TCONS_00053397 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00053397
Unique Name	TCONS_00053397
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	990

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_23:64696..71720+

transcript sequence

>TCONS_00053397 ID=TCONS_00053397|Name=TCONS_00053397|organism=Clytia hemisphaerica|type=transcript|length=990bp
CACGGATAATAATAAAAGATACTACATTAAAGAAAAGGAAAGCTGAACAA
AAAACgacaataaaaatgaagaaatcttTTGTTCTTCTATTTCATTGGTT
TTTAAACCAAACAAAACATTtgaataaagaagaaaatgttgtttttaaag
aaagaaaaatgcttCTAAGGGAAAGATTTGAACCGGAAGAACTTGTTGGT
CCATAAGAAGAGAAGATGATTAACCACAGTGACTTAATTCAAATCTGCTT
CAATCGCATTATAACCGTTGATAAATCTTGAAGTCCAAACCCATAATGCA
TGTTGTTAGATGTCTTGTATTATGCTATCTATTTCAGGTATGTCTGCTGA
TTCCGTTATACACGTCTGAACACCACAATAACCATTATCTAACTCAAGAC
GAACTTTTAGAACTAGAAAATATGTTAGAAGAAATGTATTCTTATAAGAG
AGGAATTCCACATAGTTATCAAGGAAGAAGTAGTAATAGCGGATGTAACC
AACCTAAAATGAAATGTCATGGCCGGCATTATCCAGGCAAAGGTCGGAAG
CGTGTGGTGTACGATATATTTGATCCTTGATTTAcgaaaatgttgaaagt
aataggataatatttgatattttttgatgattttgcaaTTATTGCATATT
AGAACAATATCTTGTGGTATATTTTTacgaccaaatttcatgttGGAAAG
ATGGTCTCGAACTAAAATATGCATTCTGACCATTATTGATACTTTCGTCC
AATTCAAGACATTTTAtatccattgagtttaaagcccgaagtgctagagt
agaatctctaacctttcccacgCAAGAAAaggtgaagccacttatttccc
atccagaacgtgCCTAGAAGGTGCCACAGTCATGatgacggattgtatct
agcggttcctttgtttttgaggactgcatttttttaaatctagcgataaa
ttttactatttatggctttatttcccatccaacagtctcg

