TCONS_00053427 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053427
Unique NameTCONS_00053427
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053427 ID=TCONS_00053427|Name=TCONS_00053427|organism=Clytia hemisphaerica|type=transcript|length=546bp
AAAGTTGGTGGTTCACAGTGACAGTCTGGTGCAGTGGTTATAAAAATCAC
ACATCAAGATGCAAAACGATAGCGGTGAAGTTGTGGATCTCTACATCCCA
AGAAAGTGCTCAGCCACCAATACCTTGATCTCATCAAAAGACCATGCTTC
AGTTCAACTGTCTGTTGCTGAGGTTGACGATGAAGGCAGAATGACAGGTG
GATTCAAAACCTTTGCATTTTCTGGCAAATTGAgatgtgctGCTGAATCT
GATGATGCCCTCAATCATTTATGTCTCAAAGATGGAATTTTCCCAAAgaa
cTACAACATGAACTAGAAGTGTACACCACACTGAATTGTACATAAGGAAA
TAAACATCTCGACTACAATTATATTGCATTCATCTTTTGTTCTACCCAGA
TTTGGACATTTTTTGCCTGTATTGTTGTGTTGCAAAGGATTCTTAACTCT
ATTTGGCCTacggggctgtttctgttcggaggtcaaattattggtaatac
CTCCTGGAAATAGAGCTTTTTccatgaaattttttgaaaattccta
Run BLAST on NCBI

transcript from alignment at scaffold_231:145611..153611+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053427 ID=TCONS_00053427|Name=TCONS_00053427|organism=Clytia hemisphaerica|type=transcript|length=8001bp|location=Sequence derived from alignment at scaffold_231:145611..153611+ (Clytia hemisphaerica)
AAAGTTGGTGGTTCACAGTGACAGTCTGGTGCAGTGGTTATAAAAGTAAA
TTTCTACTCAATCCCGCGCGTTGTGTTTACTTCTAGCCAAGAATAATAAA
TCATAGAAAAATTCTACGCCTAAAAATATGGGCTGGGAGGTCTTTTACCA
AGGGAAGAAACGATTTGTTGATATGGCGGGAAATAGCATTAACGATTTTA
ATTGCAAAGTTTTACCTTTGATTTACCTTATAATTATTTTCCTTGGCCTT
TCTGTTaaataaaatgaagtaaaaaatccttcttcttaaaattttaaaaa
tacatcACAGATAAATCATTTAATATCGATGAAGAATCGATAAGAAAAAT
ATACTCTATTGTCCGAACATCTCATTTGCTTTCACTCATACCCAGGCTCC
CAAAATCGAAGAAGTAGATAAAATGGTTCTTTTTACTTGCTCATCGCTAA
CAGCCAGCACGTGTAAGTAAATTTCAGAttgtattttattattttgactC
ACCTAAAACTGTCTGGAAAACCATGGCAAACCTGTTAGAattcttatttt
aattttttaccaGATCACACATCAAGATGCAAAACGATAGCGGTGAAGTT
GTGGATCTCTACATCCCAAGAAAGTGGTAAGCATTGCCAGTTTTTTTTAG
AATGAAAGTTTGATTGAGGAAAATTTGTGCTAGTACAATNNNNNNNNNNN
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tgtctgaagaaaatgtccaaaattgcagttactccacatagtgtcaagga
gtaactgcaagacccccccctgATTTTAATCAAAAGTCTTACTTTATAAT
ACTTTTGATATCAATATTCTattgcaataaatatttttacaaaacgGATA
CTTTTAATAGTGCTACAGAAAATTGATCCCatccaacacgaagcaaagtc
gatatgtCACCCtacgattttttttgaaattttcgtaCATATAACATATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNCAATGACGAGAATCTTATCTGATATTTTGATGAATTCA
ATCGAGCTTTTTAAAACTGAGTACTAGTATAAAGACCTAGTAAGCTTCAA
ATCTAATATCCCAGACaaccgcgctcgataggatcgatcatcggaacggc
tcgatgacagattgatatgtgatcgatggattacttaacgatccggatag
gagaccgatagaggatcgatactgaagattttttcaagcttatgattagt
tatcgaatatttatcaatctatcattaatcttatcgaccctatcgactta
TGATCGATAACAAACCAGACCCCCGCGCTCGATAGGATCGATCATCGGAA
CGGctcgatgacggatcgatatgtgatcgatggattacttatcgatccgg
ataggagatcgatggaagattcggccattaaaaagtcttgagtatcgatc
