEHNKKFHQESEVASTETDIQSTTKVTTDDHEQQMNQVTMNQNN
RNEHNNENESESIPTFKAMIAVLQFKNVKFLLLIKIIIAFPFSLLYSMFS
MAIMDYYHLGPRVNGLILGYIGILTIVVQGVIVGLFTKRFTDAFIVKTMI
FVNTIGFLFLIVSTEILILVVVVIPLAIGGSVSHIVLLAVMTKIVPPEYS
GTALGFIFALHAIVRAVTPTLGGLTFATIGWPFFGVIGYLFHFVLLIYVT
MFGRDEQYDS Run BLAST on NCBI transcript from alignment at scaffold_23:37050..39805 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053410 ID=TCONS_00053410|Name=TCONS_00053410|organism=Clytia hemisphaerica|type=transcript|length=2756bp|location=Sequence derived from alignment at scaffold_23:37050..39805 (Clytia hemisphaerica)
CTTCAAGGGACCAAAAAATTTATTGGAATTAAAGAAAGATTCGAATTAAA
GAGAGTAATTTAAGCCCCTCCGAGCTTTTGTAATTTCCCTCCGAGATTTT
GTAATTTCCCTCCGAGATTTTGTAATTTCCCACAAAAATGAAATTTCCAT
CCTTTGGAAATTCATCACCTTTTTCGAATTTCTTACTAAAATGGAATACA
CGCTTTTTTTATAAGAATATCTTTTATAAGAATATCAAGGTGAAAATTGG
CCAAATTGTAAGAATACCCTAAGAATACCCTCTAGGGTGAATTTCACAGA
ATTTCATAAGAATACAGTCATCATTTTGTATTTGGTTAACAGATTAAAAC
TCGATTCGTGTTTCTATGACTTTTTTTGAGACCTTTTTTAAAAGTTCCAG
ATTGATTTCCATTGCTAAATTGACGTCTTTCAGAATTATCAgaatttcaa
tccaaaccatgagattactagtacaaagaCTTCAGCAAAGGATATTCATA
GTTCTTTGAGAATCAGAATTTCGCCGAATGACTCATAttgattgaaatat
ttaattttggtggattgaaaattttgagaattgaGCGAATTGTCTGAATG
TAATTTCTTCTCGTGATTCTTGTAGAAAAGAAATCAGCTATCATATTGTT
CATCTCTACCAAACATTGTCACGTAGATCAACAATACAAAATGGAATAAG
TATCCGATGACTCCAAAAAACGGCCAACCAATAGTCGCAAACGTCAGCCC
GCCCAAAGTTGGCGTGACCGCGCGTACAATAGCATGTAAAGCGAAAATAA
ATCCAAGAGCTGTTCCACTATACTCAGGAGGTACAATTTTAGTCATGACT
GCTAATAATACTATATGCGATACTGAACCTCCGATTGCCAGTGGTATTAC
AACTACAACAAGAATCAATATTTCTGTCGATACAATCAAGAACAGAAAAC
CAATAGTATTGACAAAAATCATCGTCTTGACAATAAAAGCATCTGTGAAC
CTTTTAGTAAATAAACCAACTATGACACCTTGAACAACGATAGTTAAGAT
GCCAATATAGCCTAGGATCAAGCCGTTAACGCGCGGACCAAGATGATAGT
AATCCATTATCGCCATCGAGAACATCGAGTATAAGAGAGAAAATGGAAAA
GCTATGATGATTTTTATGAGGAGTAAAAATTTCACGTTTTTGAATTGTAA
TACAGCAATCATTGCTTTGAATGTTGgtatactttcactttcgttttcat
tgTTGTGTTCATTTCGATTGTTTTGGTTCATGGTCACTTGGTTCATTTGT
TGTTCGTGGTCATCTGTGGTGACTTTAGTCGTTGATTGTATATCGGTTTC
TGTACTGGCAACTTCACTTTCTTGGTGAAATTTTTTGTTATGTTCTGGTG
ACATTGCACTGCTACACTGAGCATTTTCAGATTCAATATTCTTACTGTTT
TGATCACTTCCTCTTGATAGTGCCCTTTTTCGTTTTTGAGGTGATGTAGT
