TCONS_00054145 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054145
Unique NameTCONS_00054145
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054145 ID=TCONS_00054145|Name=TCONS_00054145|organism=Clytia hemisphaerica|type=transcript|length=413bp
TTCAGCAACTTCAAAAAACAAAGTAAACTATTTAAATtgccaaaaaaaga
agaagaatgaAAATGGAACTACTCTGCCCGAGAGGATAGCATTTAAGTTT
GAAACTTGGTAAAAATGGACGATGAAGTTTTACTGGTTCGTACTCAGCCG
AAAAGAGTTCTACAACAAAATGTGGCAAAGAAATATGTTTTGAAGAAGGT
GGACCAGTGGGGATTTGAGAAAACTTGGCTAAACAAAGAAATAGGTTATG
GTgtaaaaacacaaaagaaattCATCAAAGGGGATTTTCTATTAGAATAT
CGAGGTGTTTTGCGTTTAAAGGCTGATATGATTGACATCGAAAGACATTA
TGATGAAATTGGAGCTGGGAGCTTCGTCTTTGACTTCAAACACAATGAAA
TTTCTTATTGGTA
Run BLAST on NCBI

protein sequence of TCONS_00054145-protein

>TCONS_00054145-protein ID=TCONS_00054145-protein|Name=TCONS_00054145-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MDDEVLLVRTQPKRVLQQNVAKKYVLKKVDQWGFEKTWLNKEIGYGVKTQ
KKFIKGDFLLEYRGVLRLKADMIDIERHYDEIGAGSFVFDFKHNEISYW
Run BLAST on NCBI

transcript from alignment at scaffold_241:55494..57238+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054145 ID=TCONS_00054145|Name=TCONS_00054145|organism=Clytia hemisphaerica|type=transcript|length=1745bp|location=Sequence derived from alignment at scaffold_241:55494..57238+ (Clytia hemisphaerica)
TTCAGCAACTTCAAAAAACAAAGTAAACTATTTAAATtgccaaaaaaaga
agaagaatgaAAATGGAACTACTCTGCCCGAGAGGATAGCATTTAAGGTC
AGTTATTTAGTTTCTCAAGGTAACACCCGATCCAATGAAAAAACCTCTGT
TCTTTTGCAGCCCGCTTGTGTAACGAAATTTGTTTATGTGGATGAGCTAC
CATAAGCTTTCATTTAAAACATTGATATTGCAAAAAGGACGAAGAACAAT
TTGAGTCTCCTCTTGTATGAAAACTTCATCAttgtaataaaaaatgtatt
tttcttcaGTTTGAAACTTGGTAAAAATGGACGATGAAGTTTTACTGGTT
CGTACTCAGGTATGTATATATAAGATGTGAGAAATTCTGAATTTCTGTCC
AACAATCTTCCATCAGAGATGGGAAGCATAATGCATTTCGTTCTTATTAC
GACTCGTAAGAACTGCATACATATTGATTTTGGCACCACTGGACagtgaa
aaaaattcgaaatagaGGCCactgaaatatttcaaatatcaaGATAATGG
AGATCATATTTTGTATTATTTGTTGTATAGTTTAGTTAATTTCAATTTCG
ACTTTCTTTTCAAGCCGAAAAGAGTTCTACAACAAAATGTGGCAAAGAAA
TATGTTTTGAAGAAGGTGGACCAGTGGGGATTTGAGAAAACTTGGCTAAA
CAAAGAAATAGGTAAATTATTGTTGTATACCTTCCGTAAAAATTTACGTT
GTTTATTATTATGCCCATCGaaaatttgttatatttttggCAACATTGTA
ATTTGTAATTTGCATGTAACTTAGCATCGTCACATCGAAATCGTTTGAGA
GTTTTAAAGTGTATTCCAAAAGCTTGTGGACActttacttttttaaactt
ttctcgACACCCATTTATGCTGTATTAAAAAGTAAATTTTTAGCAGAATA
TTTTAATTGATTAATTTATTTTTGAAAATTGAAAAATGAAGAGGAGAAAA
ATGAAGATTTTTTCGGCTGGGCCACAAATATCGAATTGATACTTTTTAGA
ATATTTAAACTTCGCTGATTCCAAATCTGTGCTCATATTTTTTCATATCT
TTCTTGGATCAAAGGCTACAGCCCATCAAAGTGGGTCCACTTTGGCCCTT
TTTGACTGTTTTATCCTAGGGAATTTGCTTTTCTAATCTCTTGAAGATTA
GAGTCGCACTTCTTCCAAACAGATTTTATCTTTCTGATCATTTCATCTTC
TGAGTTAAATGGGTTGTTGAGTCTACCTTCATACACTTTTTCTTTTACTC
TACAAAAGTGTATCTTTTGAATTGAATACATGTACATGTACatatatttt
gaaaacttcaGCTTCGAAAAGTCAAAAGTAGCCAAAAATATGAAAGAGTc
agatttttttagaattttttgttttttcgtcGCTCGACGTTTTTAACACA
ACTAGAGCATAGTCCCTCAGTCTTTCTTACAACAAGGTCTCGATGAATTT
TATGGTTTACTTTTTGTTCTATTCAAACAAACTTATGATCATTACCTCGA
TTGCATTTTCACTTATCACATTATAGGTTATGGTgtaaaaacacaaaaga
aattCATCAAAGGGGATTTTCTATTAGAATATCGAGGTGTTTTGCGTTTA
AAGGCTGATATGATTGACATCGAAAGACATTATGATGAAATTGGAGCTGG
GAGCTTCGTCTTTGACTTCAAACACAATGAAATTTCTTATTGGTA