tttggttgatccattatcgagctagtatttcaatcgagtatatcgattcg
tcatcgatcgttaattgattcgtcatcgatcgttaatcgattcgtcatcg
atcgttaattgattcgtcatcgatcgttaattgattcgtcatcgatcgtt
aatcgattcgtcattgatcgttaatcgattcgtcattgatcgttaatcga
gtatgcatcgattataaattgattatgcatcgattataaaattaattagc
agGTTGGGGACGCTTAttatattaggtacccgagagtaccatATCGGCCA
TTTTTAAGCCGGGCCCCTCCGCTTTTTTAAGTTCGGAGCTAGGgctcagg
cgaaattccgtaatctaaaccttccagcagATGTTGAAAGTTTCCCCGAC
CTTTTCCCAGAGCTTTCTTAGCGtgtcgaaagaaaatttctacatctgGT
GCCAGATAAGTACCGATAAGTAAATCCGGTTTGACGACATTAGATCGATA
TGGATCGattaatcaatataaaaaaacggtcgatattttgattggatcga
tagaggggtcgataggtaatcgataggtgtcgatagggaatcgataggtg
tcgataggtaatcgataggtgtcgatagggaatcgatagcgagaaagatc
gattaatattagagctcgctttttagaaagagtcgatagggtcgataaga
tcgataaaagatcgatgatagatcgataactaatcataagcttaaaaaaa
tcttgagtatcgatcctctatcgatctcctatccggatcgataagtaatc
catcgatcacatatcgatccgtcatcgagccgttccgatgatcgatccta
tcgagcgtgGGGTCTGGAACAAATCGATTaatgatcgatgacgaatcggt
atactcaattgaaatactagctcgataatggatcaacgaaggatcgatat
tcaagacttttttaTGGCTGAATTTTCCAttgatctcctatccggatcgt
taagtaatccatcgattacatatcgagccgttccgatgatcgatcctatc
gagcgcggacgtctggaatATCTTGTTCTTGCTGATCAAGTGCTTCCACT
ACTTGTGACCATTGACAGATTGAATTAAGCTTTGAAATGCTCTTTTAACA
GCACAGAACATTACCCTATATTTGATATAGGTGAGATTAATATCTTTGTT
TTACAAGAGAAATGTGTAAAGCCTGGTTTACATTTACTGTGGTTGTTATT
AAAGAGCGTGCGCCAATAGAGAAATTGGACGagctaaaaaaattatataa
gatATAAAGCAGAACCCCTTAAAAACCTCCTGCAGCTTTCTAGAAATTTG
AataaccccctggaaacctGAAATAACTTATGTCTGGCATAGAAAAACTC
TAAAGGTAAAGGGTCCTCAACTATAAACTGATATGCTTCAAACTCTCCCT
ATTTTAGCccaaatttttgaaacaaagtCTTACCTCTATATGGAAGTATG
CTGAACAGATCTCTGTCTAGAATTTTTCAGCTTAACAAAATAGGTGGTAA
TTATCTGGTTTTTCATGCACTGATGAATTGAAATATTCTGAATAACATGT
TGACTTGCATATCGAGCTTTTTAAACCTGAGCATGAATTAACTAATTTCA
CTTATGTGTGATACGGAATACGAGTGACATTTCAGTGAACCTGTATGTCa
agcttttttttttgcctACAGTCATTGGTTAATATTGAAAacaatgttta
tcaaatttaCAGTTTTATTATAGCTCAGCCACCAATACCTTGATCTCATC
AAAAGACCATGCTTCAGTTCAACTGTCTGTTGCTGAGGtaatttttgtta
ttattgaaattttgataacAGGTTAATGATGTTTAATTCTTCACTTTGAA
CTGATCCAATGTGATTGATATCTTTTCAACTCCTGAAACCTGTTCTTATT
TGAAATGGAACtacttttgttttatattttacttaaaaatataattcaaa
ctCAAAACATCTCTTTTAGGTTGACGATGAAGGCAGAATGACAGGTGGAT
TCAAAACCTTTGCATTTTCTGGCAAATTGAgatgtgctgtaagaatattt
aatGATTACAAAGTATTTTTATGGAATGGAAACTGATGATTAACTTGTTC
ATGCACCACTCAGACTTATGATGGTGATAAAAAGAACCATATAAGAATGA
AGTTTCTTCAGTTTTGTCATTTATCATTTGGATCACCATATTATGTTCTG
AAAGTTGTGATTAATTAGTTCATGCACCACTCATACTAATTTCGATTAGG
ATGGTGAAAAAAGAACATAATGAACTTTCTATATAATGCTTAATCGGGCA
AATTGTACTAAAAAATTTAAGtgagaatttatttttgactggAAATTACA
TTCTCTTACTTGAGCTAAATCTTGAGTTCTTCTATTGAAGTAGTATGACC
AGTGATGATTATTTACCTACATTGCCTGATATTACATGATTTCACACGTA
AATCTGAGGTCAATTCTATGTGTCTACTTACCTTAAGTGGCTTTATTTTT
ACTTTGATTAatttaggggtcactcacatatcgatttttcCCACGCTTAG
CGTCATTCCGACGCTAATAAAAAAACCCACCTACCCTTAGCGCCATATTA