GTTTTTAGTTGGTGTATTTCGTATTTCGGTTTTCTCAAAGGTTTCATCAC
ATTTATTAACTGTAGGTTTTACCTCATGCCTCGGTGAGGCATCACATTCT
TGTAGCTCGGTCACTAGTCTTCGAATATCTTTAGTATTTTGTGGAATGAA
AATAATGACGATCAATACAGAAAGTAAATTCGATATTGCAGCAACAATGG
CGGCTGTTTGTTCATCGAAGGCGTGGGTTATAAGACCGCCCGTTACTGAT
CCACAAATCATACCAAGGCCATGTAAAACGCCCAACTTACCAATCAGATC
CGCCCGTCTTTTCTTGGTTGAGATATCAGTGAGAATCATATAAGAACATT
GAACACTATGCATAAAAAGTGCCGGCACACGAGTCAGAAATAAAGCAGGA
ACACTATTCGCAAAAGCTAAAGAGCCGAACGTTATAGAACTACAAATCTC
AGATAACATGTATAAAATCCGAATTCCAAATATATCACCAAGGCGACCAT
ATATAGGTGACGTGATCATTTGATACAATGCATAACTCGATTCCATAAGT
CCAAACAACTCTGCAGTCATTCCAACGCGACGTGTGAGGTATGGTAAAAC
ACCGCTCTGGACCCAGTAAGCAAATGAAGCCAGAAAAGCCAGTGCGTATA
ACGTTAACATGATACAAAAGACACGTTTCTTTAAAGCCTTTTCTTTCTCA
TCATGCGGTGTTGCTTCTTCATTATCCTGAGCCCAGCTAACTCTTTTCTT
TCCATGATTTACGCGTTCATGATCACCTCCTAACGGCTCGGATGAGAGAG
AAGTTGAGTTCAGGTTAGGCTTTGTTAAATTTACAGGCTCATTTCCAATA
TCCTCTCCTTCGTTTAAGAAATTTGTTGTCATattctctttgttttgttt
tcccCCTGTCATGTCGTTTTCAAATGGCTTCACTTCTTTCATCATTTTAT
CCATAAAATGAAACATCCAAAATCATTTACTAGAATTTTCGATCAAATAC
ATCAAATCCTATTCCAACTGCCAATGTACATTTTAGGAATTCATTTAGAa
cagtttatttttatttgaagttcACATGACCTTTCTTTTCAgatttgttt
gtattttttttgcaaGAGCTGAAAGAAATTTTGCGACGAACTTTGAAAGC
AATTATCGTTTACTCATCTTCAGTATAGCTTTGTTTGTTCTTCGTTTTCT
CTTTTTCGAGATGATTGGTTGATAGCTGCTATCCTATAATTAAAACGGAA
TAATTT Coding sequence (CDS) from alignment at scaffold_23:37050..39805 >TCONS_00053410 ID=TCONS_00053410|Name=TCONS_00053410|organism=Clytia hemisphaerica|type=CDS|length=1833bp|location=Sequence derived from alignment at scaffold_23:37050..39805 (Clytia hemisphaerica)
TCAGCTATCATATTGTTCATCTCTACCAAACATTGTCACGTAGATCAACA
ATACAAAATGGAATAAGTATCCGATGACTCCAAAAAACGGCCAACCAATA
GTCGCAAACGTCAGCCCGCCCAAAGTTGGCGTGACCGCGCGTACAATAGC
ATGTAAAGCGAAAATAAATCCAAGAGCTGTTCCACTATACTCAGGAGGTA
CAATTTTAGTCATGACTGCTAATAATACTATATGCGATACTGAACCTCCG
ATTGCCAGTGGTATTACAACTACAACAAGAATCAATATTTCTGTCGATAC
AATCAAGAACAGAAAACCAATAGTATTGACAAAAATCATCGTCTTGACAA
TAAAAGCATCTGTGAACCTTTTAGTAAATAAACCAACTATGACACCTTGA
ACAACGATAGTTAAGATGCCAATATAGCCTAGGATCAAGCCGTTAACGCG
CGGACCAAGATGATAGTAATCCATTATCGCCATCGAGAACATCGAGTATA
AGAGAGAAAATGGAAAAGCTATGATGATTTTTATGAGGAGTAAAAATTTC
