TCONS_00053448 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053448
Unique NameTCONS_00053448
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053448 ID=TCONS_00053448|Name=TCONS_00053448|organism=Clytia hemisphaerica|type=transcript|length=3932bp
agcctgggaacctgttctggtctgtaaaatacacaaataggtgccaattt
tttgggtctgagatttaaatccatttttgacccctaaactacaaTTGTGC
AAAGTCTCATGCTTGCACCCCTTTGTGCACAATTTTTACACGATTAGACC
GTACTAATAATTACTGTATGATAAGTTTTAATTTAAcattcttatttatt
ttttttagaaataaaaatagaataGTGGCTAATGGAAGGGGAAACCATCA
AAGCAGAACCGGAAGATGCACCCCTCCCTCCACCCCCTATGCCTCCTATA
GTTAATGGGGTAGCCAGTAGTGGAGAAGAGGCAGCAAACATCAAGACAGA
GGACATCAAGATAGAGGAAGGAGACAAAGAAGAAGCAGTAAACGTTGGGA
ATGGTTTCACTGGGAAAGTGGTACGAATCAGCAATGTCTCTTCTGGAGCT
ACATTGCAACAATTAGCCACGTTATTTGGTTACTTGGGCACCATACAAGA
TATTCGAATGTATCCTACGGAAGAGAACCCAACCATCAAAATACGATTAT
GTTACATCAAATTCGACACCTCTGAACAATGTGGCGTTGCACAACATCTC
ACCAACACCGTTTTCATTGATAAACCACTCATTGTTGTTCCAATGAATCG
AGAAGAGATCCCAGAGGAGAAGGATTGCCAACATTTAATTTCCACTATCA
ATGCGTACGCCCTTGCAGCAGGGACAGGGTTCTTACCTCAATTCTTCCCT
CAAGACACGTCGAATGGTGCAGGATTGCCAGGACTTCCTCCACCACCGAT
AATCACCACAACCACTGATCCAGTAGAAATTGAAGAAATCAAACGAACAA
TCTTTGTGGAAGATATTGCGGATGATTTGTCGGCTGAGCAATTGATGGCA
TTTTTTTCCGGCGTTGGGGAAGTGAAGTATTTGAGATTCTCGAAAGGTGA
AGATGGAGACAGAAGATTTGCTCTTATCGAATTCTCCAACCTCGAATCTG
TTCCTACTGCTCTGCAGTATAATGGTGTTTTGTTTGGTGGCAAATGCTTG
ACAGTTCATTATTCGAAGCATCCCATTGTCAAACCTGAAAGTGAACGGAT
TGCGTCTGGCAAAAGTGGTGTTCGAAAATCACAACGTGATGCCGTTAAAC
GTCCCTCCTCAATCGAGCCAGCAAGACCTCGCATATTTACCTCTCGTTCT
AGGTCGCGTAGTAGATCTCCATCTCGTTCACGTCGCAGAAGTCCCTCCCG
TGAACGTCGTAGACGTCGAAGTCGCTCCCGCACAAGGTCTCCAAGACGCC
GTCGATCTCCGACACGTTCGCCTCGTCGTAGATCACCACGTAGAAGGTCT
CCGAGAAGGAGCAGATCACGAAGCATAGGCCGTTCGTCAAGGCGTCGTTC
CAAGTCTAGAACTAGGTCTCCAAGACGTCGACGCAGAAGTAGAAGCCGAT
CGCGCGATAGACGTCGAAGGAGAAGATCTCCTACCAAGTCACCCTCCCGA
TCACCACGACGTCGAAAAAGAAAATCCAAATCCAGATCTAAGTCACGCTC
CACCTCACCTAAACGAAAGTCATCTCGCAAATCGAACTCGCGTTCGCCTG
ATCGTGAGCGCTCGTCCTcttcaaagaagaaaaagaaagataaaaagaag
GAGAAGGAAAAGGTCGATGAAAAATCTGACGATAAAGAACTTAAGAATTT
GTTGAGTAAGATTAAAACTTTCGAAGAGAAGACACATGGTgataaaaagg
aaaagaaaggcAGCGAGGAGCCGGCTTCAAGTAAGAAAGAAAAGGAGAAG