TGAAATAAACCGAAATTCGATGGAAATCTTTTTACCTTTCTCACTTCAAG
TATTGATGTTCACTGCCCGAGAAGTTTCTTCCCCCCTTTTGTTGGTACAT
TTTGTAGTGGTTTCGGTATATGACTTAAGCACAGTTTGGTTCCCAGACCT
GCATAAGTTATGACGCAGGGGAAAAGCCCCAAACTTTTTAAACATCTAGC
GTCTCCGGCATTTTACTATATTTTACTCAAAAAACCAATATCTCTAGTTG
ATTTTCTTAGCGTTGCTCAATCTAACCCACCCACCCTATAGCATCGGAAT
GACGCTAAGCGTGGTAAAAATCAGTATGTGAGTGGTCCCTTAATAATTCG
ATTTGGAAATTATTAACTCTAATATTGAAGCTCCATTTTGCAAAACTTTA
AGAATAAATCATATTGTGAAAATTAGTCTACATATTCTAAAatttacaca
aaaattaattaattcaCTTAAAGCTAGTTACCAGATTCTCAAAAGTTTAG
GTACTATTTTGGAAATTATTggtttgaattgaaaattttatcatattttc
atttAGGCTGAATCTGATGATGCCCTCAATCATTTATGTCTCAAAGATGG
AATTTTCCCAAAGTAAGTTGATCAATGTTGTTAAATTCCCCCAATACAGT
CTGCAGTCCgttcatctgttgaaagaaTTGTAACCAATGTAAATGTATTA
CGAATCGTTTTACCTGCTTATTTCTTGTCCCAGGGTACCCTTACGATTCC
CAACtagttttagaaaaataaaattttaaagggacataaaagtaataaaa
tgtaaacattgcgcaaaccacgtgtcattaaagagaacaattaaaatcac
gtgttcaaaacaaacttgtaaaacaattgaacaatcaaaattagccatat
ttggtttgattctttattttgacatgtgacatttgttttgattttgtatc
cgctgcatacagtttgtttacaaatttcgcaagtactgtcaTGTTCCTTT
AAAGAAAACCTGGTTTACctcaatgggccattccattttatatcccaACA
TGGGGTAGATGAAcatttccagaaaatgtccCAGGTGTTAATTCATTTAT
TATTCGTTTATTTAAGGGATAAAGTGTTGCACTAAAATTTCCAGGTGTAA
AAGACTGGTTTTAGTTCATCCACCCTCGCTTAAAGGTGTGAAAAAATCTT
TCCGAGggtattttttgcaaactttgccgttttccagggggtatccacac
attttcaatactTTCCTTGACttaaaggttcgtccaccctcccccctgta
tggttttggAACAGCCCATGCCTTAATggttaaaatttatttattttttc
aggaacTACAACATGAACTAGAAGTGTACACCACACTGAATTGTACATAA
GGAAATAAACATCTCGACTACAATTATATTGCATTCATCTTTTGTTCTAC
CCAGATTTGGACATTTTTTGCCTGTATTGTTGTGTTGCAAAGGATTCTTA
ACTCTATTTGGCCTacggggctgtttctgttcggaggtcaaattattggt
aatacCTCCTGGAAATAGAGCTTTTTccatgaaattttttgaaaattcct
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033732XLOC_033732Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053427-exon-scaffold_231-1491911889:145611..145655TCONS_00053427-exon-scaffold_231-1491911889:145611..145655Clytia hemisphaericaexon
TCONS_00053427-exon-scaffold_231-1510915933:145611..145655TCONS_00053427-exon-scaffold_231-1510915933:145611..145655Clytia hemisphaericaexon
TCONS_00053427-exon-scaffold_231-1575043694:145611..145655TCONS_00053427-exon-scaffold_231-1575043694:145611..145655Clytia hemisphaericaexon
TCONS_00053427-exon-scaffold_231-1491911889:146174..146236TCONS_00053427-exon-scaffold_231-1491911889:146174..146236Clytia hemisphaericaexon
TCONS_00053427-exon-scaffold_231-1510915933:146174..146236TCONS_00053427-exon-scaffold_231-1510915933:146174..146236Clytia hemisphaericaexon
TCONS_00053427-exon-scaffold_231-1575043694:146174..146236TCONS_00053427-exon-scaffold_231-1575043694:146174..146236Clytia hemisphaericaexon
TCONS_00053427-exon-scaffold_231-1491911889:151134..151197TCONS_00053427-exon-scaffold_231-1491911889:151134..151197Clytia hemisphaericaexon
