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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054144 ID=TCONS_00054144|Name=TCONS_00054144|organism=Clytia hemisphaerica|type=transcript|length=906bp TGGTACagagaacaatgaaaatttaCCCAGACTACTCAATCGGAGCTTAT TAAGAGGTGTCAGCTTTGTCAGTCATGAACTGTTGTTGGCAATTCTTACC ATACTCTTTTTCTATCACAACCAGAACATTAGGGGGAAAAAACATACCTG TAACAGTCGCATCATACCAATTTTCTCACCTTCATGGGACGAGAAAAGAG AAATTCCAAATATCCCTGATCCATATACTGCTGATCAACAGACGACAATT GAtagtaaaacaaaagaaatggtGGTTGAAGTTTTAATAGGTGTAAGGAA GACGAGAGATATTGTTAGCACAATAAAAGAAATGTGTCTCCACAGAGCAT TTGTGGAACAAGATGTTTTGAGAAAACCCTCCCCAAGAGATTGTCTTGAT GATGATGAAGTCGCTCACAAAACGATTTTGGAATACAATCTAAATGCATT TGGACTTGTTGTTTTTGAAACAGCAAGGGATGGTGATTGCTGTTTTCGTA GTATTTTACATCAGCTACATAACGTTTTTCAGTTAGACGACAACAAGGAG CTCGAAAACTATCTCACTGGTCTAAGCTTGGGTCAATCGATTGAAGATGA CATCTCCACGTTGAGGTTAGTAAGTTTTTCGAATCTTATAAATATACTGC TTGATTATCACACAACTCTTTTTCTGACGCATATCGTCTCTTCTGCAATT CTCTTTTAAACAGACTGGACCCAACCATAGTGGGTCATCCCACTAAATTC ATTTTTACatattaaaaataaagattACTTTACACTCTACTTTCAATTTC TGTCCTAATTTTCCTTTGTTGAGAAATAAGTcttattttggtgaatttcA TTCTACGAGATTGAGTCTCGTGATATTTAATAGCAGCTATTTTTTTTACT CGCTTC Run BLAST on NCBI protein sequence of TCONS_00054144-protein >TCONS_00054144-protein ID=TCONS_00054144-protein|Name=TCONS_00054144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
GTENNENLPRLLNRSLLRGVSFVSHELLLAILTILFFYHNQNIRGKKHTC NSRIIPIFSPSWDEKREIPNIPDPYTADQQTTIDSKTKEMVVEVLIGVRK TRDIVSTIKEMCLHRAFVEQDVLRKPSPRDCLDDDEVAHKTILEYNLNAF GLVVFETARDGDCCFRSILHQLHNVFQLDDNKELENYLTGLSLGQSIEDD ISTLRLVSFSNLINILLDYHTTLFLTHIVSSAILF Run BLAST on NCBI transcript from alignment at scaffold_241:40611..49324+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054144 ID=TCONS_00054144|Name=TCONS_00054144|organism=Clytia hemisphaerica|type=transcript|length=8714bp|location=Sequence derived from alignment at scaffold_241:40611..49324+ (Clytia hemisphaerica) TGGTACagagaacaatgaaaatttaCCCAGACTACTCAATCGGAGCTTAT
TAAGAGGTTtgtctgatttttttcatttctgtNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNtttttttgtattttgaccagttatgtcttat
gtgtttcattattgtttcaatgttcactgattagtttgataactaggtag
gtccataaaagtatcgcttgttgctgctatttttgtttttgttcatgAAT
ATGTTTTAATACTGCCAAACAGTTTTCGAAAActgtttaacaaaaaaata
ttttcccaagcTGTAGAATCATGTTGGGGTCTCCtatttttgtaataaaa
tattcTATTCAACAACATTAATTATACCACATGATTTTACCCTAGTCAAA
TATTGAGATAATACAACGTACTAAGATATTTTTCTATTGAAAGGGGTGCT
AAAAGAGAGGTACCCAAATTTTAGAAATGATACTACTTGAGCTAAAAGCA
GCATTCACTCTACTTTGGATAATTGTTAACGACTTAAAAGTAGaatctat
ttatttcaattatggaaaacaatggaaattgaGTGTTTGTAAAAAAGACA
TTATCTCGAAAGTAGAGTGAACACACTATGCTTTAGTGTTTAAAgtgttt