GATAAAGAATGAATTGTTTTAGTGGGGTTATCTTTATTCTTGTAGAATAC
ATGAAAGACCAAACGTTTGGAAGCTTGATCGAGggaggttgaaaaaaaaa
atctcgatACCTTCGTATTCTGTGCAAAATATTCAGATGAAATGTAAAAC
AATTTTTAGTTTGtgaacaaatgatttttaatcaCTTTTTATCAGTTTTT
TCGTACAACTCAATTGTTTCCCAAAATATCCTTTACTACTCTAATCCCAA
ATTTTTCTTATGATACAGTCtttgaaaaactgatttttcgagatttttac
TTTAATTCAGTTTCCCATTTCTTTGTTTATTATATACTTTTCACTTGTCT
CTGTATGATCAAAATACAATAACACTTGTTTCACTGCATTTTGTTTTCAG
ATATAAGAAATACAgaaaaaatgttattaaaatgTGACTTGGTGGTTTTA
AACCGTTCAGCACCTGGGATGGAGAGCCGTAAATGTCACTCCACCTTCAT
GCTGggcaaagaaaagaagaaagacaaACATGAAGTCTTTTTCACTATTT
ATTCTGTCAAAAGTAAAAGTGGTACCAAGTATAAGGTTCATGACAATATA
CTGAAAGTGCACAACCGGTTCGCAAGGGAAGGCAAATGTACATTATCAAT
GAAAACCCCTCCACATGATTTGGCAATATCTAAGGCGGACGTCAACGCAT
TGAAGAAATTTTTACACGTTTTGAAGTTGGTCTTTAACAAAGAGGAGATC
AGCAACATATCGgaattggaaaatattttaaaagtcaaaaaatgtgATAT
cgaaaaaccgaaagtaaaaaTGCAAGTTCTCTCACGGAAAGAATATCCTT
TGAAAAATGGATTTCCATCGACGTTGGAGACGCTTATCATCAATGGATGT
GTTTTACAAAGACTAGATGCTCGAATTTTGAAACTATCTGCTCTCACTAT
TTTGGATTTGAgtgaaaacaaattgaaaacatTACCCGAATGTTTAGATG
GGCTTAAAAGTTTAAGGTGCTTGAATTTATCAAATAATGACTTTGATTGT
TTTCCATGTTGCTTACTACGGAGTGAAACTGCTGACAGGATTCACATTCT
AGAAATGAACTTCAATAAGATTTCATATCTTCCAAATaatatcgtccgtt
taaagaaCCTTCATACCTTGAAGATAAAAGACAATCATTTAGTCTCTATC
CCGCATTCATTTGGAAATATGAAATCGTTGCAAAGGCTGGAATTGACCAA
TAATATGCTGCAATGTCTACCttggagttttttgaagttgaaattCGATT
TTCTTGATATTAGTGGAAACGCATTCGGTGAAATGAATGTCGGTTTACTG
GATGAGAAATATCATAAAGAACTTCCGGTGCCGTCAACACTGTTTGAAAT
TTGCTGCAGAAAGATTATTCAAACGGATACCAAGTCGAAAGATTTGCAAC
GATTGCCAACTTTATTGAAAGACATTCTCCGGTCACCGAAATATTGTCCT
TGTGGGATGCCATGCGTCAATGAAGGGATCCCTTATGTGTTCTCGTACGA
TGTCTCGCGGCTGACTCACGCCATGTCTTATAGTATGGAAAGAGACCACC
TAAAGATATTGAATTATTTATGTTCTATGAAGTGTTATCAATCGTATTGC
AAAGACCCTGTTCTTTTTCAAAGGCGCGGATTTTTGAAACGAAAATGAAA
CGTATTTGTCATTATTTCactgttttatttttaagtaccatatttttgca
accttttaaagaatattcatTCATTGACTTCATCTTTCTCGAAGTTTTCA
GGACTTCGAAGGTAATCCCGGTAAAAACGTTTTTTGcagctctatttttt
ttttaatatttaaatttttgaaatttttctgttgCAATCTTTTAATCCCG
CTGGTATACAGCTTAAGTCAACTTTTATATATTGAGACGTGGATGATGTA
AAACTTTTCGCGAAgtcaaaaagtcgcgaaatttagcTAATTTAAGTTTC
GTGAATTATGGTTTTAGCTGAAACTTCACAGatagaactttcgcgaattc