TCONS_00053427-exon-scaffold_231-1510915933:151134..151197TCONS_00053427-exon-scaffold_231-1510915933:151134..151197Clytia hemisphaericaexon
TCONS_00053427-exon-scaffold_231-1575043694:151134..151197TCONS_00053427-exon-scaffold_231-1575043694:151134..151197Clytia hemisphaericaexon
TCONS_00053427-exon-scaffold_231-1491911889:151380..151448TCONS_00053427-exon-scaffold_231-1491911889:151380..151448Clytia hemisphaericaexon
TCONS_00053427-exon-scaffold_231-1510915933:151380..151448TCONS_00053427-exon-scaffold_231-1510915933:151380..151448Clytia hemisphaericaexon
TCONS_00053427-exon-scaffold_231-1575043694:151380..151448TCONS_00053427-exon-scaffold_231-1575043694:151380..151448Clytia hemisphaericaexon
TCONS_00053427-exon-scaffold_231-1491911889:152567..152622TCONS_00053427-exon-scaffold_231-1491911889:152567..152622Clytia hemisphaericaexon
TCONS_00053427-exon-scaffold_231-1510915933:152567..152622TCONS_00053427-exon-scaffold_231-1510915933:152567..152622Clytia hemisphaericaexon
TCONS_00053427-exon-scaffold_231-1575043694:152567..152622TCONS_00053427-exon-scaffold_231-1575043694:152567..152622Clytia hemisphaericaexon
TCONS_00053427-exon-scaffold_231-1491911889:153363..153611TCONS_00053427-exon-scaffold_231-1491911889:153363..153611Clytia hemisphaericaexon
TCONS_00053427-exon-scaffold_231-1510915933:153363..153611TCONS_00053427-exon-scaffold_231-1510915933:153363..153611Clytia hemisphaericaexon
TCONS_00053427-exon-scaffold_231-1575043694:153363..153611TCONS_00053427-exon-scaffold_231-1575043694:153363..153611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_231supercontigscaffold_231:145611..153611 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1169.52	1062.63	1289.63	1263.22	553.019	394.098	561.7	555.285	844.741	630.199	731.07	812.58	1066.02	884.704	1030.63	987.243	1095.21	1051.76	821.674	786.286	605.039	576.771	1202.02	967.467	548.474	573.217	590.9	568.357	704.16	767.188
Blast
[Close]
BLAST of TCONS_00053427 vs. Swiss-Prot (Human)
Match: RS21 (40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.003e-27
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 2 
Query:   59 MQNDSGEVVDLYIPRKCSATNTLISSKDHASVQLSVAEVDD-EGRMTGGFKTFAFSGKLRCAAESDDALNHLCLKDGIFPKNY 304
            MQND+GE VDLY+PRKCSA+N +I +KDHAS+Q++VAEVD   GR  G FKT+A  G +R   ESDD++  L   DGI  KN+
Sbjct:    1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
The following BLAST results are available for this feature:
BLAST of TCONS_00053427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS211.003e-2757.8340S ribosomal protein S21 OS=Homo sapiens GN=RPS21... [more]
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