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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054335 ID=TCONS_00054335|Name=TCONS_00054335|organism=Clytia hemisphaerica|type=transcript|length=2654bp
gcatTCATTCAATGATtgttgtttcaaataaaaatgtttcgaCAAGTGAA
ACAGAAGATAACTACTTTCTTCAGTCCAGGTCAAAGTGAACCCCAACCCC
CAATAGCAAGGAGAGACCGTAAACGCAGAAGAACAGAGGATGAAGATGAA
GACTGTGTTATAACTCACACTGTAAATAAACGCCAGAGAAGAGctaaaaa
aaacgaatcaataaatagaaacaaaaatGAAACGTTACAGACGTCAAGAG
ATGGATGATTCCGAATCAGACCTTGAGAAAGAAGCTGACGATTATGTTCC
ATACGTTCCAATCAAAGAACGTAAGAAACAAATGTTGATTAAACACCGTA
TCATCAGTGAGTtggaaaaacaaaaagacagTGGTCAGGAgagtgaaaat
gaagaagtgttgaaacaaaaagaaaaagaagcacGCCAAGCTATGAGTTT
GTTGGATCAACATCATGAATTCAAAGACGAGGAGGATGAAGTGAAAGAGA
CTGAAATGGAGAAACAGTTACGCGAGGAACAGAAGATTCTTGAAAGTGTG
GCTGAACGTAAAGCCTTGATGGCTGCTGCTGAGCTAGCTAAAGGTATCAC
TTACGAAGAGGCTTTAAAAACTTCTTGGAAACCTCCCAGATATATTTCTG
CGTATTCAGAAGAACGTCATGAGAAAGTTCGTAAGAAATATGGCATCCTT
GCTGAAGGTAATGATTGCCCTCCACCTTTGAAACGTTTTCGTGAAATGAA
ATTTCCTAAAAGTATTTTGAACTGTTTAAAAGCAAAAGGTATTACGAACC
CAACTCCAATCCAAATGCAAGGCATCCCGGTTACCTTGTCTGGTCGTGAT
ATGATCGGAATCGCTTTTACTGGTTCTGGAAAAACTCTTGTGTTCACGTT
ACCAATCGTTATGTTTTGTATTGAACAAGAAAAAGGGTTGCCTTTCCGTA
AAGGTGAAGGCCCGTACGGTTTACTCATCTCGCCGTCCCGAGAGTTGGCC
AAACAAACGGCCGACATTATTAAAGAGTTTGTAGCAGCTTTGGCAAAAGA
TGGCTTACCAGAGTTGAAGGTTCTTTGTTGTATCGGTGGGACTTCCATGA
AAGAACAAGCAGAGACGATCAAGCATGGTGTTCACATTGTAGTGGCCACA
CCAGGACGTTTGATGGACTTGTTGAATAAGAAGATTATGAATCTCGATAT
TTGTCGGTATTTATGTTTGGACGAAGCTGATCGGATGATTGATATGGGTT
TCGAAGATGATGTTCGTGAAATCTTCTCCTATTTCAAAGGACAACGTCAA
ACACTTCTTTTCTCTGCTACTATGcctaagaaaattcaaaattttgctcG
ATCAGCCCTTGTTCAACCGATCACAGTCAATGTAGGTCGAGCTGGTGCAG
CGAGTTTAAATATCATCCAAGAGGTGGAGTACGTACGAATGGACGAAAAG
ATTGTTTATCTTTtagaatgtttacaaaaaacaGGACCCCCTGTTTTGAT
TTTTGCTGAGAAAAAATCTGACGTCGATGATATTCATGAATATTTGCTTC
TCAAAAGCGTAGAAGCTGTGGCGGTTCATGGCGACAAAGATCAAGAGGAT
CGACACCGATCCATCCAACAATATCGTAATCGGGAGAAAGACGTCCTTGT
