TCONS_00053445 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053445
Unique NameTCONS_00053445
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053445 ID=TCONS_00053445|Name=TCONS_00053445|organism=Clytia hemisphaerica|type=transcript|length=1455bp
AACTTTATGGAACTGCTGTCGAGAAATTGAAATTAGAACAACAAACTTTT
GAGacTCCGTCTAaaaagaaagttgaaatttCAACTATTGGAAGTAACTA
CCATATTGAAGTAAATCCAAGTGACGCCGGAATTTACGATCGACTAGTGA
TTCAAGAATTGATTAAAACAACAGCTTCAACACATCAATTTGATCCAAAT
tcacaaaaatctttcaaagTTGTGTTGTTAATGGAGACGGACCGTTTAAC
GAAAGATGCCCAACATGCATTGCGGCGCACAATGGAGAAATACGTCACCA
CATGTCGTCTCATCCTGTGTTGTAATTCAACGAGTAAAGTAATTCCTGCC
ATCAGGAGTAGATGTCTTGGTATTCGTGTTGCTGCCCCATCTAAGGAAGA
GATAACACAATGTCTGTACACTGTTTGCAAGAAGGAAAGTCTCAGTCTGC
CCGAAGGTTTAGCACAACGTATTGCACAGAAATGCAAAGGAAACCTCAGA
AGAGCTCTACTCATGTGCGAGGCTTGCCGAGTTCAACAGTATCCGTTTAC
AGCCGATCAATCAATCCAGGATGCTGATTGGGAAATCTTTTTGAAACAGA
CTGCTTCTTCAATCATTGAACAGCAAACACCGAAAAGATTACTGGAAGTC
AGAACTCGTTTTTACGAGCTGTTGACACATTGTATACCagctgacgtcat
catgaaGGGCCTACTCGGTGAATTGTTAAAGAACTGTGACGGAACATTGA
AATCGGAGGTGATCCAACTAGCAGCGCACTACGAACATAGACTTCAACTG
GGTACGAAACCGATTTATCACCTGGAAGCTTTCGTTGCCAAATTCATGAG
CATCTACAAACGCTTCCTGGAAGAGGGAATGGCTgacatgttttgatttt
cacaGACTTCAAAACATACTCCTATATTGGAAACCTCATCTTTGTAAAGT
TTCGTACTTGGACGGGTGAATAGTCGATTCATGAAAACGATAATAGGTTA
ATTGCGCTCATATATTCTGTTCTTTTATGTGGCACAAATGCGAAAGTCGG
GTGTTCGCATAATTATTATGATTTTTATGTCTATTGTGTCGGCTGAATTG
GATGAAAGACAATGATTATGTGATTATATTCTGCAAGGCGTGAAAATAAG
ACAATAAACAAACAATTTCATCGGTTTTGAAGTTCGAGAGCTCTTTCTCG
CTCTAATTGTTTCGTTTCATTTTTTGTACTACAGTATAGNTGAAGTTCGA
GAGCTCTTTCTCGCTCAAATTGTTTCGTTTCATTTTTTGTACTACAGTAT
AGTAATCCTTAAATAAAAATAACGATGAAGCACAGCAAGTTTTGCAGATC
TTCCCTTTCCAACACCAAACACATCTTTAGCAATTTTATTACGGCCAAAC
GTTCAGTTTGAATAAACGAAAACAATTTCGAGTTCAATCtgtactaaagt
ctgtt
Run BLAST on NCBI

transcript from alignment at scaffold_231:328433..342666+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053445 ID=TCONS_00053445|Name=TCONS_00053445|organism=Clytia hemisphaerica|type=transcript|length=14234bp|location=Sequence derived from alignment at scaffold_231:328433..342666+ (Clytia hemisphaerica)
AACTTTATGGAACTGCTGTCGAGAAATTGAAATTAGAACAACAAACTTTT
GAGGTATTTCAATATGTTTTGACTAAAAACTCTAAACCTTATTAATTACC
TGTCAAACCTTTGTTCCTTGAAACCTAATTTTATTCACAGATgaacttgt
tttttttgtcacgcaaaccaattttttttgtttacagacTCCGTCTAaaa
agaaagttgaaatttCAACTATTGGAAGTAACTACCATATTGAAGTAAAT
CCAAGGTAACAACCATATTAGATTTCATTAAATCTCTGAAAATAATTTAG
GAATTACTCAAAGTGACGGATTCTCTATCCTCTTTTAGAAAAGGTTTAAA
ATAAACTTTTGAGTCTCTAAAAACATAATGGAGGGAACCCACAACCTGCA
GGCAAGAAATTATTATAGTcactggaaaaacaactagctgatttttgcca
atttctcatgtacaagccttgtccacAGTAATGACagtattgttcaccct
ccttccaccattaaagTGATTCTTCGTAGCATTTTGATTGCAtttatcat
caaaatacacttatccaattcccaaattaCTAATTATAcatcgttatgac
