TCONS_00053412 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053412
Unique NameTCONS_00053412
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053412 ID=TCONS_00053412|Name=TCONS_00053412|organism=Clytia hemisphaerica|type=transcript|length=445bp
CATGTATTGAATTGAATCTGCTTTCTGTAAACATTAACTCTTGTGAAGAA
TAGCtcaaatattcaaatattcCAGACAATTTTCAGCACATTATACACAA
ATGTTGCGACACAGCAACTTTAAAGAACAGCCAGGATTTGAAAAGAGCTT
TATTCATAACATAACTTCAAGATAGATCTacattcaattaattttttgaa
cttCGCAAACTTTTGACTCATACTTACTTATTTGATATTTGATTTACGCG
CTGAAACCAGAAGatgaattttgatgaattgcaaaaaaaaacgaaagaag
ATTTTACTATTGGAACTATTTTATATCATATTGACTCTATCAAATATGCC
ACTATTTGTATTGTAAACAATTAGGGCAGTGGGAAAGATTTATGCTAGAT
TATTTGATGATTCTTTAGGGGAAAATCATCGAGCATCAAGCCTCT
Run BLAST on NCBI

transcript from alignment at scaffold_23:141904..142348

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053412 ID=TCONS_00053412|Name=TCONS_00053412|organism=Clytia hemisphaerica|type=transcript|length=445bp|location=Sequence derived from alignment at scaffold_23:141904..142348 (Clytia hemisphaerica)
AGAGGCTTGATGCTCGATGATTTTCCCCTAAAGAATCATCAAATAATCTA
GCATAAATCTTTCCCACTGCCCTAATTGTTTACAATACAAATAGTGGCAT
ATTTGATAGAGTCAATATGATATAAAATAGTTCCAATAGTAAAATcttct
ttcgtttttttttgcaattcatcaaaattcatCTTCTGGTTTCAGCGCGT
AAATCAAATATCAAATAAGTAAGTATGAGTCAAAAGTTTGCGaagttcaa
aaaattaattgaatgtAGATCTATCTTGAAGTTATGTTATGAATAAAGCT
CTTTTCAAATCCTGGCTGTTCTTTAAAGTTGCTGTGTCGCAACATTTGTG
TATAATGTGCTGAAAATTGTCTGgaatatttgaatatttgaGCTATTCTT
CACAAGAGTTAATGTTTACAGAAAGCAGATTCAATTCAATACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033719XLOC_033719Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053412-exon-scaffold_23-1491911889:141904..142348TCONS_00053412-exon-scaffold_23-1491911889:141904..142348Clytia hemisphaericaexon
TCONS_00053412-exon-scaffold_23-1510915933:141904..142348TCONS_00053412-exon-scaffold_23-1510915933:141904..142348Clytia hemisphaericaexon
TCONS_00053412-exon-scaffold_23-1575043694:141904..142348TCONS_00053412-exon-scaffold_23-1575043694:141904..142348Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:141904..142348 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.29319	0	0	0	0	0.966361	1.99033	1.9002	2.82444	3.19838	3.30391	3.8992	3.94552	5.71925	1.83213	2.14418	2.89173	57.0499	65.0497	29.9415	24.2462	22.7521	28.3635	0	0	28.0339	37.6181	2.50281	1.35998
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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