TGCTACGGATATCGCATCAAAGGGTCTCGATTTCCCAAGTATACAACATG
TTATCAACTATGACATGCCTGAGGACATCGAGAACTATGTGCATCGTATC
GGTCGTACGGGTCGTTCAGGGAAAAAAGGTGTCGCTACaacttttataaa
caaaaattcgGACGAATCAGTTTTGTTAGATTTGAAACATTTATTAATCG
AATCCAAACAGAAATTACCACCTGTTCTGGCAGCTTTGGAATCAGAACAT
CAATACTTGAATGCAGGAGAACAACAAGGATGTTCTTATTGTGGTGGTCT
TGGTCACAGAATCACAGACTGTCCGAAATTACAAGCTGTCCAAAACAAAC
AAGTCGGGAGTATTGGTAAAGCTGACTTTTTGGCCAGTAACTCAGCTGAT
TATTAAACTGTCTGCACTCATTTATTGTATCAGGTCTGTTACTAAAGTAC
GAGAGGAGGAAATTTTAGGCTTTagcatttatttttttcaatttaaagag
TAATGGgctttttccagaaaaaatttgaatatgggggataaaggatataa
aattttttggaaatttacctcccggacattgtgacttttgacccccggac
agcaggtctaaccccccggaaaagcattagttgaccccctggacactcaA
AAtcacccccaaacagagcaagtttgccccggacaaggcaaattttgtag
atttttcactaccccgggacactatatcctccaccccccatgtacgaaca
ttttctggaagagctcaATACAATGAACTGTCGATCAATAATcgaaaaac
tatttgaaaaaaaaataatggagaTTTTGCAAGACCAACACTAATGCGAC
TAATGATAAGACATGTTTATGCCAAGTATCgatattttgttttttgggat
agactttttatatatttttatcgtttttttgtACAGTTTATTATGTTAgg
attgattttctgacttgtaTTTTCGTTGATACGAACCAAGAACTTTGCAA
acta Run BLAST on NCBI protein sequence of TCONS_00054335-protein >TCONS_00054335-protein ID=TCONS_00054335-protein|Name=TCONS_00054335-protein|organism=Clytia hemisphaerica|type=polypeptide|length=609bp
MKRYRRQEMDDSESDLEKEADDYVPYVPIKERKKQMLIKHRIISELEKQK
DSGQESENEEVLKQKEKEARQAMSLLDQHHEFKDEEDEVKETEMEKQLRE
EQKILESVAERKALMAAAELAKGITYEEALKTSWKPPRYISAYSEERHEK
VRKKYGILAEGNDCPPPLKRFREMKFPKSILNCLKAKGITNPTPIQMQGI
PVTLSGRDMIGIAFTGSGKTLVFTLPIVMFCIEQEKGLPFRKGEGPYGLL
ISPSRELAKQTADIIKEFVAALAKDGLPELKVLCCIGGTSMKEQAETIKH
GVHIVVATPGRLMDLLNKKIMNLDICRYLCLDEADRMIDMGFEDDVREIF
SYFKGQRQTLLFSATMPKKIQNFARSALVQPITVNVGRAGAASLNIIQEV
EYVRMDEKIVYLLECLQKTGPPVLIFAEKKSDVDDIHEYLLLKSVEAVAV
HGDKDQEDRHRSIQQYRNREKDVLVATDIASKGLDFPSIQHVINYDMPED
IENYVHRIGRTGRSGKKGVATTFINKNSDESVLLDLKHLLIESKQKLPPV
LAALESEHQYLNAGEQQGCSYCGGLGHRITDCPKLQAVQNKQVGSIGKAD