atataaaatttaccttttttggtaacaaaaactaTAAAATACGCAAAAAT
TTTGCAAGCAGTGCAAAAATGAGTAGAAAAgt
Run BLAST on NCBI

protein sequence of TCONS_00053448-protein

>TCONS_00053448-protein ID=TCONS_00053448-protein|Name=TCONS_00053448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=526bp
MEGETIKAEPEDAPLPPPPMPPIVNGVASSGEEAANIKTEDIKIEEGDKE
EAVNVGNGFTGKVVRISNVSSGATLQQLATLFGYLGTIQDIRMYPTEENP
TIKIRLCYIKFDTSEQCGVAQHLTNTVFIDKPLIVVPMNREEIPEEKDCQ
HLISTINAYALAAGTGFLPQFFPQDTSNGAGLPGLPPPPIITTTTDPVEI
EEIKRTIFVEDIADDLSAEQLMAFFSGVGEVKYLRFSKGEDGDRRFALIE
FSNLESVPTALQYNGVLFGGKCLTVHYSKHPIVKPESERIASGKSGVRKS
QRDAVKRPSSIEPARPRIFTSRSRSRSRSPSRSRRRSPSRERRRRRSRSR
TRSPRRRRSPTRSPRRRSPRRRSPRRSRSRSIGRSSRRRSKSRTRSPRRR
RRSRSRSRDRRRRRRSPTKSPSRSPRRRKRKSKSRSKSRSTSPKRKSSRK
SNSRSPDRERSSSSKKKKKDKKKEKEKVDEKSDDKELKNLLSKIKTFEEK
THGDKKEKKGSEEPASSKKEKEKDKE
Run BLAST on NCBI

transcript from alignment at scaffold_231:72457..77332-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053448 ID=TCONS_00053448|Name=TCONS_00053448|organism=Clytia hemisphaerica|type=transcript|length=4876bp|location=Sequence derived from alignment at scaffold_231:72457..77332- (Clytia hemisphaerica)
AGCCTGGGAACCTGTTCTGGTCTGTAAAATACACAAATAGGTGCCAATTT
TTTGGGTCTGAGATTTAAATCCATTTTTGACCCCTAAACTACAATTGTGC
AAAGTCTCATGCTTGCACCCCTTTGTGCACAATTTTTACACGATTAGACC
GTACTAATAATTACTGTATGATAAGTTTTAATTTAACATTCTTATTTATT
TTTTTTAGAAATAAAAATAGAATAGTGGCTAATGGAAGGGGAAACCATCA
AAGCAGAACCGGAAGATGCACCCCTCCCTCCACCCCCTATGCCTCCTATA
GTTAATGGGGTAGCCAGTAGTGGAGAAGAGGCAGCAAACATCAAGACAGA
GGACATCAAGATAGAGGAAGGAGACAAAGAAGAAGCAGTAAACGTTGGGA
ATGGTTTCACTGGGAAAGTGGTACGAATCAGCAATGTCTCTTCTGGAGCT
ACATTGCAACAATTAGCCACGTTATTTGGTTACTTGGGCACCATACAAGA
TATTCGAATGTATCCTACGGAAGAGAACCCAACCATCAAAATACGATTAT
GTTACATCAAATTCGACACCTCTGAACAATGTGGCGTTGCACAACATCTC
ACCAACACCGTTTTCATTGATAAACCACTCATTGTTGTTCCAATGAATCG
AGAAGAGATCCCAGAGGAGAAGGATTGCCAACATTTAATTTCCACTATCA
ATGCGTACGCCCTTGCAGCAGGGACAGGGTTCTTACCTCAATTCTTCCCT
CAAGACACGTCGAATGGTGCAGGATTGCCAGGACTTCCTCCACCACCGAT
AATCACCACAACCACTGATCCAGTAGAAATTGAAGAAATCAAACGAACAA
TCTTTGTGGAAGATATTGCGGATGATTTGTCGGCTGAGCAATTGATGGCA
