TCONS_00053439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053439
Unique NameTCONS_00053439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053439 ID=TCONS_00053439|Name=TCONS_00053439|organism=Clytia hemisphaerica|type=transcript|length=1291bp
ATTTTCGTTCGCTTTCATTTCCTCTTTTCTTACATCGAGTGTCAGATACT
TTTGATGCATTATTTCATTGAGGTAAAACAATAGTGTAGAGAAGAAGTGA
GTTATGTCTAGCTGGGCAGCTCTCTTTCTTTTCTCCTTGTTGACTGGTAT
TACTATTCTGTATTGTGCGTTTCAATTATATCCCGCTGGCACACGATTTG
TGAGTCGTAATAGAGCTCTTGTTCAAGACGACAGTAGCCGTGATTTCATA
CCGAATCCAGTGCAGCAGCAACGATTGAATTACCTCCGACATTTTTGTCA
AGCTAAACGGAAAAAAGATGGCGGTACGAGTCTCAGAACATTCATACAGC
AGAGGTTTCTTGAGCGAGAGCAAAAGGGACATATATTCGTTAGTCGCGTT
CTACCGGTGCTCTATTGCGCCGTACCCAAAGTCGCTAGTACGAACTGGAA
GAGAATGCTACTTTTGTTCGATGGTATAAAGTCAAACATTAGTGAAATGG
GTGTCAAATCGAAGGTTCATACGCAACGAGGTCTTCGACCCTTGTATCAT
GTCAAGGGACACGCGATGCCAAAAGTTATAAAAGACTCTTTCAAGTTTAT
GTTCGTAAGACACCCTTTTGAAAGATTAGCATCTGCATACCGGAATAAGT
TCGCGGATAACAatacttattttgaaaaaacgtaCGGGTCAAGAATATTG
AAAATGTTTCGAAAAGATTTGAGTAAAGAGGAATATAATCGCGGACGCGG
TGCAACTTTTCAAGAATTCGTTCGCTGGATTGTGCAGGTCGAACCATATG
ACCCGCATTGGTACCCTGCAACCAAACTATGTCACCCATGTCAAATCCGA
TATAACTTTATCGGGAAGATGGAATCACTTTTGAGAGATGCAAAGGAAGT
GGTGCGACGTGTAGATTCCGTTCATAAGTTCCCCAAAACTTGGACCGATG
GCTATAAAGTCAGTTCGAATGATTTGATGTTCCATCTCTTCTCTACTTTA
GATGAAAAGGATATTTTAGGGATTTACAAATATTACAAAGAAGATTTCGA
TGCTTTTGATTATGGCCTACCGAGAATTCAACACTCGTATAATAACAAGA
ATAACCTTCTCTTGCGTACTTTAAAAAAGATCTTGAACGGTAAATTAACG
TGATGTACAGCAGCAGTTGAAAATTAACAGCTTTCGAAACTGAATTTATG
ATAATGTATGATATATTTCAATTAGTGAACTTTTGTAACCTTGAATTATC
ATTTCGAAAAAAGCACAGAAGCTTAACAAGCATTAGGGGAT
Run BLAST on NCBI

protein sequence of TCONS_00053439-protein

>TCONS_00053439-protein ID=TCONS_00053439-protein|Name=TCONS_00053439-protein|organism=Clytia hemisphaerica|type=polypeptide|length=349bp
MSSWAALFLFSLLTGITILYCAFQLYPAGTRFVSRNRALVQDDSSRDFIP
NPVQQQRLNYLRHFCQAKRKKDGGTSLRTFIQQRFLEREQKGHIFVSRVL
PVLYCAVPKVASTNWKRMLLLFDGIKSNISEMGVKSKVHTQRGLRPLYHV
KGHAMPKVIKDSFKFMFVRHPFERLASAYRNKFADNNTYFEKTYGSRILK
MFRKDLSKEEYNRGRGATFQEFVRWIVQVEPYDPHWYPATKLCHPCQIRY
NFIGKMESLLRDAKEVVRRVDSVHKFPKTWTDGYKVSSNDLMFHLFSTLD
EKDILGIYKYYKEDFDAFDYGLPRIQHSYNNKNNLLLRTLKKILNGKLT
Run BLAST on NCBI

transcript from alignment at scaffold_231:272140..274644+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053439 ID=TCONS_00053439|Name=TCONS_00053439|organism=Clytia hemisphaerica|type=transcript|length=2505bp|location=Sequence derived from alignment at scaffold_231:272140..274644+ (Clytia hemisphaerica)
ATTTTCGTTCGCTTTCATTTCCTCTTTTCTTACATCGAGTGTCAGATACT
TTTGATGCATTATTTCATTGAGGTAAAACAATAGTGTAGAGAAGAAGTGA
GTTATGTCTAGCTGGGCAGCTCTCTTTCTTTTCTCCTTGTTGACTGGTAT