FLASNSADY Run BLAST on NCBI transcript from alignment at scaffold_242:417068..428631- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054335 ID=TCONS_00054335|Name=TCONS_00054335|organism=Clytia hemisphaerica|type=transcript|length=11564bp|location=Sequence derived from alignment at scaffold_242:417068..428631- (Clytia hemisphaerica)
GCATTCATTCAATGATTGTTGTTTCAAATAAAAATGTTTCGACAAGTGAA
ACAGAAGATAACTACTTTCTTCAGTCCAGGTCAAAGTGAACCCCAACCCC
CAATAGCAAGGAGAGACCGTAAACGCAGAAGAACAGAGGATGAAGATGAA
GACTGTGTTATAACTCACACTGTAAATAAACGCCAGAGAAGAGGTCAGTC
TCCTTTTGGATGGACTATCACTAATTTATCTAATTTGTTTGATTTTGTTC
GTGGAAAAGTTATGAGGCCAACAGTTATTATTGATAAAGAAGATGACGTT
GTTGTGATAGAAACACCTGTTGCTCGGCATTCAGACAGAACTATTTTGAC
ACCTGCTAGCAAGTTACGCTTTTCAACCAGTGCTAGCATTGGTAAGCGAG
CTAGTCTTCAACAGATTTCCAAGGCAACTGTTTTTGACCTGACACAATTT
GACAATGAGGAGGAGAGTGAAAATGATCCTGATGTGTCTTTGACCAGTAT
TCGATATGACCTCACTGGTAATTCTCTCAAGTCCAACCTCAACAAGACTC
CAAGGAAAACATCTCGAAGGAAGCCTTCATCACCATCATCTGTGTTCCTT
CAAGAAAACTTTCGTTTAGAAGAGAAAGAACGATATAAACAATTGTTGTC
ACAATTCACTGATGTTTCATTACCGGAATATTCAGAATCTATTTCACCGA
GAAGATCATCTCAAGAAAGTCCTACACGTTCTACATTTAGTTTCAGCTCA
AATACTGAGACCATCAATTCCAGTCCCTTATTCTATCAAAAGTCACTTCA
AAAACCTGTTGATATTGATTTAACCAAATCTGAACTATCAGCAAGCTTTA
TGAAAAAGGATAGTGATAGAAAGAAATACATTGACTTGACTTATACAGAA
CCTAAAGATTTGGTGGTTATTGATGAACCAGTATTAAGGAATACAAGCAG
TAAATCTTCTACTGAGCCTTCTAAAACAAGTGATATTTCAAACCTTGAAT
GGATTCAGAAATGGAGAGATGTGTTGGACCCAGCAGCATTAGAGCGCAAT
CGTCGTATCGAAGCTGAAGAACGTAAACTTGAAGTACTCAAAAATAAGCA
GTTACAAGAGATTGAAGAGCTCAGCAAGCAAGCTCAAAATGAGTTTCCAG
AGCTTACAAACGAAATGTTGGATAAGGTCAAAAGAGCCCTTGGACCTGGT
CATCAGAAAGAAGTTTTTGTCCAAGGTTTCAATGCGGAAATCACGCGTGG
CGATATTGCCACACTTCGAGATTCAACTTGGCTTAATGATGAAGTGGTCA
ATTTCTATTTTAATTTGTTGAAAGCTCGAAGTGAGAGTGATGGTAATCTT
CCAAAAGTTCATGTTTTTAATACCTTCTTTTACCCTAAAATCATGAAAAC
TGGTCATGCAGGTGTCAAACGATGGACCAGAAAAGTTGATATTTTTGCAG
TTGACGTTATCCTTGTTCCAGTTCACTTGGGAATGCATTGGTGTTTAGCA
GTCATTGATTTTAAGAACAAAGAGATTGTTTATTATGATTCACTGAAGGG
TAATAACCCAAGTTGTATTCAAGGGTTGAAAAAGTATTTAGCTGACGAAT