gttttaaattgcgagaaagatgcaaaacatcttatgtataagaaatttga
atattgacacccaaaatctttaaacttcaacctcaaaaaatccaccgtgc
caccacgtgccaccaaaagattttcacaccacagtggagctatgagactc
atgtcaatctcagctcttctcggagaaatattagaaagattttcccaatg
gaaattttgtatcattataagcattttgtttgattttactgcAGGTGACA
GTGGGAAACAGGGTGGAAATCAGATCTTCCAGTAGAATAATAAACGTACA
AAAAGGATCGTAGGTACAGggaagatttgaaaattttcttaggGCAAAGG
CCGTAAcgggaaatttgaattttatgagCTTAAAATCAGACAAATTCATT
ATGCCGAGCGGACGCTGTCTAGAGTGAGTGGAACGAAGGCTAAGGAAAAG
CATCGTAGATGCGTCCCATAAGTGATGCAAATGGAATATAATGAGTAAAT
GTCAATTTTGTAAACGCCATCTGTGACTTAGATTGTTTTCTCTTTTCGAA
ATATAAACATGAAGTAAACTATGATAtgaaatcaatcaatcagtaaTCAA
ATcttaagtaaataaaaatgtaaataagaAGTTATCTTCCTAATTTTCCT
CTACCTCTGTTGTAACctcaaaaacaagaaagtattttttagttttatcG
CATTGAACTTTTTTAACACTATAAAGTAGGGAGGTGGGACGGGAATGGGT
TCGTCTAATTTTAGGCTCATCAACTTCAAATTTCCCATTACAGCCTTTGG
CctaggaaaattttcaaattttatatcacTTAAAATCAGACGAATTCATT
ATGCCGAGCGGACGCAGTCTAGAGTGAGTGTTCACTTAGGCTTGTGGAAA
GCCAGCTAAGTCCTTGTTTATAGCTTCATTGTCCTTTAGGAGCAAGTTTT
GGTACTTTTCTGCTGTACTAAagttcttgttgtagaatttctGCCATACC
GACGTGTTAGACCAATTACCCATTTTTAGAATGTCTGTCATGTTGGCTCC
CTTTTGGTGTGCTTTGGAGGTCGAGGCTGATCTCTTAGAATGGGCTTGGA
AAATGGCAGTGTCTATGCCTGCCATCTTCAACATTTCTTTGACCCATCTG
GCTGTCGTTTCTTTCCCAATGGACTTGTGTGGTTCAACATAGCTTAAGAA
CTTCTTCGATGTTTTATGTCAGTCTCCGAATCTTTTTGTGAGTTCGATAT
AACTTGTTAAAATATTGTAAGGGCATTAGTGAGGTTtgttagcacataaa
aacgtaagaatacttcggatgatcaaatttggtcaatttgtttcAAAATC
ACAACGTTCATAAcctttgataggaagattttcaaggcatggtttttttc
atcagcatttcatgctctttccgctggaaccattaaagattttcaatatt
ttcaaaaaaataattttttgcccagccacctgatgacttCATTTAGCAGG
TGGTAAAATTTGGTGTtcctgtttaaaattaagttttagaccctctaagg
atatcatctgtgccaaatttcatacttttatcaccatctgaagtattttc
gTGCTTGCAGACCTCACTACATAGTTTAATATTCCCTTCAAAGTTCCTAA
CTTCAATGGGTTCTGCTTTTTTCCCTTGTTTGAAGTGTTTTGTAGGTTTG
TTTAAGTGGAAAATAATGTTGGATAAGGGAAGAAGCTGCTTGTGATAGTT
TGCCTGAGAACTTTTGTTTCCCGAGATTTCCCATACCGCTAGGTTGAGGG
TTTGGTTCAGTATTAGAGGGTGGATAATAGTGGAGTCCTACCTTCCCATC
AGCTTTATGTCCAAATTTGTTAGTTCGGAGCCCCTGTTAGGTGCTAGTAT
TCCTAaaagttttattgtttttagtGTGAGGTCTTTCAATTGTAGTGACT
CATTATTTGACCACCCCCTTTATATAATTGAGCACGGTGTCGATATCCCA
TATTTCATTGTATTTAGGGAGCTGGGGTCTTTGTCTTGATACTCCTTTTA
ATAGAGAGGTGACCGTGGGGTGTTGTCCTGCAGGCGAGGCCTCAACTGGT
TGGTGATTGAACGAGATATCTGACTTATGTACATTTATTGTGCTATACTT
TTTCCCTTCTTCAAAAAGGGTACCTAAGTAATTGGCCACTTTCTCTATAG
GGGCTGAAATGGGACCAGTTTCCTCCCTATAACACCAGCTGCTGAAGCTT
TTCCAGGCTGACAGATAATGTTTTCTAGTTCCCTCTGCCTTGGACTGTTG
GATAAGGGAAGAAGCTGCTTGTGATAGTTTGCCTGAAGGCTTTTGTTTCC
CGAGATTTCCCATACCGCTAGGTGGAGGGTTTGGTTCAGTATTAGAGGGT
GGATCTCCCTGAAGGATGTGTTAAAGTGTTTTCCCTCATTACTATCTTTC
TTGGGTTTGATATTAGCATTCCCAATAAGACTGGGTACCAAGTTTGAGTT
GTCCAAATTGGGGATACTAGGATCACTGTTGCTTTGGATCTCCTTACTTT
TTCCGGACACCTCCCTATTAGGGAGAATGGGGGAAAAGCATACATTAGGT