Run BLAST on NCBI

transcript from alignment at scaffold_23:64696..71720+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00053397 ID=TCONS_00053397|Name=TCONS_00053397|organism=Clytia hemisphaerica|type=transcript|length=7025bp|location=Sequence derived from alignment at scaffold_23:64696..71720+ (Clytia hemisphaerica)
CACGGATAATAATAAAAGATACTACATTAAAGAAAAGGAAAGCTGAACAA
AAAACgacaataaaaatgaagaaatcttTTGTTCTTCTATTTCATTGGTT
TTTAAACCAAACAAAACATTtgaataaagaagaaaatgttgtttttaaag
aaagaaaaatgcttCTAAGGGAAAGATTTGAACCGGAAGAACTTGTTGGT
CCATAAGAAGAGAAGATGATTAACCACAGTGACTTAATTCAAATCTGCTT
CAATCGCATTATAACCGTTGATAAATCTTGAAGTCCAAACCCATAATGCA
TGTTGTTAGATGTCTTGTATTATGCTATCTATTTCAGGTAAGCTACtata
ataaatttattttgtgtttACAATTTGGATAGTCTGTGGTTACGAATTTG
GTTTACTGAAGAGGAAATCGAAACCACTTTCACTCCTTTCTCTTGATTTC
TTCGCTTTAGCCTTTTTTTCAGAATCGCTGAGATTGAAACACTAAGGATA
TCAAATGATCATTTCCAAGTCCTTCTTAATTCGCGGCTTTGGGTTGATCT
CTTGTCTTTGCGCACCAGTAATTTTGCGGTTGATTGGATTGACTGATCTT
GTAAtcgtttattatattttgaaaccttcggatgGATGAGGCAGATACCA
TTTTCTCAGATACCAAATCCATTCATAGAACTTGAATTACTTATAATGTC
TATGTATATAACCAGGTCAAGACTTTGAGCTGTTTTACTCCTACTGTATT
TACATTTTGAAGTATATGTTTGTATGAACGTTCTTTTGAACTTGCCGatt
ggttttctttttacacGAAGAAAAATGATTCataatactatttttttcat
gttgatgataaCCACAAATAAATTCACTACGGTAATTAGACCATTTTTTT
ggaaacatttttctgtaaattgaTACCTCTCTAGATTTTGAGACGAAGAA
GCCAtaagaaaatattccaaaagaTTAGGACCTCGATGACACCATCTGAA
ccaaaagatttttgaagaatctttcgttcttcttcttcttttttcatcaa
ggctttcaaattttcagtccCAGGAATAGACGGCCTTACAGAAAATCCCC
ACATTTATGTCAAAATTCTGTTGGCTAGATTAGGAGAGATTTATATAGAT
ATGCATCGCTATGGTAAGAGTCCGTTTTATTTGTGGTTCGAGGGTGGGCA
TACTTAGTTCGCTTATTGGCTTATAAAGAACTTAGATTTACCCTTATAAC
CTGAGAGTACGATGGGATTGTTTTCAATGTATTCTTAGGTGCTTGCCAAG
ATTGAGCCTCGTCTCCTTATTACTTTAATCGGATCAACTTTCGCGAGATT
GAATTTTgtgatttcgcgaatttttgccatttttgcgaaatttaaaCTTG
CGAAAACGCGTGTGTTTCCTGACtagcgaaattaaatccagcacaaaatt
ttttaagccgCATTTTTTGCGGAGAAAACATTCCAAAGTCTCCACTTGTG
GCAAAAAGgctatttttcagctgttttcaggccttttcgcaaaattaaat
ccacgcgaaatttttcaaaattctgactCTCGAAATTAAATCTAgcaaat
ttcgcgacttttttcgcgaaatttaatgtGATTAAAGTaagttgttcttt
taaaaacctgCATGTTGTGACCTTTACATAATAAAAAATCTGAGACCACA
CGTCTTTTCATTTTGTTGAGAATAGACCTTCGTGAACCAGGAATCATAAA
GATGTTTTATGcaaggccaatttaatttgttgttttacgggccaagctac
cccaAAAAGAGGGTCAGTCGGTCGGCGTTACAATAAatataaaagtagaa
tttcacctataaaatctcctacaaaaaagtaataaaaactacatcttgac
aaaaatgcggaaaagaaaataaaaagacacaaaaagctcgaattcatgga
aaaaatgaatattgaacataaaattctcaaaatcttggaaaaactaccaa
acattTGGCAGTTGTAAAGCAATGGAAGTAAAAATGTactatgaaaataa
attttatttctatttcgatttttggaattttgtggTCGGTCGGGCTCGtc
aaacaactaatcaaattggtctcgccttatgtAAGCTTTACTTCATCAAT
CTGCTTCCTTACGTAACCTATAGCGAAATGTTTAGTATGTAGGTTTATTA
TTTGGAACCTTTTCAACAATGTCTCTACTTTTAAAGTTGGGGAACTAAAT
TTTGTGTGTCCAGGAAATAAATcagtctacacgttttttttaaataaaaa
atccatAATTTTGGTAGACTTCGGAtattgttaactttttgagtttgaag
ctTAAAGAtgtttaacatgttcttattttcacctaTTTTCACCTTATTTT
CACAAgtgtttttgtgcaatttcctaaaaaattggtttttacagtatgca
aagccttaaaatgttcttaacttgttattAACATTTTGGACATCGAaacc
ttatgctcttatatagtttgtttttataaaaaacatgtatattgtAGATA
AATTCACATTCTAAGGTCTCAATTGAGAAGTGTGGAAACACTTATTTCAA
CTATGCTACCATCTTTAATATTTTAAACTCGATTATCAATTTTTCAATCA
TTAAACTGAGGTTAAgtataccaggataatcacaaAATTGTAATAGGCTA
gtcaaaatacgaaatttgattggttgaaactcactagcctgttaaatatt
ttcgttcgtcgtcgtgattatacCCATTTATTTAACCTCACTATTATGTT
TGAACCAAtcaagtcaaatgaaaattggCACAAAGGCACCTCGTTAtgaa
aggatgattttttttctcaaaaaatgcatAGTCATGTTGATTTTATCAGC
AAAAAGGTCATTGGAAATTACCACTTTGAGAGATAATTCCCCTCAGAACC
CTTTCACCACGCTGTTGCTCCAGACAAGTTTCCTGGTTGTCGTCACTAAA
ATTAATGTTGTTGCAATCTTAAATCCAAATTTATCTTAAGTTACCATGGT
TACATGGAGCCAAGAgtcaaaaataagaatataACTATACACAACGGTTC
ATATTAGCTGTTTGCATTTTCAAACACATATCATTTTGTCTGaagtttta
ttgttttatgTATACTTGTTCCTTCGTATAAAAACCTTGGTGAATCCTAA
ATTTTTATTCTATAATAATGTTAATTGTTTGAACTGAAGTCAGTATTACA
AAACCATCAGACCGATTTATCTTTATTTTCTGATAACTTGATAAATTAGG
GAACCCCTCAAGAAATCTTAAAACAAATTTAGAACTGGATAACTAGCTTC
ACCTCCTCCCCCAGTGGTAATAGCGAGTTCATGTATTTGCACTTATGAGG
ACGGCAGAGCGATTTGGAACAACCCACAGTTTTGACTCGCAAAAATTAGG
ACGATAAAAGTGTTGTTACTGTCACCCTTAAttgatcaggatctagacaa
atcagaaCCTAACCGTCTCCGTCACTGAAAAACATAGACacataaaaaaa
cttgaaatcgAAACTTGTCGAGCTAAACTTGAACTTATTCGTCAGCAAGC
TCGAATAGATCCACGACTCAAAGCTTTATACAAAGAGAGGCTTACTGAGT
ATAAAAAGACACTGAAACAAACCAAAAATAACTTCTTCAAGAAATCTTTA
TCGTCTAAAGATCCTAAAGCTGTATGGAACACCATCCATCGAGTACTGAA
CAACCAAAAGTCAAGAATCAACCACCATCCCTCCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcatcgaaac
cttatgttcttatatagtttgttcttataaaaacatgtatattGTAGATA
AATTCACATTCTAAGGTCTCAATTGAGAAGTGTGGAAACACTTATTTCAA
CTATGCAGCCATCTTTAATATTTTAAACTCGATTATCAATTTTTCAATCA
TATTAAACTGAGGTTATgtataccaggataatcacaaCGACGGTCGAAAA
TTGTAATAGGCTAgtcaaaatacgaaatttgattggttgaaactcactag
cctgttaaatattttcgttcgtcgtcgtgattataccgatttacttaacc
tcactattatgTTTGAACCAATCAAGTCAAATGATAATTACTTCAAGTTC
ATGAAAATTGGCACAAAGGCACCTCGTTATGAAAggagatgatgattttt
tttgcaaaaaatgcaTAGTCATGTTGATTTTATCAGCAAAAAGGTCATGG
GAAATTACCACTTTGAGAGAGAATTCCCCTCAGAACCCTTTCACCACGCT
GTTGCTCCAGACAAGTTTCCTGGTTGTCGTCATTAAAATTTAATGTTGTT
GTAATCTTAAATCCAAATTTATCTTAAGTTACCATGGTTACATGGAGCCA
AGAGTCAAAACTGTCACCCTTAATTGATCAGGGCGTAGCCAAATCAGAAc
ctaaccgtctccgtcgctgaaaaacataGACACATAAACTTTGACTGTGA
TTGATAAGGAGGGGTTTGTGCtatacggtgtgacgggattggcctgtttc
tagtacggtattacgggatttgacgacaAAAGAGACGgtaaaacggtatt
ttaaaatgagACGGTGATTATTTTTGTCGGTATTCCGGTATTTTAAAAAT
CGGTGTTACGGTGTTATATTATTGGGATTCCaaaattcagccaaaatttt
gattggaaaacggtattttgaaCTCCTACAACCCCCCTTTAAAACGCTAA
AGTGTGATAATTTTATCTCCCTCATATAATTTGCATACATGCTTATCCtc
gtttttcttctttattttataGGTATGTCTGCTGATTCCGTTATACACGT
CTGAACACCACAATAACCATTATCTAACTCAAGACGAACTTTTAGAACTA
GAAAATATGTTAGAAGAAATGTATTCTTATAAGAGAGGAATTCCACATAG
TTATCAAGGAAGAAGTAGTAATAGCGGATGTAACCAACCTAAAATGAAAT
GTCATGGCCGGCATTATCCAGGCAAAGGTCGGAAGCGTGTGGTGTACGAT
ATATTTGATCCTTGATTTAcgaaaatgttgaaagtaataggataatattt
gatattttttgatgattttgcaaTTATTGCATATTAGAACAATATCTTGT
GGTATATTTTTacgaccaaatttcatgttGGAAAGATGGTCTCGAACTAA
AATATGCATTCTGACCATTATTGATACTTTCGTCCAATTCAAGACATTTT
Atatccattgagtttaaagcccgaagtgctagagtagaatctctaacctt
tcccacgCAAGAAAaggtgaagccacttatttcccatccagaacgtgCCT
AGAAGGTGCCACAGTCATGatgacggattgtatctagcggttcctttgtt
tttgaggactgcatttttttaaatctagcgataaattttactatttatgg
ctttatttcccatccaacagtctcg

