|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053441 ID=TCONS_00053441|Name=TCONS_00053441|organism=Clytia hemisphaerica|type=transcript|length=1794bp
CGAAGAACTAAATAATGTTGAGAAAACGTTTTGCGTTCTTTAGCTTACTT
GTCTGAAAtattcagtttgaaaaaaagttttttttcttcgattgcacaca
aaaaaaagttttttctatttgcggcagggtgagatatatttttttccaaa
aaaaagttcacccggccgatttccggaaacaagacttttttttttggcct
aaCCTTTACAGGCCTGGCCATGAAGAAAAGCCTGCGTGTGCCATTATAGC
ACTTGTAAGCCTTAAATTTAGACTTTCAATACCTGTTTTTGCTTGATTTA
GGCGTGCTATTTTAGCACTCGCAAATAATTTTACGTGTGTGCTAGCGCGT
GCGCGTGCTATAGCATGCCATTCAAGGCCAGGCCTGCTTTAGAGCCCTTA
TATGGGctgatttttaacattttaagagCCACATTCTCTAAGAACTAGGT
GGGTGGTGTTAGTATGGAATTTTGTTTgccttcatttttggatatttggt
aGACAATAGTGAAAAACTCAGAATCCCAAAGTTTTGGGtcccaaaaatcc
ataatggcggcttgAGGGCAAGttgaaattttggactttttttgccAAGT
GTAAAAGTCTGACNaggaaatatttcaagttgcaactaaggtcacatggg
tttcttttgatttccTGAAAGTACTCACAgtaaagtgtcaaaaaatccaa
aaaaaaccaTGTGACCTTATCGcatttttcataatggcggcctagatatg
gaaaaaaattcactttttaacaaatttaagcCTCAATTATTCAGCCTTGG
AGCATTctaggaattttatttttggcaaaaagtgtTCACCAACTAACAAA
GATCAAATGTTGAAAACTTGAAGTATTTCACTCAACCTGGCTGGGCTCTA
CAAGCTCTACAAGAAGGTGCAAATCTCAAAAAGTGCGATAtttgcctcga
ttattcaagAGTTGCGACTAATGTTGGGAAAAACTGTTAATTGTTCCTGG
TAGAGAAAGTTGCCTAGTTTCAGGAACAAAAATAATACCCATGTGATCTA
TAAGcagatttgagaaaaattaagcCAAAAATTGTTTTAAGTGTGATTTT
TCTAGGCTGGCGAGACAAAAATAAGACCCTGGTTACACCAGAAAACGttt
taaggttttgaaaatcattgaaaagtaatattttccACCCCaggaatgaa
aaaaatccaaatttcttTAAGCATTGTGTAAGCCTGGAATTGTCAGTAGC
CTCTGTAGATCCCTTGTAAAGTGACTGGATCTTTGGGAATTATGGGGGTC
TGTTGTTGATATAGCAAATTTTCAGGGACTTTAATCAAATATTTGAACAA
AAGGAATAGCTGGAAATGATTTTCTGAGGAACCTCACCAATATCTCTCAA
AATTTCTCTTAAATGTAACAAGTCTTACAAACCAGTATCTGTTTCCTGGG
TAACTGAAGGTTGTTTTAAACTTgagattttgtaaatttttggcTACATG
AGGTTTTCTTAGTATTTGTAGATGgcaaaatggaaattttgggGTTCAGT
AAATATCTGATTTTCAATAATATGTCAGTATACCAtggaaactttagaaa
aaaatcaacaacatgGGTCAGAATCACTTCTAATCAGCTCACAGGACTCA
TCCAAATTGGACTTAACTCTATGAAATAAAGAGCccaaatgttatttttg
tggccaaaacccaccagtaaaccactccaggtcaaaagtttgcttcaaaa
aagtcccaaggaccatcagcagacagctaaaagtgcttctaAAC Run BLAST on NCBI transcript from alignment at scaffold_231:300297..302240+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053441 ID=TCONS_00053441|Name=TCONS_00053441|organism=Clytia hemisphaerica|type=transcript|length=1944bp|location=Sequence derived from alignment at scaffold_231:300297..302240+ (Clytia hemisphaerica)
CGAAGAACTAAATAATGTTGAGAAAACGTTTTGCGTTCTTTAGCTTACTT
GTCTGAAAtattcagtttgaaaaaaagttttttttcttcgattgcacaca
aaaaaaagttttttctatttgcggcagggtgagatatatttttttccaaa
aaaaagttcacccggccgatttccggaaacaagacttttttttttggcct
aaCCTTTACAGGCCTGGCCATGAAGAAAAGCCTGCGTGTGCCATTATAGC
ACTTGTAAGCCTTAAATTTAGACTTTCAATACCTGTTTTTGCTTGATTTA
GGCGTGCTATTTTAGCACTCGCAAATAATTTTACGTGTGTGCTAGCGCGT