TTTTGTCCCAGGGTTGGTTCAGTGCATTTACTGCTAGGCAGTGTTGGTCT
GGTTTCCAACTGTAGTAAGTCTCTAGTTGGTGAGAGGTTCTTGAGGCAAA
AAGATCGATTTCTGGGGGTCACATTCATTATGTGTTTGAACGTTTGCCTT
GCTAGTTTCCAGTCCGCCAATCTTTTGCATTCCTGGACTCGAAGTCTGCC
TCCTTGTTTAGGGTCGATGGAATATATTCTGCAGTGAGGCTGATGTTCTT
TTGGTTCAAAAATGACCAGATCTTTTTTGCCAGGCTTATTAGGGTAGAGT
TTTCCGATCCATTTTTACAATGTTTGCCAGGGCTACTTGGCTGTCTATCA
GTAGATGTACTGACCTTTTAAGTGATCCCCCTATAAAGGATTTCAGTGCT
ACCAGGGCTGCTTTCATTTCTAGGATATTGATGTGTTCCCTTTTCTCTGA
CTCTGTCCATAGCCCTCCTGTGGAGCTTTGACCACAATTAGCTCCCCATC
CCCCCATTTTTCCCTTTGCTGCATCAGAGCTTTTAATTAAATCTGGGGGA
CGAATGTTTATGTCCTTGCCGTTTTCTGAAGAGAAGTTTCCTATCCACCA
CTTTAACTCTTTTTTTGCAGAGTTTTCTAGTTTCGTCATTGAGCCGTAAT
GTTGTTTGTTTTTCGCTAGCTGTTTGTTCATGCATTTCTGCAAGAGTCTT
ATCTGAAGAGGAGCTAGAGTGAAGGCTGGAGCTATTGCCATTAGATTCCC
TATTAGGCTTGCAAGTTTCCATATAGGGGAGCTCTTCAGATTTAGCATTT
GGAcacaaagttttttcaattttagcattttctctTGAGGGACTTTGAAT
ATCATGCTGAAGCTGTTTATCAGGACCCCCAGGTATTCCATTAGTTGGCA
TGGTGTCAGCACTGACTTCTCTATGTTTATTTTGAATCCTAGGTTCTCCA
GTAAGAAGATCGTTGTGTCTCTGGAGAAGATGGCTCCTCCTTTCACCTTG
CTACGATCAGGATGTCGTCTATATAGGTTATCAGTTTTATCTGTAATCTT
CTCCATAGAGAAATGGGCACCCTAACAGATCTGGCCTTAGTCCAAACATT
AGGCATTGAAACTCGTATAGGTTTCCCTCCCAGCTGAATCACTCATACTT
CATCGACTGAGGGTGTATTGGGACAGAAAAATATGCATCTTTTAGATCCA
CTTTGACCATGAAGTACCCCTTCTGAAGAATGCTCTTTACATCCCTTAGC
GTCTCCTTCTTGAATTTTTGGTATGGGATATGAGAGTTGAGTTGAGTTTA
TCACAGGTCTGAATTTCCCTggttcttttttctctttcaaaAACAGAGTG
GACAGAATCTTGCCTTGCTTGTAAAGAAAACTCTCTTTACAGCCCCTTTT
CCCAGTAAAGTTCTTATCTCTGCCCGTATTAGAGCTTTCATGTTTGAGTC
GAAATTTATTTGCCTTGGTGGTGTCTTTTGGATTGGTTTTCCCACTACTG
ATATTGGCAAGCCTGAGATGGTCTCCAGGATGCATGGGTCTTGGGTTATT
TTGGCccaattcttttgaaataattttgttttgccAGCAATCAATGTTGA
CTGGGTTACTATTATCTCTTCTAGGAGATTTTCTATCCCTGGGTGTATTT
TTTTCAGGGTAGTGTCTTTGAAACTCTAACTGAGCATTTACTTGACTGGA
AAGTTAAGCTTGGTAGATGTTCTCTTACCTCTCCATTTCTTGTTGGATGG
ATGTCTGTTGTTTGAGCCATGTCCTTCAGCAGAGGGATGTTGACGCTCTT
CTCCACAGCTCGTCTGGGGAGAGCTTCATAAAAAGGGTTTTCTTTTTGGG
TCCTGTAGTCGTCTGGAAAATATGTATTGTTTCAGAGAAGTGTAGCCTGC
TGCTTTGGATTGTTTTGTTAGAGTGTCCacattttctttccaaataaTTT
ACCAGCACTGTTTTCTAGGTCATCAACCAATGTTTCTCGTAACCAGCTTC
CTACCTCACTTTCCTTGATACCTAGGGCAGTCAACGCATTCTTACGTCTG
AAGAAGTTGGTAGCGTTTATTGCTTGGCCAACCAATAAGATAGCTTGTTG
GAATCGTTTAGCTATTTCTTCGAGGTCAATTTTTTCGCAGACATCGCCAG
TGCGTGTTTCTTAAATATTCTGCCAGATTAAGGCAAGTGGAGCAAAAAAG
TCTCGTATCTTGGATGATATTCGAGAAATGGATTTGTCTACGGCTAGGGT
TTTAGTTACCATGTAGCCTTTCTCTTTCAGTAGGGTGTCAGTTAAAGTGT
CCATTTTTAATGTATTCGACACATTAGAGGGAACTGGTATTTCCTCCAGC
ACCATTGCAGATATATCTTTATCTGATAAATACTTTGTGATGAGACCGTT
CAAATATTGGGCTAGTCTTTGTTCTAGCATCCAGCCACTACTATCCTCTT
TCATTTGAAATAAGAGAGGTTGTCCACGTTCTGGTGACTTTGTAGGGGAT
TTACTTCTCCTTCTACGTTTGTTCtggattttttcttcctttttcgaCGT
CTTCCTTCttctgatgatgatgatgatgacgaaCTTGTGCTGTTTGTATC
GGACGAGGAACTCTCTGAAGATGAACCGGAAGGAGATCTTTGTCTCTTTT