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033707	XLOC_033707	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00053397-exon-scaffold_23-1491911889:64696..65032	TCONS_00053397-exon-scaffold_23-1491911889:64696..65032	Clytia hemisphaerica	exon
TCONS_00053397-exon-scaffold_23-1510915933:64696..65032	TCONS_00053397-exon-scaffold_23-1510915933:64696..65032	Clytia hemisphaerica	exon
TCONS_00053397-exon-scaffold_23-1575043694:64696..65032	TCONS_00053397-exon-scaffold_23-1575043694:64696..65032	Clytia hemisphaerica	exon
TCONS_00053397-exon-scaffold_23-1491911889:71068..71720	TCONS_00053397-exon-scaffold_23-1491911889:71068..71720	Clytia hemisphaerica	exon
TCONS_00053397-exon-scaffold_23-1510915933:71068..71720	TCONS_00053397-exon-scaffold_23-1510915933:71068..71720	Clytia hemisphaerica	exon
TCONS_00053397-exon-scaffold_23-1575043694:71068..71720	TCONS_00053397-exon-scaffold_23-1575043694:71068..71720	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:64696..71720 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.530109	0.543852	0.399356	0	1.91421	1.0779	1.09079	1.04262	1.05463	0.67083	1.44673	0.996843	0.721886	0.440616	1.63653	1.0129	0	0.184058	0	0.626187	0.321925	0.396663	0.130262	0.436296	0.549156	1.40944	0.651763	0.23154	0.233797	0.0608329

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00053397 vs. Swiss-Prot (Human)

BLAST of TCONS_00053397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00053397 (transcript) - C. hemisphaerica