CGATGGATAAAAAGAAGAAACCTTTCGATTTTGAAGGTTGGAATGAATTG
ATGCCCAAAGATATTCCTGAGCAAATGAATGGATGTGATTGTGGCGTCTT
CATGAGCAAGTATGCAGAATATAAAAGTCGATATGCGAAATTCACTTTTA
CTCAAGAGAATATGCCATATTTTCGAAAGAGAATGATTTACGAGATCCTG
AGTAAAGAGTTACTATAAATTGAAGCACTTTCGATACTTGTTTTAATAAA
ATTTAATTTTTGTCTATTATATCAATCCTTGAAAATATTTTAAATGTGTT
TAGTTTTAAATTTCATGGTAGTTCATTCTGAATTCTCGAATCAAGGTCAA
TAGTTTTACTCATTGGGTTGAATTAATTTGTCTTTATTGAGCTTCCTTTC
TTGTATTTTAAGTCGCTTTATTTTTGTTTAATGTTAACTTTGAAGTAACT
TTTTACGATTAAATGTCTTAGTTGATGCATATAAATTTGACAAAATATTT
TGTNGATTGTAGCACTTTCGATACTTGTTTTAATAAAATTTTTGTCTATT
ATATCAATCCTTGAATTTCGAAAATATTTTAAATGTGTTTAGTTTTGAAT
TTCATGGTAGTTCATTCGGAATTCTCGAATCAAGGTCAATAGTTTTACTC
ATTGGGTTGAATTAATTTGTCTTTCTTGAGCTTCCCTTCTTGTATTTTAA
GTCGCTTTTTTTTGTTTATGTGAACTTTGAAGTAACTTTTTACGATTAAA
TGTCTTAGATGCATATAAAATTGACAAAATATTTTGTATTTAAAGAACGT
TTAGGTTTTTACTTTGTTATCATTTATTTAGTTGTTTTTTACCGTAAACA
TTTTCATTGGTTTTATTAAGAACAAATGACATTATCATTCTATAAGGCAA
AAGATTGTTGGCCTGGACAGACTTATATTGTCTACAACCCATCGTTTCGT
ATCCGACGTGGTTAATCAGATAATAGACATTTTCACAACGTCACAAGCAA
CGCTTACCTTGTTTTGAAAATATTGCTATGGTAACTGATTCCCCGAGGAA
TTCATTTAAGAAGTTCAAAAAGTGGTCACTTTGGTAGTGGTTGCAAATCT
AGGCAGTCGTTACACTCAAAATTATTTATGAAAAAGCCTATATTTTGTGT
CTTCCAGGAAAACCACCAGTCTTTTTAACTGGTAACCTTTTTATGTTGGA
TCTATTGACCATCCATCAGTGATCTAAAAAAGCAATTGAATCTCCATCCA
TGATACTATAAACTGAATTCCATAAGATGCCAGCCTTTGAAGTTCGATTT
AGACTCTTTAGGCAAGAACAAATTTTTTTATTGTTCTACAAGCTCGGCCC
ATTCTGTCTTTTTTTCCAAAAGCGAAAAAATAAAAACACCGAATTTGCAA
GTTAAGCAAATTAAATTAAGGAGGATGGACTTTAGAACATGGTCTTCACG
TAGAACAATAAATTTATCTCGCTTTCTTCTAGAATGGTATTTTTTTCAAA
ACTTATAACATCTCGAGTTTGATTTTATTTACCGAAACGTTTCTTTTGTT
TTTAATTTTCAGCTAAAAAAAACGAATCAATAAATAGAAACAAAAATGAA
ACGTTACAGACGTCAAGAGATGGATGATTCCGAATCAGACCTTGAGAAAG
AAGCTGACGATTATGTTCCATACGTTCCAATCAAAGAACGTAAGAAACAA
ATGTTGATTAAACACCGTATCATCAGTGAGTTGGAAAAACAAAAAGACAG
TGGTCAGGAGAGTGAAAATGAAGAAGTGTTGAAACAAAAAGAAAAAGAAG
CACGCCAAGCTATGAGTTTGTTGGATCAACATCATGAATTCAAAGACGAG
