|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054157 ID=TCONS_00054157|Name=TCONS_00054157|organism=Clytia hemisphaerica|type=transcript|length=1001bp
GTCAAAAAAAAGACCTGGGCTCGAAGTGGTTTGTCAAAACGCATCATCCA
TCTTTCATCTTATTTAAAGAGAGAGAAAGTCCCTCCAAAAGTGTTAAAGA
GGATCATTTTTCCTGACGTAATGCATTTGAGAGGATTTACGAAAGGATAT
AAATAAGACGGCGAACGTTTTCAATTCAAATCAGACTTAGAAGTAGAGCA
ACACAGTAACATCTAAGAATTGAAAGAACATACAAACATTTTACGACTTA
GAAGACATTTCAAAACCCACCACGACGCCATGTTTAACAGTTGGTCATCC
CTCACGTCAGCGCTCAGCAAGCGAACGGAACAACGAAAGCAACACCAACA
AACCCTCACAAAGAAAGATCGTTCCAAGTCACAATGTGATGCGCGCGACC
GCAAACAAACCATCAAGAGAAAGCCGCGCACATTGTCAAACATCACATCC
CATAGTGCACCTGCAGACTGCAAAGCTGTCCCGTCTCAGACTTCCTATAA
ACAATTAGGGTTCACACCAATCAAATTTCAGCAACAAAAACCTGAGAAAT
CATCAGCCTCAAGATTTTCCATTTTCAACGGTGGACAACGGGCACGGAGT
TTCAGTGGAAGATCAAAAATCGACCAACGAAACACGGACTGTCAAAAATT
GAATGGTCAAGAAATCCTTCATGCTCAAGTGTGGAGACAAGCCTATACCT
TTGCCTGTCGTTAAGAAGTACTAGTGAACATCTCAAATTTCACTTTTAAC
AACTTTCATTCTCGCACAAGATTATATTACATGTTTATGTTATTCTGTAC
CATAGCTTTATTTAAACATGTATTTTTTTCACACCATCTATAAAATCTAC
TAGTTTTTCTTGTCCcggaaattttattcaaaatattccGTAAAATAACC
GGTGATGTAAATAAGATAATGATTTTGAtacaaattttgtaaataatgTC
ATGGGTGATAATTTATTGTAAATATATGAAAACAATCGTCTTAAACAGAC
A Run BLAST on NCBI protein sequence of TCONS_00054157-protein >TCONS_00054157-protein ID=TCONS_00054157-protein|Name=TCONS_00054157-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MFNSWSSLTSALSKRTEQRKQHQQTLTKKDRSKSQCDARDRKQTIKRKPR
TLSNITSHSAPADCKAVPSQTSYKQLGFTPIKFQQQKPEKSSASRFSIFN
GGQRARSFSGRSKIDQRNTDCQKLNGQEILHAQVWRQAYTFACR Run BLAST on NCBI transcript from alignment at scaffold_242:44700..46091+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054157 ID=TCONS_00054157|Name=TCONS_00054157|organism=Clytia hemisphaerica|type=transcript|length=1392bp|location=Sequence derived from alignment at scaffold_242:44700..46091+ (Clytia hemisphaerica)
GTCAAAAAAAAGACCTGGGCTCGAAGTGGTTTGTCAAAACGCATCATCCA
TCTTTCATCTTATTTAAAGAGAGAGAAAGTCCCTCCAAAAGTGTTAAAGA
GGATCATTTTTCCTGACGTAATGCATTTGAGAGGATTTACGAAAGGATAT
AAATAAGACGGCGAACGTTTTCAATTCAAATCAGACTTAGAAGTAGAGCA
ACACAGTAACATCTAAGAATTGAAAGAACATACAAACATTTTACGACTTA
GAAGGTACGTTACCGATTGCAAATGGTTGTTGGAGCTGTGTTTTTTTATT
CTTACAAAGATTTAGTCACTTTTCGCCTCTGCGGTTTCGTGCTTTTAGAG
GACTATGCATTGTATTGTAAATTCCTGGGTTTAAAACCATTGCATGTTTT
ATACATCTTTCACATATACAtataatagaaatcaaatatattttaagatg
aaaaatctgaaaaacagtGAGCAATAAGcaagaggaaaaagaaaaggCAA
ACATGTATTGTAAATTGGATTTGCCTTCAAACTTACTCATTTGACCAGTT
TTTTCGTCGGATTATGATATGGGTGAATGATTATTTGGTTAAATATTTGC
GTTTATAGATTTTTATCATCATAAAttatatttgttttattatagACATT
