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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054037 ID=TCONS_00054037|Name=TCONS_00054037|organism=Clytia hemisphaerica|type=transcript|length=6466bpRun BLAST on NCBI protein sequence of TCONS_00054037-protein >TCONS_00054037-protein ID=TCONS_00054037-protein|Name=TCONS_00054037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=990bp MDLSLSSTTMLNFYTLPMLLRRYLELKLLTLLGSQSMLSFMKMIEPKWLKRun BLAST on NCBI transcript from alignment at scaffold_238:26873..64954- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054037 ID=TCONS_00054037|Name=TCONS_00054037|organism=Clytia hemisphaerica|type=transcript|length=38082bp|location=Sequence derived from alignment at scaffold_238:26873..64954- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_238:26873..64954- >TCONS_00054037 ID=TCONS_00054037|Name=TCONS_00054037|organism=Clytia hemisphaerica|type=CDS|length=35676bp|location=Sequence derived from alignment at scaffold_238:26873..64954- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00054037 vs. Swiss-Prot (Human)
Match: NPAS2 (Neuronal PAS domain-containing protein 2 OS=Homo sapiens GN=NPAS2 PE=1 SV=3) HSP 1 Score: 87.4261 bits (215), Expect = 1.128e-32 Identity = 49/137 (35.77%), Postives = 81/137 (59.12%), Query Frame = 1
Query: 193 SRCKSEKKRRDKLNSFIQSLQAMLAPDATKRLDKLTVLKMTLNYLSLHNDFSINVSGQGAGKNKKTFFIPCDELGQLMFEATNGFILVINDDAKLLYIADVAEKILGIKASNITGKPIHAFIHEDDRTKVAEEIMSS 603
SR KSEKKRRD+ N I+ L +ML P T+++DK TVL+ + +L HN+ S ++ K F+ +E QLM EA +GFI+ + D ++Y++D +LG S++ + + F+ E + ++V +I+SS
Sbjct: 13 SRNKSEKKRRDQFNVLIKELSSML-PGNTRKMDKTTVLEKVIGFLQKHNEVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFIIAVTTDGSIIYVSDSITPLLGHLPSDVMDQNLLNFLPEQEHSEVY-KILSS 147 HSP 2 Score: 73.9442 bits (180), Expect = 1.128e-32 Identity = 51/198 (25.76%), Postives = 98/198 (49.49%), Query Frame = 2
Query: 677 TESTYMDFLGENIDVEKRCITLDFRVKVSDSDRE-SSYRHLSCVGRWQSFKKLEE---SGF-----------LSKVLILFATVKTE----MREIAPPEDAIPSFMTKQGLDLSFIFVDQNCPPVTGYTSYELLGKSLYMFVHVDDLPEIHSAHDNLTKNRCKEVQTFFRFCSKGEEWLLLKVVMQMKSSEGTMQPDFI 1213
T+S ++L + D+E C L + S + +E +Y ++ VG ++S+ + +GF L K + ATV+ ++E+ ++ + F ++ L+ F+F+D PP+ GY +E+LG S Y + H+DDL + H +L + K +RF +KG++W+ L+ + + +P+FI
Sbjct: 152 TDSPSPEYLKSDSDLEFYCHLL----RGSLNPKEFPTYEYIKFVGNFRSYNNVPSPSCNGFDNTLSRPCRVPLGKEVCFIATVRLATPQFLKEMCIVDEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHIDDLELLARCHQHLMQFG-KGKSCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFI 344 The following BLAST results are available for this feature:
BLAST of TCONS_00054037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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