aattttcaaaaattttccctttcTGAGTCAACCAAGGTGGCCTCttaaga
aatgtttttgaactttttctttttgttcgcTTATGTTATGGTATAATTTT
GAACAAGATTATGTCATTTAAAACTCATTATTTCACCGccatatgaaaaa
aaaacaattaaattcaGAGAAAATCAGCCTTACTTTGCCCAGAAAACTCG
TGGAAACTTGTTCATTAATTCCAGTCTGAACCTTGACAATTCTTCAGACT
TGACAATTCTTCAACAactcaaaatttctaaatctttACTCTCACTTCGC
TCCCAATAATTCCACTACATAAATTAACATTGTCACACAAGATGGGAAAT
AGTCCCACTGCACAACTGCTTTATAGGAAAGTATAGAGAGGGGAATGTCT
TGAAATCCTGTAATATTGTCTGATTGGGCTCTTCTCAAAACCTTTTTAGC
TTCTCCAATattctttcttatttttgaccatttacatAAGATTCGAATTG
TATTAAAGGACTTTGATCCAACTGATAAATCAAAAGACGATCTAGATTGT
CATTATGTCAAATAAAACCTTTTGAAAATTGATCAAAAGCTTAAAAAGGT
cagtttttctccaaaaattctgttttttaCCTCATTTCTGCACAGATTTT
TTACTGCTAATTAGCCTGTTTGTCGATTGGAGGGCTGTCCGAACCCTGAG
CTTGCATATGAGACATTTCATCCGTGATTTATGACCAGCTTCAAACCCAA
CTTAGCTATATTTTTTGACCTAATTTTCTACAAATACTCCCCATAACTAA
CCCTATTGAATACTGTTGCAAAGACTCTATGTATTTTACCCTTTTGATGA
CATTGGAGGGCTTTCTGTAGCAGACCCAGGCAATTTTTTAGGCCGAAATG
TCAtagtttaagaaaaaatttaagcACCTCATATCACAAAGACTATGCAT
TTGTCCATAGATAGAGATTTTTTGGGgatcagtggcgttgtggcaggggg
gccaggggggccatgcccccccccctgcgTAGCTTTTTTGAAGGGCAAGA
AGAGCAAGGGGTgctaaaagagatttttttaaacgccccaatcttaaaaa
tcatatttatgtgccttaaattgcgcccagggccaattttaatataataa
taattttaagataatttttttttcgcgcgcttcgctcgcaatacagttaa
ttggtaacttctttgcaatctagctaatttataaatttttatataatata
gcattattaaatgaaaatttaactgcgccccaagaccaatatgctgacaa
caatattgaaatcataaaatatcaatttttttactcgcttcgctcgcata
acacattgtttctttaagtttcttttcactctagcaagtgtcaaatttgt
ctatttttttttagtgatttagggtaacTTGgcagttgatttaaaaaaat
tttctagtcggccccaaccatggtggggcctgtttctccattttccattc
atcaaagataaatctacTCTTCTTCACTAAATATTACCTtctcattatgc
ctaggcatgaatttagtaaaagtttagaaaatggtGGGTGGAGACACCAC
TTCGGAAAATTGGAGGGGGGTGCCATTTAtaagaaattgactttggctCC
TCNtttagtaaaagtttagaaaatggtGGGTGGAGACACCACTTCGGAAA
ATTGGAGGGGGGTGCCATTTAtaagaaattgactttggctCCTCCAGAAA
aattcccacaacgccactgttgGGGATGTAAAATAGGCccactggagaaa
aaaattctggTGTTGCCTTTAAAAAAACATACCATCTTGAAAATGGATGA
CATTTTTGGGTTGGGAATACCCTTTTGCCGAGCCATTTCTGGGCCGAGGG
GGGtgataataatttcaaaatttcgattttagtgaaatattccaCCCATT
AGACAAACTCATCAAGAAATCAAGCACTAAAAGTTTGTTGGGTAACCTCA
ATTTTGTTATGAAGTTGCACTTGCtctaatttttcaactttttggcCTCT
CTTCCAGGGGCCCTatcaaattttcaggaaatttttgGTAACCcactttt
ggtttttctgattCCCACTCCCAGCATAAAGTTCTAATGAATTGAAAAGA
AACAGACCTTCTATTCACTTCCAAAGTTTCTTCCCcacagaaattaaaat
tttttggcacaaaatttcgctcaaacattcaaaattcaatgagTCATATC
TCAAAAACCGCTTGAGATATGACGCTTTTCAGGACAGTCTTTTCTTGcca
aaagggtcaaaatttaagCAAAATCTGAGACATCAAGGTATCGCACCTTG
AGGGAATTTGAAGATTTATTTAAACAATGGCTCTTAATTATTTTAGCAAA
GGAATACAAAACCATTTTCTTAGTAGCAAGACTGAAAAACTAACAATgac
tcttattaaaaaataaattgtacacaaaatggtaaaatatgAAGCTATCT