TACTATTCTGTATTGTGCGTTTCAATTATATCCCGCTGGCACACGATTTG
TGAGTCGTAATAGAGCTCTTGTTCAAGACGACAGTAGCCGTGATGTATGT
AaagaatataaaatttttctgtcAAAATTTATCCCCTCTTTctatctttt
gttattttgttttttaatatcTATCAAAACTAATTAATTAAGGTGTAAAT
TTTCTCTAAtcaaatttttgaactttttttaaaaatgaatcaATCAAGGA
ACGTCTCTAAGCATAACACGTGTCCCTCTTGTACACGcaaataattatca
taaattaATAAATGACTCGTTCACGCGCGTGCACGAGGCGAACCACATGT
AAACTATGAATGACATTGTTGACAACAAGTTTTGATTgatcaattatttt
ttgaaagtgtcaaaTTTTTAAAGTGACAATAACAAACGAATAGAATTGTG
ATAAAAACATTGGCCTCaattatttaaatattttacatAAAGCACTATCC
aaatgtaaagaaaaattatctaATCTATTATTTTAGTCATCTTATTTTTA
CTGATAACATATATCCCCTTCAAGAAATTCTAGCCTGGCCAGAAAGACCA
CGAGTGCTCCTAGTATGCTAGACCGAGAGACACCAAAAGAACTGAAAAAG
ACCTGTATTGGGCGTTTCGAAATCGGACGTCATGAATTGTAAAAAGGgtg
gaaatttcgaaaatttttttactaTCTATAGCACTGATGATGGCATAAGA
CCGAAAAGCTTCTgcttcaatttttaacaaatgttgttctttttacttaa
ttcgaaaaaaaatatcaagaattattCTTTAGATCAGAAACTTTAACTTT
AAAAGGATTTGATttcgcagactctaaaacacccgatttcttaggaaaat
agacaaaactaCTCACaagtggtgaaaataagaacatgttaagaacattt
caaggcttaaaactcaaaaagttaagaaggcTTCAACGACTCTggatgtt
attataaaaaaacttgtatcatgaaaattataaaattaccTTNttaattc
gaaaaaaaatatcaagaattattCTTTAGATCAGAAACTTTAACTTTAAA
AGGATTTGATttcgcagactctaaaacacccgatttcttaggaaaataga
caaaactaCTCACaagtggtgaaaataagaacatgttaagaacatttcaa
ggcttataactcaaaaagttaagaaggcTTCAACGActctggatgttctt
ataaaaaaacttgtatcgagaaaattataaaattaccTTCTTCTTTATCT
TCTTCCAGTTCATACCGAATCCAGTGCAGCAGCAACGATTGAATTACCTC
CGACATTTTTGTCAAGCTAAACGGAAAAAAGATGGCGGTACGAGTCTCAG
AACATTCATACAGCAGAGGTTTCTTGAGCGAGAGCAAAAGGGACATATAT
TCGTTAGTCGCGTTCTACCGGTGCTCTATTGCGCCGTACCCAAAGTCGCT
AGTACGAACTGGAAGAGAATGCTACTTTTGTTCGATGGTATAAAGTCAAA
CATTAGTGAAATGGGTGTCAAATCGAAGGTTCATACGCAACGAGGTCTTC
GACCCTTGTATCATGTCAAGGGACACGCGATGCCAAAAGTTATAAAAGAC
TCTTTCAAGTTTATGTTCGTAAGACACCCTTTTGAAAGATTAGCATCTGC
ATACCGGAATAAGTTCGCGGATAACAatacttattttgaaaaaacgtaCG
GGTCAAGAATATTGAAAATGTTTCGAAAAGATTTGAGTAAAGAGGAATAT
AATCGCGGACGCGGTGCAACTTTTCAAGAATTCGTTCGCTGGATTGTGCA
GGTCGAACCATATGACCCGCATTGGTACCCTGCAACCAAACTATGTCACC
CATGTCAAATCCGATATAACTTTATCGGGAAGATGGAATCACTTTTGAGA
GATGCAAAGGAAGTGGTGCGACGTGTAGATTCCGTTCATAAGTTCCCCAA
AACTTGGACCGATGGCTATAAAGTCAGTTCGAATGATTTGATGTTCCATC
TCTTCTCTACTTTAGATGAAAAGGATATTTTAGGGATTTACAAATATTAC
AAAGAAGATTTCGATGCTTTTGATTATGGCCTACCGAGAATTCAACACTC
GTATAATAACAAGAATAACCTTCTCTTGCGTACTTTAAAAAAGATCTTGA
ACGGTAAATTAACGTGATGTACAGCAGCAGTTGAAAATTAACAGCTTTCG
AAACTGAATTTATGATAATGTATGATATATTTCAATTAGTGAACTTTTGT
AACCTTGAATTATCATTTCGAAAAAAGCACAGAAGCTTAACAAGCATTAG
GGGAT

Coding sequence (CDS) from alignment at scaffold_231:272140..274644+

>TCONS_00053439 ID=TCONS_00053439|Name=TCONS_00053439|organism=Clytia hemisphaerica|type=CDS|length=2100bp|location=Sequence derived from alignment at scaffold_231:272140..274644+ (Clytia hemisphaerica)
