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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053440 ID=TCONS_00053440|Name=TCONS_00053440|organism=Clytia hemisphaerica|type=transcript|length=1070bp
TTTTGATGCATTATTTCATTGAGTTCATACCGAATCCAGTGCAGCAGCAA
CGATTGAATTACCTCCGACATTTTTGTCAAGCTAAACGGAAAAAAGATGG
CGGTACGAGTCTCAGAACATTCATACAGCAGAGGTTTCTTGAGCGAGAGC
AAAAGGGACATATATTCGTTAGTCGCGTTCTACCGGTGCTCTATTGCGCC
GTACCCAAAGTCGCTAGTACGAACTGGAAGAGAATGCTACTTTTGTTCGA
TGGTATAAAGTCAAACATTAGTGAAATGGGTGTCAAATCGAAGGTTCATA
CGCAACGAGGTCTTCGACCCTTGTATCATGTCAAGGGACACGCGATGCCA
AAAGTTATAAAAGACTCTTTCAAGTTTATGTTCGTAAGACACCCTTTTGA
AAGATTAGCATCTGCATACCGGAATAAGTTCGCGGATAACAatacttatt
ttgaaaaaacgtaCGGGTCAAGAATATTGAAAATGTTTCGAAAAGATTTG
AGTAAAGAGGAATATAATCGCGGACGCGGTGCAACTTTTCAAGAATTCGT
TCGCTGGATTGTGCAGGTCGAACCATATGACCCGCATTGGTACCCTGCAA
CCAAACTATGTCACCCATGTCAAATCCGATATAACTTTATCGGGAAGATG
GAATCACTTTTGAGAGATGCAAAGGAAGTGGTGCGACGTGTAGATTCCGT
TCATAAGTTCCCCAAAACTTGGACCGATGGCTATAAAGTCAGTTCGAATG
ATTTGATGTTCCATCTCTTCTCTACTTTAGATGAAAAGGATATTTTAGGG
ATTTACAAATATTACAAAGAAGATTTCGATGCTTTTGATTATGGCCTACC
GAGAATTCAACACTCGTATAATAACAAGAATAACCTTCTCTTGCGTACTT
TAAAAAAGATCTTGAACGGTAAATTAACGTGATGTACAGCAGCAGTTGAA
AATTAACAGCTTTCGAAACTGAATTTATGATAATGTATGATATATTTCAA
TTAGTGAACTTTTGTAACCTTGAATTATCATTTCGAAAAAAGCACAGAAG
CTTAACAAGCATTAGGGGAT Run BLAST on NCBI transcript from alignment at scaffold_231:272189..274644+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053440 ID=TCONS_00053440|Name=TCONS_00053440|organism=Clytia hemisphaerica|type=transcript|length=2456bp|location=Sequence derived from alignment at scaffold_231:272189..274644+ (Clytia hemisphaerica)
TTTTGATGCATTATTTCATTGAGGTAAAACAATAGTGTAGAGAAGAAGTG
AGTTATGTCTAGCTGGGCAGCTCTCTTTCTTTTCTCCTTGTTGACTGGTA
TTACTATTCTGTATTGTGCGTTTCAATTATATCCCGCTGGCACACGATTT
GTGAGTCGTAATAGAGCTCTTGTTCAAGACGACAGTAGCCGTGATGTATG
TAaagaatataaaatttttctgtcAAAATTTATCCCCTCTTTctatcttt
tgttattttgttttttaatatcTATCAAAACTAATTAATTAAGGTGTAAA
TTTTCTCTAAtcaaatttttgaactttttttaaaaatgaatcaATCAAGG
AACGTCTCTAAGCATAACACGTGTCCCTCTTGTACACGcaaataattatc
ataaattaATAAATGACTCGTTCACGCGCGTGCACGAGGCGAACCACATG
TAAACTATGAATGACATTGTTGACAACAAGTTTTGATTgatcaattattt
tttgaaagtgtcaaaTTTTTAAAGTGACAATAACAAACGAATAGAATTGT
GATAAAAACATTGGCCTCaattatttaaatattttacatAAAGCACTATC
CaaatgtaaagaaaaattatctaATCTATTATTTTAGTCATCTTATTTTT
ACTGATAACATATATCCCCTTCAAGAAATTCTAGCCTGGCCAGAAAGACC
ACGAGTGCTCCTAGTATGCTAGACCGAGAGACACCAAAAGAACTGAAAAA
GACCTGTATTGGGCGTTTCGAAATCGGACGTCATGAATTGTAAAAAGGgt
ggaaatttcgaaaatttttttactaTCTATAGCACTGATGATGGCATAAG
ACCGAAAAGCTTCTgcttcaatttttaacaaatgttgttctttttactta
attcgaaaaaaaatatcaagaattattCTTTAGATCAGAAACTTTAACTT
TAAAAGGATTTGATttcgcagactctaaaacacccgatttcttaggaaaa
tagacaaaactaCTCACaagtggtgaaaataagaacatgttaagaacatt
tcaaggcttaaaactcaaaaagttaagaaggcTTCAACGACTCTggatgt
tattataaaaaaacttgtatcatgaaaattataaaattaccTTNttaatt
cgaaaaaaaatatcaagaattattCTTTAGATCAGAAACTTTAACTTTAA
AAGGATTTGATttcgcagactctaaaacacccgatttcttaggaaaatag
acaaaactaCTCACaagtggtgaaaataagaacatgttaagaacatttca
aggcttataactcaaaaagttaagaaggcTTCAACGActctggatgttct
tataaaaaaacttgtatcgagaaaattataaaattaccTTCTTCTTTATC
TTCTTCCAGTTCATACCGAATCCAGTGCAGCAGCAACGATTGAATTACCT
CCGACATTTTTGTCAAGCTAAACGGAAAAAAGATGGCGGTACGAGTCTCA
GAACATTCATACAGCAGAGGTTTCTTGAGCGAGAGCAAAAGGGACATATA