TTTTTTTCCGGCGTTGGGGAAGTGAAGTATTTGAGATTCTCGAAAGGTGA
AGATGGAGACAGAAGATTTGCTCTTATCGAATTCTCCAACCTCGAATCTG
TTCCTACTGCTCTGCAGTATAATGGTGTTTTGTTTGGTGGCAAATGCTTG
ACAGTTCATTATTCGAAGCATCCCATTGTCAAACCTGAAAGTGAACGGAT
TGCGTCTGGCAAAAGTGGTGTTCGAAAATCACAACGTGATGCCGTTAAAC
GTCCCTCCTCAATCGAGCCAGCAAGACCTCGCATATTTACCTCTCGTTCT
AGGTCGCGTAGTAGATCTCCATCTCGTTCACGTCGCAGAAGTCCCTCCCG
TGAACGTCGTAGACGTCGAAGTCGCTCCCGCACAAGGTCTCCAAGACGCC
GTCGATCTCCGACACGTTCGCCTCGTCGTAGATCACCACGTAGAAGGTCT
CCGAGAAGGAGCAGATCACGAAGCATAGGCCGTTCGTCAAGGCGTCGTTC
CAAGTCTAGAACTAGGTCTCCAAGACGTCGACGCAGAAGTAGAAGCCGAT
CGCGCGATAGACGTCGAAGGAGAAGATCTCCTACCAAGTCACCCTCCCGA
TCACCACGACGTCGAAAAAGAAAATCCAAATCCAGATCTAAGTCACGCTC
CACCTCACCTAAACGAAAGTCATCTCGCAAATCGAACTCGCGTTCGCCTG
ATCGTGAGCGCTCGTCCTCTTCAAAGAAGAAAAAGAAAGATAAAAAGAAG
GAGAAGGAAAAGGTCGATGAAAAATCTGACGATAAAGAACTTAAGAATTT
GTTGAGTAAGATTAAAACTTTCGAAGAGAAGACACATGGTGATAAAAAGG
AAAAGAAAGGCAGCGAGGAGCCGGCTTCAAGTAAGAAAGAAAAGGAGAAG
GATAAAGAATGAATTGTTTTAGTGGGGTTATCTTTATTCTTGTAGAATAC
ATGAAAGACCAAACGTTTGGAAGCTTGATCGAGGGAGGTTGAAAAAAAAA
ATCTCGATACCTTCGTATTCTGTGCAAAATATTCAGATGAAATGTAAAAC
AATTTTTAGTTTGTGAACAAATGATTTTTAATCACTTTTTATCAGTTTTT
TCGTACAACTCAATTGTTTCCCAAAATATCCTTTACTACTCTAATCCCAA
ATTTTTCTTATGATACAGTCTTTGAAAAACTGATTTTTCGAGATTTTTAC
TTTAATTCAGTTTCCCATTTCTTTGTTTATTATATACTTTTCACTTGTCT
CTGTATGATCAAAATACAATAACACTTGTTTCACTGCATTTTGTTTTCAG
ATATAAGAAATACAGAAAAAATGTTATTAAAATGTGACTTGGTGGTTTTA
AACCGTTCAGCACCTGGGATGGAGAGCCGTAAATGTCACTCCACCTTCAT
GCTGGGCAAAGAAAAGAAGAAAGACAAACATGAAGTCTTTTTCACTATTT
ATTCCGCCAAAAGTAAAAGTGGTACCAAGTANAAAGAAGAAAGACAAACA
TGAAGTCTTTTTCACTATTTATTCTGTCAAAAGTAAAAGTGGTACCAAGT
ATAAGGTTTGTCGTCAAATTCCATTTCCATTGTTGGTCAATTATTCGGAT
GTATTGTATATTTGACTTTGCAGTAATTCATTTACGACTTACTTACCTAC
AGTCAGGGTTTCAAAATTCAAGATGGAATCCGCGGCTATTTACTTTTATT
GTCGAAACTTTTAAGATATTGTTTTTATGAGTTTCAAATCATGTGCGCCT
CCTACCATGACAAAGCAGAATTAACAAATAAATTTTTCAAATTGGAGCTT
GTGTGAAGTTGAAGGCGACGTAAGTCGATCTTTCTCTTGTTATGAAATGC
TGTGTTTGTTAGCAAATGGAAGTTAAATGTCAATTATAAATTGATTTTCT
TTAAACATTAGGTTCATGACAATATACTGAAAGTGCACAACCGGTTCGCA
AGGGAAGGCAAATGTACATTATCAATGAAAACCCCTCCACATGATTTGGC
AATATCTAAGGTTTGATATCCTTCCTTTTATTCGAACTGGTTTGAGCGTT