TCAAAACCCACCACGACGCCATGTTTAACAGTTGGTCATCCCTCACGTCA
GCGCTCAGCAAGCGAACGGAACAACGAAAGCAACACCAACAAACCCTCAC
AAAGAAAGATCGTTCCAAGTCACAATGTGATGCGCGCGACCGCAAACAAA
CCATCAAGAGAAAGCCGCGCACATTGTCAAACATCACATCCCATAGTGCA
CCTGCAGACTGCAAAGCTGTCCCGTCTCAGACTTCCTATAAACAATTAGG
GTTCACACCAATCAAATTTCAGCAACAAAAACCTGAGAAATCATCAGCCT
CAAGATTTTCCATTTTCAACGGTGGACAACGGGCACGGAGTTTCAGTGGA
AGATCAAAAATCGACCAACGAAACACGGACTGTCAAAAATTGAATGGTCA
AGAAATCCTTCATGCTCAAGTGTGGAGACAAGCCTATACCTTTGCCTGTC
GTTAAGAAGTACTAGTGAACATCTCAAATTTCACTTTTAACAACTTTCAT
TCTCGCACAAGATTATATTACATGTTTATGTTATTCTGTACCATAGCTTT
ATTTAAACATGTATTTTTTTCACACCATCTATAAAATCTACTAGTTTTTC
TTGTCCcggaaattttattcaaaatattccGTAAAATAACCGGTGATGTA
AATAAGATAATGATTTTGAtacaaattttgtaaataatgTCATGGGTGAT
AATTTATTGTAAATATATGAAAACAATCGTCTTAAACAGACA Coding sequence (CDS) from alignment at scaffold_242:44700..46091+ >TCONS_00054157 ID=TCONS_00054157|Name=TCONS_00054157|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at scaffold_242:44700..46091+ (Clytia hemisphaerica)
ATGTTTAACAGTTGGTCATCCCTCACGTCAGCGCTCAGCAAGCGAACGGA
ACAACGAAAGCAACACCAACAAACCCTCACAAAGAAAGATCGTTCCAAGT
CACAATGTGATGCGCGCGACCGCAAACAAACCATCAAGAGAAAGCCGCGC
ACATTGTCAAACATCACATCCCATAGTGCACCTGCAGACTGCAAAGCTGT
CCCGTCTCAGACTTCCTATAAACAATTAGGGTTCACACCAATCAAATTTC
AGCAACAAAAACCTGAGAAATCATCAGCCTCAAGATTTTCCATTTTCAAC
GGTGGACAACGGGCACGGAGTTTCAGTGGAAGATCAAAAATCGACCAACG
AAACACGGACTGTCAAAAATTGAATGGTCAAGAAATCCTTCATGCTCAAG
TGTGGAGACAAGCCTATACCTTTGCCTGTCGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054157-exon-scaffold_242-1491911889:44700..44953 | TCONS_00054157-exon-scaffold_242-1491911889:44700..44953 | Clytia hemisphaerica | exon |
| TCONS_00054157-exon-scaffold_242-1510915933:44700..44953 | TCONS_00054157-exon-scaffold_242-1510915933:44700..44953 | Clytia hemisphaerica | exon |
| TCONS_00054157-exon-scaffold_242-1575043694:44700..44953 | TCONS_00054157-exon-scaffold_242-1575043694:44700..44953 | Clytia hemisphaerica | exon |
| TCONS_00054157-exon-scaffold_242-1491911889:45345..46091 | TCONS_00054157-exon-scaffold_242-1491911889:45345..46091 | Clytia hemisphaerica | exon |
| TCONS_00054157-exon-scaffold_242-1510915933:45345..46091 | TCONS_00054157-exon-scaffold_242-1510915933:45345..46091 | Clytia hemisphaerica | exon |
| TCONS_00054157-exon-scaffold_242-1575043694:45345..46091 | TCONS_00054157-exon-scaffold_242-1575043694:45345..46091 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:44700..46091 + |
Blast
The following BLAST results are available for this feature:
|