GAGGATGAAGTGAAAGAGACTGAAATGGAGAAACAGTTACGCGAGGAACA
GAAGATTCTTGAAAGTGTGGCTGAACGTAAAGCCTTGATGGCTGCTGCTG
AGCTAGCTAAAGGTATCACTTACGAAGAGGCTTTAAAAACTTCTTGGAAA
CCTCCCAGATATATTTCTGCGTATTCAGAAGAACGTCATGAGAAAGTTCG
TAAGAAATATGGCATCCTTGCTGAAGGTAATGATTGCCCTCCACCTTTGA
AACGTTTTCGTGAAATGAAATTTCCTAAAAGTATTTTGAACTGTTTAAAA
GCAAAAGGTATTACGAACCCAACTCCAATCCAAATGCAAGGCATCCCGGT
TACCTTGTCTGGTCGTGATATGATCGGAATCGCTTTTACTGGTTCTGGAA
AAACTCTTGTGTTCACGTTACCAATCGTTATGTTTTGTATTGAACAAGAA
AAAGGGTTGCCTTTCCGTAAAGGTGAAGGCCCGTACGGTTTACTCATCTC
GCCGTCCCGAGAGTTGGCCAAACAAACGGCCGACATTATTAAAGAGTTTG
TAGCAGCTTTGGCAAAAGATGGCTTACCAGAGTTGAAGGTTCTTTGTTGT
ATCGGTGGGACTTCCATGAAAGAACAAGCAGAGACGATCAAGCATGGTGT
TCACATTGTAGTGGCCACACCAGGACGTTTGATGGACTTGTTGAATAAGA
AGATTATGAATCTCGATATTTGTCGGTAAGAATATGTTTTGCTTTTTCTT
TTTTCAAGTTATCTAACTTTCATCATCAGGTAGGTCCATTCAGCACATTC
TGATAAATAACGAGATTGCTCACGGGAATTTCTAGCCCGTGCGAGCAAAC
CCGCGCCTGTCAATCATTTTTTAGACCTGTCAATCATTTCTAAGTAGTTT
TTCCTTTTTTTTCACTTGTGGTTCTGAAAAAAGTGTTTGTAAGATAACAG
AAAAAGACGAAAGTCGATTTTTATGCATCTTTTTTAGCTGAAAGTTTTGG
AATACTGGATTTTCGAGAGAAGGGAAAGTCATGACTCTTGACTCTTGACT
CTTACCAGCTAACCAACCTGATCCATTTTGAAATACTGTACTTGAGTCGA
CTTGAGTCAAACTGCATTCAGTGCATTGAGGTGACACTACTTAGAAACTT
TTTGTTTCTTAAAATTATAACGGGAATTTTCGAAAACATCAATGAGAGCC
CATAAAACCAGAAAAAGTTTGGCTAATGCTGACAAAATAACAAACTTCAA
CGCACCGTATAGGATTCGAACTCTCAAAAACGATATTTCCAAATTGGCCA
TTTTATCGCCATATCCAGTCGGCCATGTAGGAGTTAACTGATGGTGAACA
ATGATATAAGGGCTACATACACTACANGTCGGCCATGTAGGAGTTAACTG
ATGGTGAACAATGATATAAGGGCTACATACACTACACAATATATTGTCAG
GCAATATATTGATGATATATTGCTGGATGTCGACAATATATTGAAAAGGT
GTCCGCAATATATTGTCAGCTCGATTTGCAATATTCCAACAATAAAGGGG
GATTGTTTACAGAAAGAAAATTCCTTTTTATAATAGAGTACCAGTTGCTT
ACTTCGTACATTACGGTCCGCAAACCATATTGTCGAATATTGTTCGTCAA
TATATTGTGTAGTCTAAGTAGCCTATTACAATAATTTTATTTACCCTGTG
TCAAGGTATTAACTTCTTAAACAAATGATTTAAGATCATTTCCAACATGC
AGGAGCCGATCACTCATCGAGATTTTCAGGGGATTTTCAGAACTCTTTAG
TAGGACTGCAGCAAACGGGCTGTAAACCCTGCTAGTGCCTGTAAAATTAG
AATTTCCATCTGGGGAGTTAGGGCACTCTCCAATCTCCTTAAAGTCTCAA