ACGTTTTTGAATTGTAATACAGCAATCATTGCTTTGAATGTTGgtatact
ttcactttcgttttcattgTTGTGTTCATTTCGATTGTTTTGGTTCATGG
TCACTTGGTTCATTTGTTGTTCGTGGTCATCTGTGGTGACTTTAGTCGTT
GATTGTATATCGGTTTCTGTACTGGCAACTTCACTTTCTTGGTGAAATTT
TTTGTTATGTTCTGGTGACATTGCACTGCTACACTGAGCATTTTCAGATT
CAATATTCTTACTGTTTTGATCACTTCCTCTTGATAGTGCCCTTTTTCGT
TTTTGAGGTGATGTAGTGTTTTTAGTTGGTGTATTTCGTATTTCGGTTTT
CTCAAAGGTTTCATCACATTTATTAACTGTAGGTTTTACCTCATGCCTCG
GTGAGGCATCACATTCTTGTAGCTCGGTCACTAGTCTTCGAATATCTTTA
GTATTTTGTGGAATGAAAATAATGACGATCAATACAGAAAGTAAATTCGA
TATTGCAGCAACAATGGCGGCTGTTTGTTCATCGAAGGCGTGGGTTATAA
GACCGCCCGTTACTGATCCACAAATCATACCAAGGCCATGTAAAACGCCC
AACTTACCAATCAGATCCGCCCGTCTTTTCTTGGTTGAGATATCAGTGAG
AATCATATAAGAACATTGAACACTATGCATAAAAAGTGCCGGCACACGAG
TCAGAAATAAAGCAGGAACACTATTCGCAAAAGCTAAAGAGCCGAACGTT
ATAGAACTACAAATCTCAGATAACATGTATAAAATCCGAATTCCAAATAT
ATCACCAAGGCGACCATATATAGGTGACGTGATCATTTGATACAATGCAT
AACTCGATTCCATAAGTCCAAACAACTCTGCAGTCATTCCAACGCGACGT
GTGAGGTATGGTAAAACACCGCTCTGGACCCAGTAAGCAAATGAAGCCAG
AAAAGCCAGTGCGTATAACGTTAACATGATACAAAAGACACGTTTCTTTA
AAGCCTTTTCTTTCTCATCATGCGGTGTTGCTTCTTCATTATCCTGAGCC
CAGCTAACTCTTTTCTTTCCATGATTTACGCGTTCATGATCACCTCCTAA
CGGCTCGGATGAGAGAGAAGTTGAGTTCAGGTTAGGCTTTGTTAAATTTA
CAGGCTCATTTCCAATATCCTCTCCTTCGTTTAAGAAATTTGTTGTCATa
ttctctttgttttgttttcccCCTGTCATGTCGTTTTCAAATGGCTTCAC
TTCTTTCATCATTTTATCCATAAAATGAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053410-exon-scaffold_23-1491911889:37050..39805 | TCONS_00053410-exon-scaffold_23-1491911889:37050..39805 | Clytia hemisphaerica | exon |
| TCONS_00053410-exon-scaffold_23-1510915933:37050..39805 | TCONS_00053410-exon-scaffold_23-1510915933:37050..39805 | Clytia hemisphaerica | exon |
| TCONS_00053410-exon-scaffold_23-1575043694:37050..39805 | TCONS_00053410-exon-scaffold_23-1575043694:37050..39805 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_23 | supercontig | scaffold_23:37050..39805 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005215 | transporter activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0005215 |
transporter activity |
Blast
The following BLAST results are available for this feature:
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