TGTGTTTACTGTAAGTTCTTCTTCCTTCCTCTCCAACTTTGGGATCGGTT
TCTGCTACGATGCCCTTGATATTTCTCGATTCAGTTGCATCACTATTCAC
TTTCGGTGCAGCGGATTTAACCGCCATCTTGATTCTTTGAGCAGCGGAAG
TGAAAAAAAAGACTTAGCCGGCGTTCCGCAAGCCTAAGTGAACACTCACT
CTGGACTGCGTCTGTTCGGCATAATGAATTCGTCTGATTTTAAGCGATAT
AAAATTATATTGGCTTTCAAAGCAATTGTTTTATTCCTGAATGAACCTAA
CCTAAACTATGTTTTCAGGCATCGCGCAGAATTTACGTTACAATTTTTGA
CATGAAACAAATCCGGGGGTTTTGAAGTGAATCTGTCCTCTCTTAAGAAA
CACCAAACTTGCTTAGATTTGttagtttgtaaaaaaatttgaagcgATAA
TGTAAAGGttactttttatatatttttttgaaaaattgacaaacTTTAAG
AGAGCAGGAAAGATGTAAATTGAGTAGCTTTCAATTTCCCAACCCTCAAG
AAAGAAAGTTTAACCCTTTCTCTTTTCAACGGTGTATAAATTATGTTTCA
GACTATTTTGTCCTAAAGATAGGAACTTTCActctgacgaaaaaaaaata
aaggctGATAAATTCTGACGTTAATGACAAAAATGATTACAGAGATTCAA
GTAAGTTTGGACAATTTTCCCACCCATCGCAAGTGAAAGAGGAtacaaaa
tgctaaaaaaagatatataaaaACGTACAGGTTATAATCCAATTTTACTG
GATTTTTTTGCCTTGAagttatatcttttttcaaatgtttaacATCAATT
TTAACGTCACGTTTCAATGGAAGCAccacttcgaaaaaaaaatctcttta
tcTTACAAATCACCGACACTTATCTACTCATTCTCTTTAGTTTTTGATGT
CCAAAAATGAATCaccattaataaaaacaaagtttggaTAAATAGAGGCT
CCCATCGAAAACTGAATTTCTTAGGGAGGAAAGTCTGTACTGtagtgaaa
actgaagcaaacaaagcattccatttctATACATACATACTTctgtaatt
ttttctcaaagtcttttcaaaatatcaataatatcacaatattttaggat
taatttttagaaaaatcatattttcttCTCGAAACCAAACTCACAAAtga
aatgttttgattgcaacattttcgaatctttcgaatacgtgacgcaattt
gattggcagAAAATAGAACTCGCGCGAAaaacaatgcaacgacttcattt
tTGAGATGACAAAAAGTGCTACATCAATTCTGTGCGATGggtggttcaga
actagggaagcttttcctgtaccaccccttaattttttatctatagATAA
GAAAATCAAATTGCTACAATACAATTccaaatcacatcttcaaaatGAGA
TCCCACAGGTTGTGATGTTGAATGCTCCTTGATTCGAGTGACGAGATGAC
GGCTAGTCTGGCCGACATAGCAAGCGTCGCAGCTTGGACAAACAATATGA
TAAACCACTCGACTTTTTAGAGGCTTTTCAACTTCAGCTTTTAGAGAAAT
AGAATTCTACtgaaaatttgacaatttgAACGGCCTGTTAAGCTTGGTAC
ACACGTGTGCAAAATATTGCGCCTAAGTGCGTTTAAGTGCGCCTGAGTGC
GTTTATCAGTTAGGTGCACTTAAACGCCATTTATGTACTCACTACAAAGT
GACTTGAATAGAAGAGAGGGAAAAAGGAGTTAGACACACTTAAACGCGAT
GAAAAAATCCCCCTCtttcttcaaatttcaaaagagcTGAATAGTGTTTG
CACGCAGTGTCTTTGATGATCGCGTCGAAATATCAAACCTTTTTGATATT
CGCGTTTAAGTGGGCCTAGCAAAATCAAGGCCTTTATGTTCGTCTAGAAA
AATCAAGGTTTTTATGTGCGTCTAAGTGCGCTTCAGTGCGCAAGTGAGTA
CCAACCTTTACTGTCAGAAAAGTCATCACGCTCAAGATGTGAAAGTTTTG
AGGGgtccaaaaaatttattttatctttAAGCTAAATTAAAGTTGGAAGT
TTACAGAAAATTTTATGTTAAGACCTTTCTTATTTCAGTAGCTATTAACA
TCATTTGTTTCCCAACTAAACAAAAAGAAGTACGAACAGGGTTTTAAGGA
ACTTAATTTTGGTGAGAACCCAAAATTAGCTccgccaaaatttaaaagtt
cTCTTAAGAACTGAAAGATAGAAATAGCATAGAATATGAAAGGATAAATC
GGTCAAAAATTCGTTAGACACTGCCCAGTCAATGCAGAAATTATAGATCT
CAAAATAAAGTCACAAAGTAAGTAATATATGATCATGAGAAGAAAATCGT
GCAGGGGAGAAAATAACCCAGACCTGACTGATTGCGTGATTTTTGTACAA
AAGGTGACAGGAATTTGATTGTGTGAAACATTTATTTGGAAAtgaattga
aattattttatttcagTGACGCCGGAATTTACGATCGACTAGTGATTCAA
GAATTGATTAAAACAACAGCTTCAACACATCAATTTGATCCAAATtcaca
