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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054073 ID=TCONS_00054073|Name=TCONS_00054073|organism=Clytia hemisphaerica|type=transcript|length=556bp
CGAtcatgaaaaattgagcaaTCTTGAAGAAatcatgaacgttaaacaaa
gCACTACCGACAACGTTGTCTTACACAGTGTGGATGGTACCTTAACAACA
AAGGGAGAATCTTTGTATCgtgtaatcgatggattagcaGATGAAAAGCT
CTTTGTGAAGGACGTAGATGGAAAAGATGAAGGAAAAAtaatcgaaaaag
aaaaagcagAAACTGGAAATTTGAAGGCAGCAGTCATCTCACACTACGTT
CGAACTCTTGGCATTATCGCAACAACCATCCTTCTCTTGAGTGCGATACT
ACAAGAAGCTTTCAGAATCGCGTCAAGAGTATGGCTGGCTCACTGGAGCT
CTCTACCATTACAGACATCAAAGACAAGTCGAAACCTTTTCCTTCGACTA
TATGCATTACTTGGATTTATTCAAGCCTTTTTCGTTTTGCTGCTCGCTTT
AGTTTTAGCAATAGCTAGTTATAAATCATCCAAAAAGCTGCATTCAGAAC
TCTTAGACACTATTATGCATTGTCCAATGGCGTTCTTCGAGGCCACGCCC
ATCGGG Run BLAST on NCBI protein sequence of TCONS_00054073-protein >TCONS_00054073-protein ID=TCONS_00054073-protein|Name=TCONS_00054073-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
DHEKLSNLEEIMNVKQSTTDNVVLHSVDGTLTTKGESLYRVIDGLADEKL
FVKDVDGKDEGKIIEKEKAETGNLKAAVISHYVRTLGIIATTILLLSAIL
QEAFRIASRVWLAHWSSLPLQTSKTSRNLFLRLYALLGFIQAFFVLLLAL
VLAIASYKSSKKLHSELLDTIMHCPMAFFEATPIG Run BLAST on NCBI transcript from alignment at scaffold_239:77873..78869- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054073 ID=TCONS_00054073|Name=TCONS_00054073|organism=Clytia hemisphaerica|type=transcript|length=997bp|location=Sequence derived from alignment at scaffold_239:77873..78869- (Clytia hemisphaerica)
CGATCATGAAAAATTGAGCAATCTTGAAGAAATCATGAACGTTAAACAAA
GCACTACCGACAACGTTGTCTTACACAGTGTGGATGGTACCTTAACAACA
AAGGGAGAATCTTTGTATCGTGTAATCGATGGATTAGCAGATGAAAAGCT
CTTTGTGAAGGACGTAGATGGAAAAGATGAAGGAAAAATAATCGAAAAAG
AAAAAGCAGAAACTGGAAATGTAAGTTTGATGGTTGATTTTAACATTGAT
TGTGGCATGTTATTGATGCCCCTGGGTCTAGGGTAAAAATATATTCTTGA
TATCCATGACGTAATGTTTTCTACGGAAATACCCCGGTTTTTGCCAGTAG
TGGCAAATTTAAACTAGACAAAAGCTGTATAAAACTTGCCACTATTGGCA
AAAACCGGGGTCTTTCCGTAGAAAACATTACGTCATAAATATCATGAATT
TCTGTTGCTCGACTGGAAGATTGATTCGAACATTCGAAGCAGTAGAGAAC
GCTATAATGTCGACGATTGATTTACTTTACATCCTTTTTGTGAGACTTTG
TTCCTTTTGTTAGCACAAACGTCATATATGTGGGATATAAAATTTTCAAA
GGCAACGTTCCAGAGGTTTTTTCAACCTTAATCAAATTTTTCTATATCCT
CTCATTTCAAGTTGAAGGCAGCAGTCATCTCACACTACGTTCGAACTCTT
GGCATTATCGCAACAACCATCCTTCTCTTGAGTGCGATACTACAAGAAGC
TTTCAGAATCGCGTCAAGAGTATGGCTGGCTCACTGGAGCTCTCTACCAT
TACAGACATCAAAGACAAGTCGAAACCTTTTCCTTCGACTATATGCATTA
CTTGGATTTATTCAAGCCTTTTTCGTTTTGCTGCTCGCTTTAGTTTTAGC
AATAGCTAGTTATAAATCATCCAAAAAGCTGCATTCAGAACTCTTAGACA
CTATTATGCATTGTCCAATGGCGTTCTTCGAGGCCACGCCCATCGGG Coding sequence (CDS) from alignment at scaffold_239:77873..78869- >TCONS_00054073 ID=TCONS_00054073|Name=TCONS_00054073|organism=Clytia hemisphaerica|type=CDS|length=1110bp|location=Sequence derived from alignment at scaffold_239:77873..78869- (Clytia hemisphaerica)