ATGTCTAGCTGGGCAGCTCTCTTTCTTTTCTCCTTGTTGACTGGTATTAC
TATTCTGTATTGTGCGTTTCAATTATATCCCGCTGGCACACGATTTGTGA
GTCGTAATAGAGCTCTTGTTCAAGACGACAGTAGCCGTGATTTCATACCG
AATCCAGTGCAGCAGCAACGATTGAATTACCTCCGACATTTTTGTCAAGC
TAAACGGAAAAAAGATGGCGGTACGAGTCTCAGAACATTCATACAGCAGA
GGTTTCTTGAGCGAGAGCAAAAGGGACATATATTCGTTAGTCGCGTTCTA
CCGGTGCTCTATTGCGCCGTACCCAAAGTCGCTAGTACGAACTGGAAGAG
AATGCTACTTTTGTTCGATGGTATAAAGTCAAACATTAGTGAAATGGGTG
TCAAATCGAAGGTTCATACGCAACGAGGTCTTCGACCCTTGTATCATGTC
AAGGGACACGCGATGCCAAAAGTTATAAAAGACTCTTTCAAGTTTATGTT
CGTAAGACACCCTTTTGAAAGATTAGCATCTGCATACCGGAATAAGTTCG
CGGATAACAatacttattttgaaaaaacgtaCGGGTCAAGAATATTGAAA
ATGTTTCGAAAAGATTTGAGTAAAGAGGAATATAATCGCGGACGCGGTGC
AACTTTTCAAGAATTCGTTCGCTGGATTGTGCAGGTCGAACCATATGACC
CGCATTGGTACCCTGCAACCAAACTATGTCACCCATGTCAAATCCGATAT
AACTTTATCGGGAAGATGGAATCACTTTTGAGAGATGCAAAGGAAGTGGT
GCGACGTGTAGATTCCGTTCATAAGTTCCCCAAAACTTGGACCGATGGCT
ATAAAGTCAGTTCGAATGATTTGATGTTCCATCTCTTCTCTACTTTAGAT
GAAAAGGATATTTTAGGGATTTACAAATATTACAAAGAAGATTTCGATGC
TTTTGATTATGGCCTACCGAGAATTCAACACTCGTATAATAACAAGAATA
ACCTTCTCTTGCGTACTTTAAAAAAGATCTTGAACGGTAAATTAACGTGA
ATGTCTAGCTGGGCAGCTCTCTTTCTTTTCTCCTTGTTGACTGGTATTAC
TATTCTGTATTGTGCGTTTCAATTATATCCCGCTGGCACACGATTTGTGA
GTCGTAATAGAGCTCTTGTTCAAGACGACAGTAGCCGTGATTTCATACCG
AATCCAGTGCAGCAGCAACGATTGAATTACCTCCGACATTTTTGTCAAGC
TAAACGGAAAAAAGATGGCGGTACGAGTCTCAGAACATTCATACAGCAGA
GGTTTCTTGAGCGAGAGCAAAAGGGACATATATTCGTTAGTCGCGTTCTA
CCGGTGCTCTATTGCGCCGTACCCAAAGTCGCTAGTACGAACTGGAAGAG
AATGCTACTTTTGTTCGATGGTATAAAGTCAAACATTAGTGAAATGGGTG
TCAAATCGAAGGTTCATACGCAACGAGGTCTTCGACCCTTGTATCATGTC
AAGGGACACGCGATGCCAAAAGTTATAAAAGACTCTTTCAAGTTTATGTT
CGTAAGACACCCTTTTGAAAGATTAGCATCTGCATACCGGAATAAGTTCG
CGGATAACAatacttattttgaaaaaacgtaCGGGTCAAGAATATTGAAA
ATGTTTCGAAAAGATTTGAGTAAAGAGGAATATAATCGCGGACGCGGTGC
AACTTTTCAAGAATTCGTTCGCTGGATTGTGCAGGTCGAACCATATGACC
CGCATTGGTACCCTGCAACCAAACTATGTCACCCATGTCAAATCCGATAT
AACTTTATCGGGAAGATGGAATCACTTTTGAGAGATGCAAAGGAAGTGGT
GCGACGTGTAGATTCCGTTCATAAGTTCCCCAAAACTTGGACCGATGGCT
ATAAAGTCAGTTCGAATGATTTGATGTTCCATCTCTTCTCTACTTTAGAT
GAAAAGGATATTTTAGGGATTTACAAATATTACAAAGAAGATTTCGATGC
TTTTGATTATGGCCTACCGAGAATTCAACACTCGTATAATAACAAGAATA
ACCTTCTCTTGCGTACTTTAAAAAAGATCTTGAACGGTAAATTAACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033736XLOC_033736Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053439-proteinTCONS_00053439-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053439-exon-scaffold_231-1491911889:272140..272383TCONS_00053439-exon-scaffold_231-1491911889:272140..272383Clytia hemisphaericaexon
TCONS_00053439-exon-scaffold_231-1510915933:272140..272383TCONS_00053439-exon-scaffold_231-1510915933:272140..272383Clytia hemisphaericaexon