ATTTTCATATCTTTGTTTTTTTAATTAAAGAACCTCCTCAAAGAATTCGG
ATGTAAATTAGTCTTTTTTCTGGATTCCTCGAGAAACACCGATGGAACAA
CGATACAGGGATGTTCCCAAATAAAGAGGGCGACAAACATNAAACACCGA
TGGAACAACGATACAGGGATCTTCCCAAATAAAAAGGGCGACAGACATTT
TTACTTTTCTGCACTTTCCAGGCGGACGTCAACGCATTGAAGAAATTTTT
ACACGTTTTGAAGTTGGTCTTTAACAAAGAGGAGATCAGCAACATATCGG
AATTGGAAAATATTTTAAAAGTCAAAAAATGTGATATCGAAAAACCGAAA
GTAAAAATGCAAGTTCTCTCACGGAAAGAATATCCTTTGAAAAATGGATT
TCCATCGACGTTGGAGACGCTTATCATCAATGGATGTGTTTTACAAAGAC
TAGATGCTCGAATTTTGAAACTATCTGCTCTCACTATTTTGGATTTGAGT
GAAAACAAATTGAAAACATTACCCGAATGTTTAGATGGGCTTAAAAGTTT
AAGGTGCTTGAATTTATCAAATAATGACTTTGATTGTTTTCCATGTTGCT
TACTACGGAGTGAAACTGCTGACAGGATTCACATTCTAGAAATGAACTTC
AATAAGATTTCATATCTTCCAAATAATATCGTCCGTTTAAAGAACCTTCA
TACCTTGAAGATAAAAGACAATCATTTAGTCTCTATCCCGCATTCATTTG
GAAATATGAAATCGTTGCAAAGGCTGGAATTGACCAATAATATGCTGCAA
TGTCTACCTTGGAGTTTTTTGAAGTTGAAATTCGATTTTCTTGATATTAG
TGGAAACGCATTCGGTGAAATGAATGTCGGTTTACTGGATGAGAAATATC
ATAAAGAACTTCCGGTGCCGTCAACACTGTTTGAAATTTGCTGCAGAAAG
ATTATTCAAACGGATACCAAGTAAAAAACTTTATTCTTTTAACTTGGCTA
AAACGTAATCCTTTTTACCTGAGGGCCTTTATATATGTGTCAACTCTGTA
TTTTTAATTTATTTTCTCCACGAGTTCTGCACCACGATTTAAGTTTCACA
GATAGATTTTGACCTTATGGCCAAAAACTTGTAGCTTGGGTTTCATATAC
AGGGAAAGCTACTTCAGTCTGCCGTTGAAACTATCTTGATTCTAACACTA
TTCATTGTTCTCGAATTTGAATTTCAGGTCGAAAGATTTGCAACGATTGC
CAACTTTATTGAAAGACATTCTCCGGTCACCGAAATATTGTCCTTGTGGG
ATGCCATGCGTCAATGAAGGGATCCCTTATGTGTTCTCGTACGATGTCTC
GCGGCTGACTCACGCCATGTCTTATAGTATGGAAAGAGACCACCTAAAGA
TATTGAATTATTTATGTTCTATGAAGTGTTATCAATCGTATTGCAAAGAC
CCTGTTCTTTTTCAAAGGCGCGGATTTTTGAAACGAAAATGAAACGTATT
TGTCATTATTTCACTGTTTTATTTTTAAGTACCATATTTTTGCAACCTTT
TAAAGAATATTCATTCATTGACTTCATCTTTCTCGAAGTTTTCAGGACTT
CGAAGGTAATCCCGGTAAAAACGTTTTTTGCAGCTCTATTTTTTTTTTAA
TATTTAAATTTTTGAAATTTTTCTGTTGCAATCTTTTAATCCCGCTGGTA
TACAGCTTAAGTCAACTTTTATATATTGAGACGTGGATGATGTAAAACTT
TTCGCGAAGTCAAAAAGTCGCGAAATTTAGCTAATTTAAGTTTCGTGAAT
TATGGTTTTAGCTGAAACTTCACAGATAGAACTTTCGCGAATTCATATAA
AATTTACCTTTTTTGGTAACAAAAACTATAAAATACGCAAAAATTTTGCA
AGCAGTGCAAAAATGAGTAGAAAAGT

Coding sequence (CDS) from alignment at scaffold_231:72457..77332-