aaaatctttcaaaggtACGGAAAATAAAATACCGTCGTTTAAAGCAATGC
TCAAATTCAATTAATATTTAGAAAATTATAAAGGGGTACTTGGGTGTCGT
GTATCGTGTGTAGTTTAAATAGTAGTCAAGTAAAAATAGGTTTTACCTTA
GATTCATTTTAAGCCTGGTTTAAAAATAGAAGATGACGTCACCAGGTTAT
ATGACAAATTCTACTTCATCTTGAGCAATTCTAAGGGATCTAATTGGCga
gattttaaaaacaaaaccatttTCTTTATGTACTTTTCATGATCTTTCAG
ATTTCTTGTTTTTTAGCTAATTCAACCAACTATATAGgtgtcaaaaacat
ttttgaatatTACGATACAATGTCGCTTCGGATTAATAAAAGTTAGTGAA
TTCTAtttttccatcttctttcttcagTTGTGTTGTTAATGGAGACGGAC
CGTTTAACGAAAGATGCCCAACATGCATTGCGGCGCACAATGGAGAAATA
CGTCACCACATGTCGTCTCATCCTGTGTTGTAATTCAACGAGTAAAGTAA
TTCCTGCCATCAGGAGTAGATGTCTTGGTATTCGTGTTGCTGCCCCATCT
AAGGAAGAGGTAAGacctttttcaatatttttctttttctaatcaTATAA
TGTAAAGCTGCGTCTCCTTTCGAAATGCCGGATCACGAAGCTAGTTTCTC
AAGTCTCTCCTTTTACAATGATTGCCCTTCGAATTTTTGTCGTCTAGTAA
CTTTATAAGTGTTCATCTTTAatcctattcatactaggcttttaggggcg
gttcaaaactaggggggcttttcctgtaccacccctttaAACTTTTAATC
TAGGGATTCTTTTTGGATGACATTTGGCACACGAGATCCTTGTCatgtaa
ggtaacttttgacaaaatatttttttgatgacgtcactcatcatgccgaa
aatgattaaaaaccgaaaatttcctttgttcttataaatagctattgtat
tctaaaatgcttattttatcctaaatattcaactcccgaacagaaacagc
ctcCTAAGTAGTACGAATATGGTTAAGGTGCAAATGCCATTCATTTACAT
TTTTCGAAATAAAGCGTGCGTGTGCTTTGTGTCAGATTTATATTTGAGAT
atccaatgtatagcaatgtgcccatcccggttattaccataatggccata
atatttgagataTCTCACTTTTCAACCTTTCAACATTCCTCCAACTGTTG
TAGATAACACAATGTCTGTACACTGTTTGCAAGAAGGAAAGTCTCAGTCT
GCCCGAAGGTTTAGCACAACGTATTGCACAGAAATGCAAAGGAAACCTCA
GAAGAGCTCTACTCATGTGCGAGGCTTGCCGAGTTCAACAGTAAgctttt
taactaatatttgtgttttaatttgttcattaGGACAAGGAGAGTTTACT
GAATATATATTGCCAAACGTGCATCAAATCATCGCTAATTGTCAATTTAA
GtaatcattttaaaaatcatttggaAAGGAGACCGCAAATGACTGATATT
TCTCGAGAAGAGTGAATTAAACTATACAATCATTTCTTGTGACAGGTATC
CGTTTACAGCCGATCAATCAATCCAGGATGCTGATTGGGAAATCTTTTTG
AAACAGACTGCTTCTTCAATCATTGAACAGCAAACACCGAAAAGGTTCGT
CATGATATTACTGCTTATTTTAACATGTACTTACAGTTTGACGTAGCGAC
TCATTAAACACCaatgaaaatttagttttcctGCTGAGATACTGCTTACT
TCTTTTTaccttgtttttttatttccacATATTTGGCATTTTAAACACCG
ATAGACTTGGTTACACTTTACCAGTAAGGAATGACGTCAAATGGTTGTAG
tcattgaaatgagtttctcaAAGACACATCTGTACAGAATTTTGACATCA
TCCCTTCCTGGTAAACTCGGCCAATTTCATAGGTGTATTGAGGTGGAATC
AGCAATCTGATCTCTATTTGGTCTCTCTTACTTCTATATTTGTAGATTAC
TGGAAGTCAGAACTCGTTTTTACGAGCTGTTGACACATTGTATACCagct
gacgtcatcatgaaGGTACCTGCTCGTTGTTGTTTGAGGTGTGGCTAAAT
CCTGCCCTAAcggaaagaaaaaattgaaaaatactttaGTGGGATTTCGT
GGGGATTAAATTTAGCGGTTGAgctttttcgcgaaattttaagatttcgc
agGGACTTAATTTCGAGGATGGCATTTTCaagagattttaaattttgtgt
ctttttactgccaaattatacatactggttgttgaaatacgcattattag
cgcttctttgatacCAGAGTTAACATTTTAAGTAGTtatccagggggggg
gtcatgcagttagtACCAGACACTATGGGTACTAACtgcaaaatccaaat
tttgaaatacaccCACCACCCTTCTGCAGTTAGTACCCTAAAGTACTAAC
TGCATTTGGGTCGAAAATTGGATACCACCCCTAATTAAGCAGTAAGCACC
TCTGATACTATTTGTTTTACATAGAAAAGAATAATTCCCCCCTGTTTTCG
GTTCTAAATGACCCGGAATAAGCTCATAAACCTGATAACacagaaaaacc