AATTGTGATTAAAATTGTATGTTAAGGATCTTGATATCAATTTGATAGCT
Tcatattttaccattttttgtacaatttatattttttaataagagtcatt
gttattttttcaaagattgggcttttccagaaaaaatctgttcatggggg
gtggaggatagattatttttttcatgaattacccctggacacgggttata
cccctggacaaacatcaaatcaaccccgtggacacataaatttacccctg
gacattggaatttaccccctggacattgcaactttttggtattttttcaa
taccccagGACAATTCagcctccaccccccatgaacggatttttttctgg
aagagcccattgctgGAAAACTTGTACTTCTTGTGTATTTGTTTCTCTGA
TGACCTGAAAGATATTGATTACTTATTGTAATTTATTGTAAACTAGTTAA
ATGACAATATGGTTGAGAATTTCAAGAAATGCTGGAANNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNCAATAATTCATAATTATTtaata
aataatgttttaataTCGCAATTTCTGGCTtcataaaatatattttgctc
TTGTTCAATACAAAGTACAATACAAATGTCTTCATATCATGAAAGCAGTT
ACATTCAATAAACCagaattttgtcaaagtttAACTACTAACTACATGAA
ATGTTAGTCATAATCAAGATTCTATTCGAATTTCTTGCGAATTACGCAAT
TTACTCAAAATCTGGTCCAAGATATGGTCATAActttttttagctttatt
tctgacccctactactaatgttttttggaatcagcataaaatttctgatN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTACTActaatgtttt
ttggaatcagcataaaatttctgataatttgatATGCCACATGACTATGT
TTTGAGAAAGTTGGTGTTAGGCTATTATTGGTCCGAGGGTGCGCTGGGTA
CCCTGCAGAAATGGCGCCCGGGGGGACCCTGAAAAGGGTCcccggtcaaa
atttttgatttttttgttctttttatataatttggcagcttttgtacata
tgccactaattgtttttttctaagtcCCCTCCCTAGTTAAATGTATAATA
ATGCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNAAAAAAACTCAGTGACCAGTTTTTCCTAtt
ttaatttgacttttttcattaggtaggtccattcagtatAATCGCTaaat
ttaaaatcaataaaataatttcattttctgtcTTGTTTAAttggatgatg
atgatggaacaATGATTTGAAACTGAAAAACTAGGGAAGACACATCTTTT
TTCTCTCGTTTTAGGTGTCAGCTTTGTCAGTCATGAACTGTTGTTGGCAA
TTCTTACCATACTCTTTTTCTATCACAACCAGAACATTAGGGGGAAAAAA
CATACCTGTAACAGTCGCATCATACCAATTTTCTCACCTTCATGGGACGA
GAAAAGAGAAATTCCAAATATCCCTGATCCATATACTGCTGATCAACAGA
CGACAATTGAtagtaaaacaaaagaaatggtGGTTGAAGTTTTAATAGGT
GTAAGGAAGACGAGAGATATTGTTAGCACAATAAAAGAAATGTGTCTCCA
CAGAGCATTTGTGGAACAAGATGTTTTGAGAAAACCCTCCCCAAGAGATT
GTCTTGATGATGATGAAGTCGCTCACAAAACGATTTTGGAATACAATCTA
AATGCATTTGGACTTGTTGTTTTTGAAACAGCAAGGGATGGTGATTGCTG
TTTTCGTAGTATTTTACATCAGCTACATAACGTTTTTCAGTTAGACGACA
ACAAGGAGCTCGAAAACTATCTCACTGGTCTAAGCTTGGGTCAATCGATT
GAAGATGACATCTCCACGTTGAGGTTAGTAAGTTTTTCGAATCTTATAAA
TATACTGCTTGATTATCACACAACTCTTTTTCTGACGCATATCGTCTCTT
CTGCAATTCTCTTTTAAACAGACTGGACCCAACCATAGTGGGTCATCCCA
CTAAATTCATTTTTACatattaaaaataaagattACTTTACACTCTACTT
TCAATTTCTGTCCTAATTTTCCTTTGTTGAGAAATAAGTcttattttggt
gaatttcATTCTACGAGATTGAGTCTCGTGATATTTAATAGCAGCTATTT