>TCONS_00053448 ID=TCONS_00053448|Name=TCONS_00053448|organism=Clytia hemisphaerica|type=CDS|length=1581bp|location=Sequence derived from alignment at scaffold_231:72457..77332- (Clytia hemisphaerica)
ATGGAAGGGGAAACCATCAAAGCAGAACCGGAAGATGCACCCCTCCCTCC
ACCCCCTATGCCTCCTATAGTTAATGGGGTAGCCAGTAGTGGAGAAGAGG
CAGCAAACATCAAGACAGAGGACATCAAGATAGAGGAAGGAGACAAAGAA
GAAGCAGTAAACGTTGGGAATGGTTTCACTGGGAAAGTGGTACGAATCAG
CAATGTCTCTTCTGGAGCTACATTGCAACAATTAGCCACGTTATTTGGTT
ACTTGGGCACCATACAAGATATTCGAATGTATCCTACGGAAGAGAACCCA
ACCATCAAAATACGATTATGTTACATCAAATTCGACACCTCTGAACAATG
TGGCGTTGCACAACATCTCACCAACACCGTTTTCATTGATAAACCACTCA
TTGTTGTTCCAATGAATCGAGAAGAGATCCCAGAGGAGAAGGATTGCCAA
CATTTAATTTCCACTATCAATGCGTACGCCCTTGCAGCAGGGACAGGGTT
CTTACCTCAATTCTTCCCTCAAGACACGTCGAATGGTGCAGGATTGCCAG
GACTTCCTCCACCACCGATAATCACCACAACCACTGATCCAGTAGAAATT
GAAGAAATCAAACGAACAATCTTTGTGGAAGATATTGCGGATGATTTGTC
GGCTGAGCAATTGATGGCATTTTTTTCCGGCGTTGGGGAAGTGAAGTATT
TGAGATTCTCGAAAGGTGAAGATGGAGACAGAAGATTTGCTCTTATCGAA
TTCTCCAACCTCGAATCTGTTCCTACTGCTCTGCAGTATAATGGTGTTTT
GTTTGGTGGCAAATGCTTGACAGTTCATTATTCGAAGCATCCCATTGTCA
AACCTGAAAGTGAACGGATTGCGTCTGGCAAAAGTGGTGTTCGAAAATCA
CAACGTGATGCCGTTAAACGTCCCTCCTCAATCGAGCCAGCAAGACCTCG
CATATTTACCTCTCGTTCTAGGTCGCGTAGTAGATCTCCATCTCGTTCAC
GTCGCAGAAGTCCCTCCCGTGAACGTCGTAGACGTCGAAGTCGCTCCCGC
ACAAGGTCTCCAAGACGCCGTCGATCTCCGACACGTTCGCCTCGTCGTAG
ATCACCACGTAGAAGGTCTCCGAGAAGGAGCAGATCACGAAGCATAGGCC
GTTCGTCAAGGCGTCGTTCCAAGTCTAGAACTAGGTCTCCAAGACGTCGA
CGCAGAAGTAGAAGCCGATCGCGCGATAGACGTCGAAGGAGAAGATCTCC
TACCAAGTCACCCTCCCGATCACCACGACGTCGAAAAAGAAAATCCAAAT
CCAGATCTAAGTCACGCTCCACCTCACCTAAACGAAAGTCATCTCGCAAA
TCGAACTCGCGTTCGCCTGATCGTGAGCGCTCGTCCTCTTCAAAGAAGAA
AAAGAAAGATAAAAAGAAGGAGAAGGAAAAGGTCGATGAAAAATCTGACG
ATAAAGAACTTAAGAATTTGTTGAGTAAGATTAAAACTTTCGAAGAGAAG
ACACATGGTGATAAAAAGGAAAAGAAAGGCAGCGAGGAGCCGGCTTCAAG
TAAGAAAGAAAAGGAGAAGGATAAAGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033742XLOC_033742Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053448-exon-scaffold_231-1575043694:75004..77332TCONS_00053448-exon-scaffold_231-1575043694:75004..77332Clytia hemisphaericaexon
TCONS_00053448-exon-scaffold_231-1575043694:74878..74933TCONS_00053448-exon-scaffold_231-1575043694:74878..74933Clytia hemisphaericaexon
