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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054330 ID=TCONS_00054330|Name=TCONS_00054330|organism=Clytia hemisphaerica|type=transcript|length=4247bpRun BLAST on NCBI transcript from alignment at scaffold_242:361201..372175- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054330 ID=TCONS_00054330|Name=TCONS_00054330|organism=Clytia hemisphaerica|type=transcript|length=10975bp|location=Sequence derived from alignment at scaffold_242:361201..372175- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00054330 vs. Swiss-Prot (Human)
Match: KCNH1 (Potassium voltage-gated channel subfamily H member 1 OS=Homo sapiens GN=KCNH1 PE=1 SV=1) HSP 1 Score: 434.876 bits (1117), Expect = 1.675e-131 Identity = 238/699 (34.05%), Postives = 397/699 (56.80%), Query Frame = 3
Query: 201 TPQNKFIEKVYEKANEIDATFVLANAALDFYPIIYCSQGFFGDVGWTRNEVTTKDVYLNFMMGKRTDKKCIRTYEKGILNKEFTQVEMILYSKGGTKRWFLVTLLPVKDTEENISIFIVFFNYMSHYHDPIPDSPKRLWKIVTR--GAL--NKPSLEFFRKSIDRKKDAERKKKHDRNNIKTRINNMFIPIYGLTKLQVPRFLIRHSHIMKSIWDSFILICILYTSAMVPFMVAFHMKNDQI--VIFDTIVDFMFLIDIVLTFFTTYVD-NGEIITNTKKIRYKYLKGWFALDCVAALPYSVVNFLLNN-------------------PRSLE---------VLSALKILRLIRLGKVSKKIGRYMQMSAVTLGIWXXXXXXCGHWMACVWYMIAYF--WDEPGK--KHHSWLYILAEVTDQPYNFTTEGKIVDGTGPDLFTLYFSALYYTMSSLTTCGFGNIAPNTAAEKLFGCITMLLGCVLYALIFGQVTNIISQLQKSSNEFTDQIASIHNFNKIYKMPPKVAKRLEDFFIATWAVTKGTDEQEILKPCPRDLQSDLCINIHKTVFENNSAFRHLSDPALRALSRYFWTIRTAPGDKLITTGEEVNTVYFVANGSLEVYSGNDLTGLIGPDDSFGKRLTDDHT-TFSVYDVRACSYGAIHCIMCDSVKEALSLYPEENDKIKYDLQLAFDITRQL 2177
PQN F+E + ++N D FVL NA + +PI+Y + GF G+ R EV K +FM G+ TDK I + N E E+++Y K T WF V + P+++ ++ + +F+ F+ ++ + PI D + W R AL ++ L+ S+ + E KH R ++ + +P Y + P +I H + K+ WD ILI YT+ +VP+ V+F + + + ++ D+IVD +FL+DIVL F TT+V GE+I++ K IR YLK WF +D ++ LPY V+N N P LE + S+LK++RL+RLG+V++K+ Y++ A L + + +F L HWMAC+WY I + +DE K +++SWLY LA PY F G GP ++Y S+LY+TM+SLT+ GFGNIAP+T EK+F M++G +LYA IFG VT I Q+ ++N + + + S+ +F K+Y++P +++R+ D+ ++TW++++G D +++L+ CP+D+++D+C+++++ VF+ + AFR SD LRAL+ F T+ APGD + GE V+++ FV +GSLEV +++ ++G D FG + T S +VRA +Y +H I D++++ L Y + +L L +++ +++
Sbjct: 12 APQNTFLENIVRRSN--DTNFVLGNAQIVDWPIVYSNDGFCKLSGYHRAEVMQKSSTCSFMYGELTDKDTIEKVRQTFENYEMNSFEILMYKKNRTPVWFFVKIAPIRNEQDKVVLFLCTFSDITAFKQPIEDDSCKGWGKFARLTRALTSSRGVLQQLAPSVQK---GENVHKHSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCVFKTTWDWIILILTFYTAILVPYNVSFKTRQNNVAWLVVDSIVDVIFLVDIVLNFHTTFVGPAGEVISDPKLIRMNYLKTWFVIDLLSCLPYDVINAFENVDEVSAFMGDPGKIGFADQIPPPLEGRESQGISSLFSSLKVVRLLRLGRVARKLDHYIEYGAAVLVLLVCVFGLAAHWMACIWYSIGDYEIFDEDTKTIRNNSWLYQLAMDIGTPYQFNGSGSGKWEGGPSKNSVYISSLYFTMTSLTSVGFGNIAPSTDIEKIFAVAIMMIGSLLYATIFGNVTTIFQQMYANTNRYHEMLNSVRDFLKLYQVPKGLSERVMDYIVSTWSMSRGIDTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLILTYNLRKRI 705 The following BLAST results are available for this feature:
BLAST of TCONS_00054330 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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