TTGAAGGCAGCAGTCATCTCACACTACGTTCGAACTCTTGGCATTATCGC
AACAACCATCCTTCTCTTGAGTGCGATACTACAAGAAGCTTTCAGAATCG
CGTCAAGAGTATGGCTGGCTCACTGGAGCTCTCTACCATTACAGACATCA
AAGACAAGTCGAAACCTTTTCCTTCGACTATATGCATTACTTGGATTTAT
TCAAGCCTTTTTCGTTTTGCTGCTCGCTTTAGTTTTAGCAATAGCTAGTT
ATAAATCATCCAAAAAGCTGCATTCAGAACTCTTAGACACTATTATGCAT
TGTCCAATGGCGTTCTTCGAGGCCACGCCCATCGGGGATCATGAAAAATT
GAGCAATCTTGAAGAAATCATGAACGTTAAACAAAGCACTACCGACAACG
TTGTCTTACACAGTGTGGATGGTACCTTAACAACAAAGGGAGAATCTTTG
TATCGTGTAATCGATGGATTAGCAGATGAAAAGCTCTTTGTGAAGGACGT
AGATGGAAAAGATGAAGGAAAAATAATCGAAAAAGAAAAAGCAGAAACTG
GAAATTTGAAGGCAGCAGTCATCTCACACTACGTTCGAACTCTTGGCATT
ATCGCAACAACCATCCTTCTCTTGAGTGCGATACTACAAGAAGCTTTCAG
AATCGCGTCAAGAGTATGGCTGGCTCACTGGAGCTCTCTACCATTACAGA
CATCAAAGACAAGTCGAAACCTTTTCCTTCGACTATATGCATTACTTGGA
TTTATTCAAGCCTTTTTCGTTTTGCTGCTCGCTTTAGTTTTAGCAATAGC
TAGTTATAAATCATCCAAAAAGCTGCATTCAGAACTCTTAGACACTATTA
TGCATTGTCCAATGGCGTTCTTCGAGGCCACGCCCATCGGGGATCATGAA
AAATTGAGCAATCTTGAAGAAATCATGAACGTTAAACAAAGCACTACCGA
CAACGTTGTCTTACACAGTGTGGATGGTACCTTAACAACAAAGGGAGAAT
CTTTGTATCGTGTAATCGATGGATTAGCAGATGAAAAGCTCTTTGTGAAG
GACGTAGATGGAAAAGATGAAGGAAAAATAATCGAAAAAGAAAAAGCAGA
AACTGGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054073-exon-scaffold_239-1575043694:78650..78869 | TCONS_00054073-exon-scaffold_239-1575043694:78650..78869 | Clytia hemisphaerica | exon |
| TCONS_00054073-exon-scaffold_239-1575043694:77873..78208 | TCONS_00054073-exon-scaffold_239-1575043694:77873..78208 | Clytia hemisphaerica | exon |
| TCONS_00054073-exon-scaffold_239-1510915933:78650..78869 | TCONS_00054073-exon-scaffold_239-1510915933:78650..78869 | Clytia hemisphaerica | exon |
| TCONS_00054073-exon-scaffold_239-1510915933:77873..78208 | TCONS_00054073-exon-scaffold_239-1510915933:77873..78208 | Clytia hemisphaerica | exon |
| TCONS_00054073-exon-scaffold_239-1491911889:78650..78869 | TCONS_00054073-exon-scaffold_239-1491911889:78650..78869 | Clytia hemisphaerica | exon |
| TCONS_00054073-exon-scaffold_239-1491911889:77873..78208 | TCONS_00054073-exon-scaffold_239-1491911889:77873..78208 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_239 | supercontig | scaffold_239:77873..78869 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011527 | ABC1_TM_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
| GO:0006810 | transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
| GO:0042626 | ATPase activity, coupled to transmembrane movement of substances |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| biological_process |
GO:0006810 |
transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0042626 |
ATPase activity, coupled to transmembrane movement of substances |
| molecular_function |
GO:0005524 |
ATP binding |
Blast
The following BLAST results are available for this feature:
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