TCONS_00053439-exon-scaffold_231-1575043694:272140..272383TCONS_00053439-exon-scaffold_231-1575043694:272140..272383Clytia hemisphaericaexon
TCONS_00053439-exon-scaffold_231-1491911889:273598..274644TCONS_00053439-exon-scaffold_231-1491911889:273598..274644Clytia hemisphaericaexon
TCONS_00053439-exon-scaffold_231-1510915933:273598..274644TCONS_00053439-exon-scaffold_231-1510915933:273598..274644Clytia hemisphaericaexon
TCONS_00053439-exon-scaffold_231-1575043694:273598..274644TCONS_00053439-exon-scaffold_231-1575043694:273598..274644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_231supercontigscaffold_231:272140..274644 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.160533	0	0.363527	0.820371	1.08244	0.597987	0.20639	0.38644	0.712323	0.257932	0	0.592683	3.63002	5.37732	4.18111	2.69693	1.0846	1.12863	0.20952	0.773266	0.883753	0.908485	0.211379	1.17138	0.76992	1.66512	0.750943	0.283779	0.112442	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005331Sulfotransferase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0008146sulfotransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008146 sulfotransferase activity
Blast
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BLAST of TCONS_00053439 vs. Swiss-Prot (Human)
Match: CHSTB (Carbohydrate sulfotransferase 11 OS=Homo sapiens GN=CHST11 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.136e-41
Identity = 87/254 (34.25%), Postives = 140/254 (55.12%), Query Frame = 2 
Query:  347 QQRFLEREQKGHIFVSRVLPVLYCAVPKVASTNWKRMLLLFDGIKSNISEMGVKS-KVHTQRGLRPLYHVKGHAMPKV---IKDSFKFMFVRHPFERLASAYRNKFADN-NTYFEKTYGSRILKMFRKDLSKEEYNRGRGATFQEFVRWIV-----QVEPYDPHWYPATKLCHPCQIRYNFIGKMESLLRDAKEVVRR--VDSVHKFPKTWTDGYKVSSNDLMFHLFSTLDEKDILGIYKYYKEDFDAFDYGLP 1072
            ++R L      H+ V     ++YC VPKVA TNWKR++++  G       M + + + H    L+ L     +++P++   +K   KF+FVR PFERL SAYRNKF    N  F K YG++I+K  RK+ ++E   +G    F+EFV +++     + EP++ HW     LCHPC I Y+ +GK E+L  D+  V++   V S  KFP T+    + +++++    F  +  +    +Y+ YK DF  F+Y +P
Sbjct:   98 KRRVLTPNDLKHLVVDEDHELIYCYVPKVACTNWKRLMMVLTGRGKYSDPMEIPANEAHVSANLKTL---NQYSIPEINHRLKSYMKFLFVREPFERLVSAYRNKFTQKYNISFHKRYGTKIIKRQRKNATQEALRKGDDVKFEEFVAYLIDPHTQREEPFNEHWQTVYSLCHPCHIHYDLVGKYETLEEDSNYVLQLAGVGSYLKFP-TYAKSTR-TTDEMTTEFFQNISSEHQTQLYEVYKLDFLMFNYSVP 346
The following BLAST results are available for this feature:
BLAST of TCONS_00053439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHSTB2.136e-4134.25Carbohydrate sulfotransferase 11 OS=Homo sapiens G... [more]
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