TCONS_00053416 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053416
Unique NameTCONS_00053416
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053416 ID=TCONS_00053416|Name=TCONS_00053416|organism=Clytia hemisphaerica|type=transcript|length=517bp
TTTGCTGATGATGTTTTACCTTTAATGGGTGTTGTCTGATGTCCCAACTT
CAATCTTCTTTTGGCTTTCAAAGCCTTTCGCATTGCTGGAGCAGCTTTCT
CAGCACCTTCCTCACCCTTTTTGAATAGTTCATTCCTACGTAATTCCAGC
CAttgtcttataaaaaaaagcatgaATTCTTAAATTCGCCCATTTCAAGA
AAATGGCTGATAGAATTTGACGAGCTAACGCTCGATTATGCAATCCAATG
GTTAAGGAATCCCATTTTTCTTGTAGCAAAACATTTTGCTTAAATCTCTC
AATAACAATTTTCCTCAAGTCATCGCCGCAGTATCGAATTAGCATATCTT
TGTCCAAAACAACtcttgccaaattttccattaATTTTACAAAGGCATAA
AAATCATCGGTTATCTTCAAAAGTCCTCCTATGTTGATTTGATCCACCCA
ATGACAGGTGAAATCATTCAAAGTAATTTGATCGCCGAGGTCATCATCAT
TTTTTGAAGCCAATTGC
Run BLAST on NCBI

protein sequence of TCONS_00053416-protein

>TCONS_00053416-protein ID=TCONS_00053416-protein|Name=TCONS_00053416-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
QLASKNDDDLGDQITLNDFTCHWVDQINIGGLLKITDDFYAFVKLMENLA
RVVLDKDMLIRYCGDDLRKIVIERFKQNVLLQEKWDSLTIGLHNRALARQ
ILSAIFLKWANLRIHAFFYKTMAGIT
Run BLAST on NCBI

transcript from alignment at scaffold_230:5334..5850

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053416 ID=TCONS_00053416|Name=TCONS_00053416|organism=Clytia hemisphaerica|type=transcript|length=517bp|location=Sequence derived from alignment at scaffold_230:5334..5850 (Clytia hemisphaerica)
GCAATTGGCTTCAAAAAATGATGATGACCTCGGCGATCAAATTACTTTGA
ATGATTTCACCTGTCATTGGGTGGATCAAATCAACATAGGAGGACTTTTG
AAGATAACCGATGATTTTTATGCCTTTGTAAAATtaatggaaaatttggc
aagaGTTGTTTTGGACAAAGATATGCTAATTCGATACTGCGGCGATGACT
TGAGGAAAATTGTTATTGAGAGATTTAAGCAAAATGTTTTGCTACAAGAA
AAATGGGATTCCTTAACCATTGGATTGCATAATCGAGCGTTAGCTCGTCA
AATTCTATCAGCCATTTTCTTGAAATGGGCGAATTTAAGAATtcatgctt
ttttttataagacaaTGGCTGGAATTACGTAGGAATGAACTATTCAAAAA
GGGTGAGGAAGGTGCTGAGAAAGCTGCTCCAGCAATGCGAAAGGCTTTGA
AAGCCAAAAGAAGATTGAAGTTGGGACATCAGACAACACCCATTAAAGGT
AAAACATCATCAGCAAA

Coding sequence (CDS) from alignment at scaffold_230:5334..5850

>TCONS_00053416 ID=TCONS_00053416|Name=TCONS_00053416|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_230:5334..5850 (Clytia hemisphaerica)
CAATTGGCTTCAAAAAATGATGATGACCTCGGCGATCAAATTACTTTGAA
TGATTTCACCTGTCATTGGGTGGATCAAATCAACATAGGAGGACTTTTGA
AGATAACCGATGATTTTTATGCCTTTGTAAAATtaatggaaaatttggca
agaGTTGTTTTGGACAAAGATATGCTAATTCGATACTGCGGCGATGACTT
GAGGAAAATTGTTATTGAGAGATTTAAGCAAAATGTTTTGCTACAAGAAA
AATGGGATTCCTTAACCATTGGATTGCATAATCGAGCGTTAGCTCGTCAA
ATTCTATCAGCCATTTTCTTGAAATGGGCGAATTTAAGAATtcatgcttt
tttttataagacaaTGGCTGGAATTACGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033723XLOC_033723Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053416-proteinTCONS_00053416-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053416-exon-scaffold_230-1491911889:5334..5850TCONS_00053416-exon-scaffold_230-1491911889:5334..5850Clytia hemisphaericaexon
TCONS_00053416-exon-scaffold_230-1510915933:5334..5850TCONS_00053416-exon-scaffold_230-1510915933:5334..5850Clytia hemisphaericaexon
TCONS_00053416-exon-scaffold_230-1575043694:5334..5850TCONS_00053416-exon-scaffold_230-1575043694:5334..5850Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_230supercontigscaffold_230:5334..5850 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.155337	0	0	0.138642	0	0	0	0	0.0766076	0	0	0	0.0864708	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053416 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top