ttttttgtgAGCCTTATCTGACAACAAGACCTTTCCAAATTTCAAtaggg
acttaatttcgcaatGACATCTAAATCTGGGAAATCCACGAAAtttaaaa
cttgttcgagtttaTAGGATACGTAtggtgtataaaattcccgtccgaga
gtttCCCCAATTTTTAGGGTTAACCTGTTTcagaaatccaatgattgtat
taCCCTCtagtcatttttttttattcaatcagattcaatttaatgaaatt
taaagatctctcatataaaataaaacttgtTATCAAGTTTATTAAGTTTC
TAAACTCTTGGAttggaattttatacacgataccatcccctatatcaaaa
catatcaaaggGGATGCATGCAGACTTATATAGGTTTGAGCTTGAAACGG
ACCTATTTCAAGGGTGAAGCCCtgttcaggggggggggtcattcaATTGG
TACCAGACATCATGATGACTAactgcaaaattgaaaatttgtaagtACAC
CCACTAAGTGCATTTGACTATTGACAGGTTGACACCACCCCTATTCGCAC
TTATTTCTATTTGATTCAGGATAAATACGAAGCCCAAAACAAATACTTTT
GCAATGCTAGAGAAGACATTGcagttaaataaaaacaaaaaactgctGAC
GAGCATAACATAACGTATGTCATGTTGACAtaagcgagattatgtatcgg
agatattctacggctacggtttcGGGGCTGCCCGTACGGGTCGTCatcaa
aggcgacatgtcgttgtctactttgctttgtacgggaaaaacaccaaaac
accttagaagcaaagtcgacataatgccgtacgtcaattATCGAaattgc
tttcacccgccattactcgCCATTACCCTCGCCActtcaaccgtagccgt
agagaattccagatacataatctcgctatacTTTAAATAGCTCCACACTA
TGTCAAAAGAAGCAATCTTTGACATGGGATTTAAGATTTGATTGGTAAGT
CCAGAGAGTAAAACAAATAAAGTCTAACAAATAAAGTCTAAAAAAAGCTA
TTTCcagcagttagtaccctaatAGTACCATTTGATTGACTTAAAATTTA
TATCACACCACCTCTCTAACTGTCATGATGTCTGGTACCAAGTGCATGAT
TTTTACATGTACAGGAGaaagttttgggaaaaaaaCTTACCACTTTTCCA
ATCTTTCACACTTTTACAACTTTCCTAACCAAAACTTTGTAAATGTTTGT
AAAAAGGGGGAATTTTCCATGGTTGCAACACGAAAGcacgaaatagaaaa
tatttgcataattgttttcaagtaaaagTGACCTTAGAAAATCGTAATTT
ATGCCCTCTATAATTTATTCTTtcatgaaatcgaaagtgaaagttctTTA
TTCAATTGCTATTGGAGGATGATACGCATAATTTTCAGCCGAGTCTGGAA
TAATCATAGATCCAATTTTTCCaccaaaataccaaaacttTGCAAATCCA
AATGATTGCTGTTGTTGGCTGGGAaagtttggaaatatttttcgcATCTT
CAGAACTTTCAAGGAACTTCTTTTGAGGTGGGAAAAATAGTAAGACATTT
TACAACTTTTATggtttttacaacttttttagaCCAAAACTTTGACTTTT
TGATGGGAAAAGTGGGAGAATTAGCATATTTATGTACCAAAACTTTCTCC
TGGTATACACGATTTCTTTTTCACCTCgtgttgaaaaaaaatgtgcgtct
gtttttattttattttgcaatCCTGCAAATTGTTTAGACGATGATATCTT
TGCCTTGCaatgttttttgaaagaacAGCCTCCATCTGCAATCTCTCAAA
CTCCCGTTTTTGGGCCAACAGTTTTACAATTAAAACTGAATGAATTTGCA
TTAGCAGAAGGCTAAGCGATAATATTGTGGTGATACTAGAAATTAACATC
GATAAGCTTTTTCCATCAAGAGGAGCCATCTTTCCTGCTCGCGTGTGAGA
GACGAAAGAGTGTTTTTCAACGCTACTCGATGTTGTGTGTGATTAGGTTT
TCACGCCGGGGTGAAtataagttaaaattttcacccCGGATTGAAAAAAG
GGTTTTCACCTCGCCTTTCGCTGACGTgtatcaaaaaatgattttcaccC
CGGGATGAATTATTATTccatttcaccccggggtggatttcaccccggct
acgtgtaaccaccGCCCTAGGAAAAATCTTGAGGAAAAATCTTGAAAGGT
TTTCTACCCGGTCAAAAGCTTTATTCTAGAACTTTAAAAACTTGGCTGAT
TTCAAACCTCACGAGACTTCGGGTACCTCTCTGCTATGAAATCTTTGAGC
AAATGTCTGTaaacaaatatatattttccattGTAGGGCCTACTCGGTGA
ATTGTTAAAGAACTGTGACGGAACATTGAAATCGGAGGTGATCCAACTAG
CAGCGCACTACGAACATAGACTTCAACTGGGTACGAAACCGATTTATCAC
CTGGAAGCTTTCGTTGCCAAATTCATGAGCATCTACAAACGCTTCCTGGA
AGAGGGAATGGCTgacatgttttgattttcacaGACTTCAAAACATACTC
