TCONS_00053417 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053417
Unique NameTCONS_00053417
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length180

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053417 ID=TCONS_00053417|Name=TCONS_00053417|organism=Clytia hemisphaerica|type=transcript|length=180bp
CGGCTAATTTGAGGcctcaaagaaagaaaaatgtgtaCATGGAGGAGGTG
TGGATGATATAAATATATATTATTTCACTGGTTGACTTCAATACCCGCCC
CATGAACGAAGTTTCCCATTTCTTATTGACTTTACCACTCACTATTTTGT
AACTTGTTAATGAATGAAGACAACGTGCTG
Run BLAST on NCBI

transcript from alignment at scaffold_230:7346..7525

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053417 ID=TCONS_00053417|Name=TCONS_00053417|organism=Clytia hemisphaerica|type=transcript|length=180bp|location=Sequence derived from alignment at scaffold_230:7346..7525 (Clytia hemisphaerica)
CAGCACGTTGTCTTCATTCATTAACAAGTTACAAAATAGTGAGTGGTAAA
GTCAATAAGAAATGGGAAACTTCGTTCATGGGGCGGGTATTGAAGTCAAC
CAGTGAAATAATATATATTTATATCATCCACACCTCCTCCATGtacacat
ttttctttctttgaggCCTCAAATTAGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033724XLOC_033724Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053417-exon-scaffold_230-1491911889:7346..7525TCONS_00053417-exon-scaffold_230-1491911889:7346..7525Clytia hemisphaericaexon
TCONS_00053417-exon-scaffold_230-1510915933:7346..7525TCONS_00053417-exon-scaffold_230-1510915933:7346..7525Clytia hemisphaericaexon
TCONS_00053417-exon-scaffold_230-1575043694:7346..7525TCONS_00053417-exon-scaffold_230-1575043694:7346..7525Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_230supercontigscaffold_230:7346..7525 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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