TTTTTACTCGCTTC Coding sequence (CDS) from alignment at scaffold_241:40611..49324+ >TCONS_00054144 ID=TCONS_00054144|Name=TCONS_00054144|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at scaffold_241:40611..49324+ (Clytia hemisphaerica) GGTACagagaacaatgaaaatttaCCCAGACTACTCAATCGGAGCTTATT AAGAGGTGTCAGCTTTGTCAGTCATGAACTGTTGTTGGCAATTCTTACCA TACTCTTTTTCTATCACAACCAGAACATTAGGGGGAAAAAACATACCTGT AACAGTCGCATCATACCAATTTTCTCACCTTCATGGGACGAGAAAAGAGA AATTCCAAATATCCCTGATCCATATACTGCTGATCAACAGACGACAATTG AtagtaaaacaaaagaaatggtGGTTGAAGTTTTAATAGGTGTAAGGAAG ACGAGAGATATTGTTAGCACAATAAAAGAAATGTGTCTCCACAGAGCATT TGTGGAACAAGATGTTTTGAGAAAACCCTCCCCAAGAGATTGTCTTGATG ATGATGAAGTCGCTCACAAAACGATTTTGGAATACAATCTAAATGCATTT GGACTTGTTGTTTTTGAAACAGCAAGGGATGGTGATTGCTGTTTTCGTAG TATTTTACATCAGCTACATAACGTTTTTCAGTTAGACGACAACAAGGAGC TCGAAAACTATCTCACTGGTCTAAGCTTGGGTCAATCGATTGAAGATGAC ATCTCCACGTTGAGGTTAGTAAGTTTTTCGAATCTTATAAATATACTGCT TGATTATCACACAACTCTTTTTCTGACGCATATCGTCTCTTCTGCAATTC TCTTTTAAGGTACagagaacaatgaaaatttaCCCAGACTACTCAATCGG AGCTTATTAAGAGGTGTCAGCTTTGTCAGTCATGAACTGTTGTTGGCAAT TCTTACCATACTCTTTTTCTATCACAACCAGAACATTAGGGGGAAAAAAC ATACCTGTAACAGTCGCATCATACCAATTTTCTCACCTTCATGGGACGAG AAAAGAGAAATTCCAAATATCCCTGATCCATATACTGCTGATCAACAGAC GACAATTGAtagtaaaacaaaagaaatggtGGTTGAAGTTTTAATAGGTG TAAGGAAGACGAGAGATATTGTTAGCACAATAAAAGAAATGTGTCTCCAC AGAGCATTTGTGGAACAAGATGTTTTGAGAAAACCCTCCCCAAGAGATTG TCTTGATGATGATGAAGTCGCTCACAAAACGATTTTGGAATACAATCTAA ATGCATTTGGACTTGTTGTTTTTGAAACAGCAAGGGATGGTGATTGCTGT TTTCGTAGTATTTTACATCAGCTACATAACGTTTTTCAGTTAGACGACAA CAAGGAGCTCGAAAACTATCTCACTGGTCTAAGCTTGGGTCAATCGATTG AAGATGACATCTCCACGTTGAGGTTAGTAAGTTTTTCGAATCTTATAAAT ATACTGCTTGATTATCACACAACTCTTTTTCTGACGCATATCGTCTCTTC TGCAATTCTCTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00054144-exon-scaffold_241-1491911889:40611..40666 | TCONS_00054144-exon-scaffold_241-1491911889:40611..40666 | Clytia hemisphaerica | exon |
TCONS_00054144-exon-scaffold_241-1510915933:40611..40666 | TCONS_00054144-exon-scaffold_241-1510915933:40611..40666 | Clytia hemisphaerica | exon |
TCONS_00054144-exon-scaffold_241-1575043694:40611..40666 | TCONS_00054144-exon-scaffold_241-1575043694:40611..40666 | Clytia hemisphaerica | exon |
TCONS_00054144-exon-scaffold_241-1491911889:48475..49324 | TCONS_00054144-exon-scaffold_241-1491911889:48475..49324 | Clytia hemisphaerica | exon |
TCONS_00054144-exon-scaffold_241-1510915933:48475..49324 | TCONS_00054144-exon-scaffold_241-1510915933:48475..49324 | Clytia hemisphaerica | exon |
TCONS_00054144-exon-scaffold_241-1575043694:48475..49324 | TCONS_00054144-exon-scaffold_241-1575043694:48475..49324 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_241 | supercontig | scaffold_241:40611..49324 + |
Blast
The following BLAST results are available for this feature:
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