TCONS_00005386 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005386
Unique NameTCONS_00005386
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005386 ID=TCONS_00005386|Name=TCONS_00005386|organism=Clytia hemisphaerica|type=transcript|length=470bp
AGAGGGTTGTGGAGCTCGAACAATAGATATCATCAACAGGGGGGACACAG
acaatttctggaaaagcccaattaatAAATTGGAATaaagcttaaaaaaa
attttgtttctctCTGTACAAAAATTAGTCATCTTTATTTTCATGCATGC
AAAAAAATGAGTCGAGTAAACAAACTATGTACAATGCACACAATCATTTG
gcattttataaaaattatctCACAAAAAGTATTTACCCAAAAGAATTGTC
AGTCTGTAAGAAAGTTGACAACTAGAAAAAGGTATCCAAAGTCGTAtacc
aaataaataaaaaatcgtttttgccaaaaaaaaatcatttcacaaatcta
ttaaaatttgacaaaaacacTGTCATTAAATAAAACTATGCGATTATAAA
AATGACTACATAATTATCAAAAGCACCCAAGGAGGTAAATTCATCTTCAG
ACCAAATGATTTGAAGATCT
Run BLAST on NCBI

transcript from alignment at sc0000052:273746..274215

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005386 ID=TCONS_00005386|Name=TCONS_00005386|organism=Clytia hemisphaerica|type=transcript|length=470bp|location=Sequence derived from alignment at sc0000052:273746..274215 (Clytia hemisphaerica)
AGATCTTCAAATCATTTGGTCTGAAGATGAATTTACCTCCTTGGGTGCTT
TTGATAATTATGTAGTCATTTTTATAATCGCATAGTTTTATTTAATGACA
gtgtttttgtcaaattttaatagatttgtgaaatgatttttttttggcaa
aaacgattttttatttatttggtaTACGACTTTGGATACCTTTTTCTAGT
TGTCAACTTTCTTACAGACTGACAATTCTTTTGGGTAAATACTTTTTGTG
agataatttttataaaatgcCAAATGATTGTGTGCATTGTACATAGTTTG
TTTACTCGACTCATTTTTTTGCATGCATGAAAATAAAGATGACTAATTTT
TGTACAGagagaaacaaaattttttttaagctttATTCCAATTTattaat
tgggcttttccagaaattgtCTGTGTCCCCCCTGTTGATGATATCTATTG
TTCGAGCTCCACAACCCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003060XLOC_003060Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005386-exon-sc0000052-1491911889:273746..274215TCONS_00005386-exon-sc0000052-1491911889:273746..274215Clytia hemisphaericaexon
TCONS_00005386-exon-sc0000052-1510915933:273746..274215TCONS_00005386-exon-sc0000052-1510915933:273746..274215Clytia hemisphaericaexon
TCONS_00005386-exon-sc0000052-1575043694:273746..274215TCONS_00005386-exon-sc0000052-1575043694:273746..274215Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:273746..274215 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.81558	0.795319	0.769535	0.301148	13.1983	8.11179	6.29134	4.74462	2.40546	2.12825	0.275431	1.2674	0.994431	1.7838	0.771856	0.993983	0.204084	0.62754	0	0.604821	1.31425	1.92313	2.80538	1.70033	0.291884	0.520999	2.23664	1.59134	1.35785	1.22972
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005386 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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