TCONS_00053448-exon-scaffold_231-1575043694:74423..74521TCONS_00053448-exon-scaffold_231-1575043694:74423..74521Clytia hemisphaericaexon
TCONS_00053448-exon-scaffold_231-1575043694:73413..74161TCONS_00053448-exon-scaffold_231-1575043694:73413..74161Clytia hemisphaericaexon
TCONS_00053448-exon-scaffold_231-1575043694:72457..73155TCONS_00053448-exon-scaffold_231-1575043694:72457..73155Clytia hemisphaericaexon
TCONS_00053448-exon-scaffold_231-1510915933:75004..77332TCONS_00053448-exon-scaffold_231-1510915933:75004..77332Clytia hemisphaericaexon
TCONS_00053448-exon-scaffold_231-1510915933:74878..74933TCONS_00053448-exon-scaffold_231-1510915933:74878..74933Clytia hemisphaericaexon
TCONS_00053448-exon-scaffold_231-1510915933:74423..74521TCONS_00053448-exon-scaffold_231-1510915933:74423..74521Clytia hemisphaericaexon
TCONS_00053448-exon-scaffold_231-1510915933:73413..74161TCONS_00053448-exon-scaffold_231-1510915933:73413..74161Clytia hemisphaericaexon
TCONS_00053448-exon-scaffold_231-1510915933:72457..73155TCONS_00053448-exon-scaffold_231-1510915933:72457..73155Clytia hemisphaericaexon
TCONS_00053448-exon-scaffold_231-1491911889:75004..77332TCONS_00053448-exon-scaffold_231-1491911889:75004..77332Clytia hemisphaericaexon
TCONS_00053448-exon-scaffold_231-1491911889:74878..74933TCONS_00053448-exon-scaffold_231-1491911889:74878..74933Clytia hemisphaericaexon
TCONS_00053448-exon-scaffold_231-1491911889:74423..74521TCONS_00053448-exon-scaffold_231-1491911889:74423..74521Clytia hemisphaericaexon
TCONS_00053448-exon-scaffold_231-1491911889:73413..74161TCONS_00053448-exon-scaffold_231-1491911889:73413..74161Clytia hemisphaericaexon
TCONS_00053448-exon-scaffold_231-1491911889:72457..73155TCONS_00053448-exon-scaffold_231-1491911889:72457..73155Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053448-proteinTCONS_00053448-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_231supercontigscaffold_231:72457..77332 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.20842	5.64049	7.78599	8.96467	7.60883	5.77307	3.89084	6.20607	3.59824	4.11885	0.609615	1.68047	2.61844	2.22892	2.19991	3.97697	7.32421	3.67821	2.05019	1.38454e-07	1.89869	0.947053	6.59371	6.24116	6.15518	9.14673	1.70454	3.80628e-07	5.67029	3.61445