TTCGTTAGTCGCGTTCTACCGGTGCTCTATTGCGCCGTACCCAAAGTCGC
TAGTACGAACTGGAAGAGAATGCTACTTTTGTTCGATGGTATAAAGTCAA
ACATTAGTGAAATGGGTGTCAAATCGAAGGTTCATACGCAACGAGGTCTT
CGACCCTTGTATCATGTCAAGGGACACGCGATGCCAAAAGTTATAAAAGA
CTCTTTCAAGTTTATGTTCGTAAGACACCCTTTTGAAAGATTAGCATCTG
CATACCGGAATAAGTTCGCGGATAACAatacttattttgaaaaaacgtaC
GGGTCAAGAATATTGAAAATGTTTCGAAAAGATTTGAGTAAAGAGGAATA
TAATCGCGGACGCGGTGCAACTTTTCAAGAATTCGTTCGCTGGATTGTGC
AGGTCGAACCATATGACCCGCATTGGTACCCTGCAACCAAACTATGTCAC
CCATGTCAAATCCGATATAACTTTATCGGGAAGATGGAATCACTTTTGAG
AGATGCAAAGGAAGTGGTGCGACGTGTAGATTCCGTTCATAAGTTCCCCA
AAACTTGGACCGATGGCTATAAAGTCAGTTCGAATGATTTGATGTTCCAT
CTCTTCTCTACTTTAGATGAAAAGGATATTTTAGGGATTTACAAATATTA
CAAAGAAGATTTCGATGCTTTTGATTATGGCCTACCGAGAATTCAACACT
CGTATAATAACAAGAATAACCTTCTCTTGCGTACTTTAAAAAAGATCTTG
AACGGTAAATTAACGTGATGTACAGCAGCAGTTGAAAATTAACAGCTTTC
GAAACTGAATTTATGATAATGTATGATATATTTCAATTAGTGAACTTTTG
TAACCTTGAATTATCATTTCGAAAAAAGCACAGAAGCTTAACAAGCATTA
GGGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053440-exon-scaffold_231-1491911889:272189..272211 | TCONS_00053440-exon-scaffold_231-1491911889:272189..272211 | Clytia hemisphaerica | exon |
| TCONS_00053440-exon-scaffold_231-1510915933:272189..272211 | TCONS_00053440-exon-scaffold_231-1510915933:272189..272211 | Clytia hemisphaerica | exon |
| TCONS_00053440-exon-scaffold_231-1575043694:272189..272211 | TCONS_00053440-exon-scaffold_231-1575043694:272189..272211 | Clytia hemisphaerica | exon |
| TCONS_00053440-exon-scaffold_231-1491911889:273598..274644 | TCONS_00053440-exon-scaffold_231-1491911889:273598..274644 | Clytia hemisphaerica | exon |
| TCONS_00053440-exon-scaffold_231-1510915933:273598..274644 | TCONS_00053440-exon-scaffold_231-1510915933:273598..274644 | Clytia hemisphaerica | exon |
| TCONS_00053440-exon-scaffold_231-1575043694:273598..274644 | TCONS_00053440-exon-scaffold_231-1575043694:273598..274644 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_231 | supercontig | scaffold_231:272189..274644 + |
Blast
BLAST of TCONS_00053440 vs. Swiss-Prot (Human)
Match: CHSTB (Carbohydrate sulfotransferase 11 OS=Homo sapiens GN=CHST11 PE=1 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 6.649e-42 Identity = 96/295 (32.54%), Postives = 154/295 (52.20%), Query Frame = 3
Query: 33 NPVQ----------QQRLNYLRHFCQAKRKKDGGTSLRTFIQQRFLEREQKGHIFVSRVLPVLYCAVPKVASTNWKRMLLLFDGIKSNISEMGVKS-KVHTQRGLRPLYHVKGHAMPKV---IKDSFKFMFVRHPFERLASAYRNKFADN-NTYFEKTYGSRILKMFRKDLSKEEYNRGRGATFQEFVRWIV-----QVEPYDPHWYPATKLCHPCQIRYNFIGKMESLLRDAKEVVRR--VDSVHKFPKTWTDGYKVSSNDLMFHLFSTLDEKDILGIYKYYKEDFDAFDYGLP 851
NP+Q Q R + + C+A + TS + +R L H+ V ++YC VPKVA TNWKR++++ G M + + + H L+ L +++P++ +K KF+FVR PFERL SAYRNKF N F K YG++I+K RK+ ++E +G F+EFV +++ + EP++ HW LCHPC I Y+ +GK E+L D+ V++ V S KFP T+ + +++++ F + + +Y+ YK DF F+Y +P
Sbjct: 65 NPIQLELSNTAVLHQMRRDQVTDTCRA----NSATSRK----RRVLTPNDLKHLVVDEDHELIYCYVPKVACTNWKRLMMVLTGRGKYSDPMEIPANEAHVSANLKTL---NQYSIPEINHRLKSYMKFLFVREPFERLVSAYRNKFTQKYNISFHKRYGTKIIKRQRKNATQEALRKGDDVKFEEFVAYLIDPHTQREEPFNEHWQTVYSLCHPCHIHYDLVGKYETLEEDSNYVLQLAGVGSYLKFP-TYAKSTR-TTDEMTTEFFQNISSEHQTQLYEVYKLDFLMFNYSVP 346
The following BLAST results are available for this feature:
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