CTATATTGGAAACCTCATCTTTGTAAAGTTTCGTACTTGGACGGGTGAAT
AGTCGATTCATGAAAACGATAATAGGTTAATTGCGCTCATATATTCTGTT
CTTTTATGTGGCACAAATGCGAAAGTCGGGTGTTCGCATAATTATTATGA
TTTTTATGTCTATTGTGTCGGCTGAATTGGATGAAAGACAATGATTATGT
GATTATATTCTGCAAGGCGTGAAAATAAGACAATAAACAAACAATTTCAT
CGGTTTTGAAGTTCGAGAGCTCTTTCTCGCTCTAATTGTTTCGTTTCATT
TTTTGTACTACAGTATAGNTGAAGTTCGAGAGCTCTTTCTCGCTCAAATT
GTTTCGTTTCATTTTTTGTACTACAGTATAGTAATCCTTAAATAAAAATA
ACGATGAAGCACAGCAAGTTTTGCAGATCTTCCCTTTCCAACACCAAACA
CATCTTTAGCAATTTTATTACGGCCAAACGTTCAGTTTGAATAAACGAAA
ACAATTTCGAGTTCAATCtgtactaaagtctgtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033740XLOC_033740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053445-exon-scaffold_231-1491911889:328433..328485TCONS_00053445-exon-scaffold_231-1491911889:328433..328485Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1510915933:328433..328485TCONS_00053445-exon-scaffold_231-1510915933:328433..328485Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1575043694:328433..328485TCONS_00053445-exon-scaffold_231-1575043694:328433..328485Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1491911889:328620..328687TCONS_00053445-exon-scaffold_231-1491911889:328620..328687Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1510915933:328620..328687TCONS_00053445-exon-scaffold_231-1510915933:328620..328687Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1575043694:328620..328687TCONS_00053445-exon-scaffold_231-1575043694:328620..328687Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1491911889:336799..336896TCONS_00053445-exon-scaffold_231-1491911889:336799..336896Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1510915933:336799..336896TCONS_00053445-exon-scaffold_231-1510915933:336799..336896Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1575043694:336799..336896TCONS_00053445-exon-scaffold_231-1575043694:336799..336896Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1491911889:337310..337491TCONS_00053445-exon-scaffold_231-1491911889:337310..337491Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1510915933:337310..337491TCONS_00053445-exon-scaffold_231-1510915933:337310..337491Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1575043694:337310..337491TCONS_00053445-exon-scaffold_231-1575043694:337310..337491Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1491911889:338136..338272TCONS_00053445-exon-scaffold_231-1491911889:338136..338272Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1510915933:338136..338272TCONS_00053445-exon-scaffold_231-1510915933:338136..338272Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1575043694:338136..338272TCONS_00053445-exon-scaffold_231-1575043694:338136..338272Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1491911889:338478..338576TCONS_00053445-exon-scaffold_231-1491911889:338478..338576Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1510915933:338478..338576TCONS_00053445-exon-scaffold_231-1510915933:338478..338576Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1575043694:338478..338576TCONS_00053445-exon-scaffold_231-1575043694:338478..338576Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1491911889:338928..338997TCONS_00053445-exon-scaffold_231-1491911889:338928..338997Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1510915933:338928..338997TCONS_00053445-exon-scaffold_231-1510915933:338928..338997Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1575043694:338928..338997TCONS_00053445-exon-scaffold_231-1575043694:338928..338997Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1491911889:341919..342666TCONS_00053445-exon-scaffold_231-1491911889:341919..342666Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1510915933:341919..342666TCONS_00053445-exon-scaffold_231-1510915933:341919..342666Clytia hemisphaericaexon
TCONS_00053445-exon-scaffold_231-1575043694:341919..342666TCONS_00053445-exon-scaffold_231-1575043694:341919..342666Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_231supercontigscaffold_231:328433..342666 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.459512	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5.77085e-08	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00053445 vs. Swiss-Prot (Human)
Match: RFC3 (Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2)

HSP 1 Score: 454.521 bits (1168), Expect = 4.543e-157
Identity = 211/297 (71.04%), Postives = 250/297 (84.18%), Query Frame = 3 
Query:    3 LYGTAVEKLKLEQQTFETPSKKKVEISTIGSNYHIEVNPSDAGIYDRLVIQELIKTTASTHQFDPNSQKSFKVVLLMETDRLTKDAQHALRRTMEKYVTTCRLILCCNSTSKVIPAIRSRCLGIRVAAPSKEEITQCLYTVCKKESLSLPEGLAQRIAQKCKGNLRRALLMCEACRVQQYPFTADQSIQDADWEIFLKQTASSIIEQQTPKRLLEVRTRFYELLTHCIPADVIMKGLLGELLKNCDGTLKSEVIQLAAHYEHRLQLGTKPIYHLEAFVAKFMSIYKRFLEEGMADMF 893
            LYG  VEKL++E QT  TPSKKK+EISTI SNYH+EVNPSDAG  DR+VIQE++KT A + Q + NSQ+ FKVVLL E D+LTKDAQHALRRTMEKY++TCRLILCCNSTSKVIP IRSRCL +RV APS E+I   L TVCKKE L+LP  LA R+A+K   NLR+ALLMCEACRVQQYPFTADQ I + DWE++L++TA++I+ QQTP+RLLEVR R YELLTHCIP ++IMKGLL ELL NCDG LK EV Q+AA+YEHRLQLG+K IYHLEAFVAKFM++YK+F+E+G+  M 
Sbjct:   59 LYGVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
The following BLAST results are available for this feature:
BLAST of TCONS_00053445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFC34.543e-15771.04Replication factor C subunit 3 OS=Homo sapiens GN=... [more]
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