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00053448 vs. Swiss-Prot (Human)
Match: LLR1 (Leucine-rich repeat protein 1 OS=Homo sapiens GN=LRR1 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 4.066e-44
Identity = 125/419 (29.83%), Postives = 200/419 (47.73%), Query Frame = 1 
Query: 2221 MLLKCDLVVLNRSAPGM----ESRKCHSTFMLGKEKKKDKHEV--FFTIYSVKSKSGTKYKVHDNILKVHNRFAREGKCTLSMKTPPHDLAISKADVNAXXXXXXXXXXXXXXXXXXXXXXXXXXXKVKKCDIEKPKVKMQVLSRKEYPLKNGFPSTLETLIINGCVLQRLDARILKLSALTILDLSENKLKTLPECLDGLKSLRCLNLSNNDFDCFPCCLLRSETADRIHILEMNFNKISYLPNNIVRLKNLHTLKIKDNHLVSIPHSFGNMKSLQRLELTNNMLQCLPWSFLKLKFDFLDISGNAFGEMNVGLLDEKYHKELPV-----PSTLFEICCRKIIQTDTKSKDLQRLPTLLKDILRSPKYCPCGMPCVNEGIPYVFSYDVSRLTHAMSY--SMERDHLKILNYLCSMKCY 3438
            M L C++ V++R  P +      +   +   L ++  + +  V  F  I ++K K GT+Y++ +NI +   +F  EGK T+ +K PP D+ +SKA  ++      +  +       +  + +  +  VK  + E  K KM + S+K+YPL   FP +LE L  + C L R+D R+L L +L  LDLS N +K LP  +  L  L+ LNL++N  + F   L  S     +  L+++ NKI  LP    +L+ L  LK+ DN L+  P   G + +L+ L    N L  LP  F  L  ++LD+ GN F +  V          LPV     P TL E   R I+           +P  L   L + K C CG  C+N  I    + ++  + H +    ++      I++Y CS+ CY
Sbjct:    1 MKLHCEVEVISRHLPALGLRNRGKGVRAVLSLCQQTSRSQPPVRAFLLISTLKDKRGTRYELRENIEQFFTKFVDEGKATVRLKEPPVDICLSKAISSS--LKGFLSAMRLAHRGCNVDTPVSTLTPVKTSEFENFKTKMVITSKKDYPLSKNFPYSLEHLQTSYCGLVRVDMRMLCLKSLRKLDLSHNHIKKLPATIGDLIHLQELNLNDNHLESFSVALCHSTLQKSLRSLDLSKNKIKALPVQFCQLQELKNLKLDDNELIQFPCKIGQLINLRFLSAARNKLPFLPSEFRNLSLEYLDLFGNTFEQPKV----------LPVIKLQAPLTLLESSARTILHNRIPYGS-HIIPFHLCQDLDTAKICVCGRFCLNSFIQGTTTMNLHSVAHTVVLVDNLGGTEAPIISYFCSLGCY 406
The following BLAST results are available for this feature:
BLAST of TCONS_00053448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LLR14.066e-4429.83Leucine-rich repeat protein 1 OS=Homo sapiens GN=L... [more]
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