Coding sequence (CDS) from alignment at scaffold_241:55494..57238+

>TCONS_00054145 ID=TCONS_00054145|Name=TCONS_00054145|organism=Clytia hemisphaerica|type=CDS|length=891bp|location=Sequence derived from alignment at scaffold_241:55494..57238+ (Clytia hemisphaerica)
ATGGACGATGAAGTTTTACTGGTTCGTACTCAGCCGAAAAGAGTTCTACA
ACAAAATGTGGCAAAGAAATATGTTTTGAAGAAGGTGGACCAGTGGGGAT
TTGAGAAAACTTGGCTAAACAAAGAAATAGGTTATGGTgtaaaaacacaa
aagaaattCATCAAAGGGGATTTTCTATTAGAATATCGAGGTGTTTTGCG
TTTAAAGGCTGATATGATTGACATCGAAAGACATTATGATGAAATTGGAG
CTGGGAGCTTCGTCTTTGACTTCAAACACAATGAAATTTCTTATTGGATG
GACGATGAAGTTTTACTGGTTCGTACTCAGCCGAAAAGAGTTCTACAACA
AAATGTGGCAAAGAAATATGTTTTGAAGAAGGTGGACCAGTGGGGATTTG
AGAAAACTTGGCTAAACAAAGAAATAGGTTATGGTgtaaaaacacaaaag
aaattCATCAAAGGGGATTTTCTATTAGAATATCGAGGTGTTTTGCGTTT
AAAGGCTGATATGATTGACATCGAAAGACATTATGATGAAATTGGAGCTG
GGAGCTTCGTCTTTGACTTCAAACACAATGAAATTTCTTATTGGATGGAC
GATGAAGTTTTACTGGTTCGTACTCAGCCGAAAAGAGTTCTACAACAAAA
TGTGGCAAAGAAATATGTTTTGAAGAAGGTGGACCAGTGGGGATTTGAGA
AAACTTGGCTAAACAAAGAAATAGGTTATGGTgtaaaaacacaaaagaaa
ttCATCAAAGGGGATTTTCTATTAGAATATCGAGGTGTTTTGCGTTTAAA
GGCTGATATGATTGACATCGAAAGACATTATGATGAAATTGGAGCTGGGA
GCTTCGTCTTTGACTTCAAACACAATGAAATTTCTTATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034164XLOC_034164Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054145-proteinTCONS_00054145-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054145-exon-scaffold_241-1491911889:55494..55590TCONS_00054145-exon-scaffold_241-1491911889:55494..55590Clytia hemisphaericaexon
TCONS_00054145-exon-scaffold_241-1510915933:55494..55590TCONS_00054145-exon-scaffold_241-1510915933:55494..55590Clytia hemisphaericaexon
TCONS_00054145-exon-scaffold_241-1575043694:55494..55590TCONS_00054145-exon-scaffold_241-1575043694:55494..55590Clytia hemisphaericaexon
TCONS_00054145-exon-scaffold_241-1491911889:55803..55852TCONS_00054145-exon-scaffold_241-1491911889:55803..55852Clytia hemisphaericaexon
TCONS_00054145-exon-scaffold_241-1510915933:55803..55852TCONS_00054145-exon-scaffold_241-1510915933:55803..55852Clytia hemisphaericaexon
TCONS_00054145-exon-scaffold_241-1575043694:55803..55852TCONS_00054145-exon-scaffold_241-1575043694:55803..55852Clytia hemisphaericaexon
TCONS_00054145-exon-scaffold_241-1491911889:56108..56204TCONS_00054145-exon-scaffold_241-1491911889:56108..56204Clytia hemisphaericaexon
TCONS_00054145-exon-scaffold_241-1510915933:56108..56204TCONS_00054145-exon-scaffold_241-1510915933:56108..56204Clytia hemisphaericaexon
TCONS_00054145-exon-scaffold_241-1575043694:56108..56204TCONS_00054145-exon-scaffold_241-1575043694:56108..56204Clytia hemisphaericaexon
TCONS_00054145-exon-scaffold_241-1491911889:57070..57238TCONS_00054145-exon-scaffold_241-1491911889:57070..57238Clytia hemisphaericaexon
TCONS_00054145-exon-scaffold_241-1510915933:57070..57238TCONS_00054145-exon-scaffold_241-1510915933:57070..57238Clytia hemisphaericaexon
TCONS_00054145-exon-scaffold_241-1575043694:57070..57238TCONS_00054145-exon-scaffold_241-1575043694:57070..57238Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_241supercontigscaffold_241:55494..57238 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.52167	4.40934	5.11967	2.69704	9.61565	8.71038	15.4277	21.3508	9.96547	14.3406	9.51451	13.4355	8.55902	7.32711	6.71514	11.9753	9.79155	10.1698	1.47897	0.967269	4.03552	6.39725	2.99104	4.16957	2.8008	6.66573	6.91551	4.83545	4.43962	3.73662
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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