GCGCGTGCTATAGCATGCCATTCAAGGCCAGGCCTGCTTTAGAGCCCTTA
TATGGGctgatttttaacattttaagagCCACATTCTCTAAGAACTAGGT
GGGTGGTGTTAGTATGGAATTTTGTTTgccttcatttttggatatttggt
aGACAATAGTGAAAAACTCAGAATCCCAAAGTTTTGGGtcccaaaaatcc
ataatggcggcttgAGGGCAAGttgaaattttggactttttttgccAAGT
GTAAAAGTCTGACNaggaaatatttcaagttgcaactaaggtcacatggg
tttcttttgatttccTGAAAGTACTCACAgtaaagtgtcaaaaaatccaa
aaaaaaccaTGTGACCTTATCGcatttttcataatggcggcctagatatg
gaaaaaaattcactttttaacaaatttaagcCTCAATTATTCAGCCTTGG
AGCATTctaggaattttatttttggcaaaaagtgtTCACCAACTAACAAA
GATCAAATGTTGAAAACTTGAAGTATTTCACTCAACCTGGCTGGGCTCTA
CAAGCTCTACAAGAAGGTGCAAATCTCAAAAAGTGCGATAtttgcctcga
ttattcaagAGTTGCGACTAATGTTGGGAAAAACTGTTAATTGTTCCTGG
TAGAGAAAGTTGCCTAGTTTCAGGAACAAAAATAATACCCATGTGATCTA
TAAGcagatttgagaaaaattaagcCAAAAATTGTTTTAAGTGTGATTTT
TCTAGGCTGGCGAGACAAAAATAAGACCCTGGTTACACCAGAAAACGttt
taaggttttgaaaatcattgaaaagtaatattttccACCCCaggaatgaa
aaaaatccaaatttcttTAAGCATTGTGTAAGCCTGGAATTGTCAGTAGC
CTCTGTAGATCCCTTGTAAAGTGACTGGATCTTTGGGAATTATGGGGGTC
TGTTGTTGATATAGCAAATTTTCAGGGACTTTAATCAAATATTTGAACAA
AAGGAATAGCTGGAAATGATTTTCTGAGGAACCTCACCAATATCTCTCAA
AATTTCTCTTAAATGTAACAAGTCTTACAAACCAGTATCTGTTTCCTGGG
TAACTGAAGGTTGTTTTAAACTTgagattttgtaaatttttggcTACATG
AGGTTTTCTTAGTATTTGTAGATGgcaaaatggaaattttgggGTTCAGT
AAATATCTGATTTTCAATAATATGTCAGTATACCATNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAtggaaactttagaaa
aaaatcaacaacatgGGTCAGAATCACTTCTAATCAGCTCACAGGACTCA
TCCAAATTGGACTTAACTCTATGAAATAAAGAGCccaaatgttatttttg
tggccaaaacccaccagtaaaccactccaggtcaaaagtttgcttcaaaa
aagtcccaaggaccatcagcagacagctaaaagtgcttctaAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053441-exon-scaffold_231-1491911889:300297..301880 | TCONS_00053441-exon-scaffold_231-1491911889:300297..301880 | Clytia hemisphaerica | exon |
| TCONS_00053441-exon-scaffold_231-1510915933:300297..301880 | TCONS_00053441-exon-scaffold_231-1510915933:300297..301880 | Clytia hemisphaerica | exon |
| TCONS_00053441-exon-scaffold_231-1575043694:300297..301880 | TCONS_00053441-exon-scaffold_231-1575043694:300297..301880 | Clytia hemisphaerica | exon |
| TCONS_00053441-exon-scaffold_231-1491911889:302031..302240 | TCONS_00053441-exon-scaffold_231-1491911889:302031..302240 | Clytia hemisphaerica | exon |
| TCONS_00053441-exon-scaffold_231-1510915933:302031..302240 | TCONS_00053441-exon-scaffold_231-1510915933:302031..302240 | Clytia hemisphaerica | exon |
| TCONS_00053441-exon-scaffold_231-1575043694:302031..302240 | TCONS_00053441-exon-scaffold_231-1575043694:302031..302240 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_231 | supercontig | scaffold_231:300297..302240 + |
Blast
The following BLAST results are available for this feature:
|