AAGACTGAGGAGAGGAGCTTTTTCTTCCATACAGTACCCATATACAGCAG
ACAGAATTCACAGAGCGTACACGCGCGGGCGATTATTAAACACGATCGCG
CGGAATGCGGGTCAAAAAATTCCCGTGAGCAATCTCGTTATTTATCAAAA
AGTCATTCAGCATCTAGTTTCAAGTTTTATTGTGAAGAAATTGTCTATGA
TTCGTTATATTCATGACGTAATGTCTTCACATGCGCAAGCACCTGAAATA
GCCAGCGCATTTGCCAGTTAGTGTTATTGTTTAAAATTCAAAAATTAGTG
ACAAACACCCGNTGGGTACTAACTGTAAAAAAAGCTGGTATTATCCAAAA
GCCTTTTTTAATGTAGGAGCTTAATTTGTCTTACTCTCCAGACTTACCAA
ATCAGCTTGAGTCTTAATTTTTTTTTAATTGATATTGTTTTTATTCCAAT
ATTCTTTAATACCATATACTGTAGGATATACTGTTAAATTTCACAATGGT
TTTGAACAAATTTTAAAGATATTTGATTGTTGTCGCCTAACGAAATTCGT
TATATCTTATATTCAATAAATTCAAATATAACATAAATGTTCACAGTCGC
TTGAACTTTTGGAGAGTGAAGGAAGGTTATCTTTGCTCCATGGAGTTCGA
CTGCCCCGGAGGCACAATAGAACTGAACTCAAAAGAGCAAAGACCACCTT
TCTTCTAACCCAAGTTGTTGTGACTGACAAAGGTTCATCTCTTTTTTTCG
GATAAAAGTTCACTGAGTCTTTTATAGAAGCACTTAGTCTCTCTTCCCAT
GCCGCCCATAGCGGTAAAAACAATATGAGTGAATGAGCCGTGCTCAATTT
GTAAAATTCTCGAATTGTATACGCGCTTCTTTTCTTTCTCGTTCGAGTCA
TATGCTTTGGAAATAGTGGAATTCGAGAACTGTTTGGCGATTGGGTTGAA
AACCCTTACGTCAAATAATGCCTTCTGTCCTGGAATCCAAAATCCCCTAG
CAGCGATATCGAGACGAGCGTTGTCTTGAATGTTCGTTGACTTTGTGTCG
AAACTTTCTCCTGACAAGGGGGTCAAAACTGGTTCGACCTTAACGTCGTA
GAAAAAACGCGTGTGACGTCTAGTATAGGCTAACTATAAAGTGGCAAACT
CTGAAAAGTAGTCTGGATTGCGTAATAATTGTCGCAGTTATAACTAAGTT
ATTATTCCCAAAAATTTAGTTCGAAATGTTTTCCAAATCTTTTTGACGTG
TCATTGATTATTGAGTTTTTCTTTTTTGGTACTGTCTCAATTTTCTTTTT
AAAAGGAAAAAGAACAGGTTCTCGCATGAATAGAACTAGTAGCTAAAGTT
ACACCTACTATGTTATATTCCATAGATGTTAATTTATTTATGAGATACCC
AAGAGGTTATCAAACTTTTTCCAATTCTGTAAAATCAGCATGTCTATCTC
CTTTGAATATAGTTTCTTGATCAAGTGAAAGTTTCAATGATAGATAATGA
CAACCTAAACAAAACACACTGACAAGATAAGTGAATTGTGAAAAGGAATC
TTTGATACTTTTTTATCGTCTACTTTGGAATTATAAAATATATACTTCTT
TAAAAATAATTTTTCGCTTTGGACAAAATGACAGAATATGTGATCGAACT
GTTGTATTTGGTGGCATTATTCTTATTACCAGAAATCTCTGCGAAAATCT
TCAACCTTATCAGTACAGAGGGATCTATCAACGGCACTTCTTTTCGTTCA
ATCGAGGGAGCTCCCTATCAGCAATGCTTCAGTTTCTGTCAACACTCACA
AAAATGTTTTTCATTCGAAGTTTTTCGATCACCAACGTTTACCTGTTGTT
ACTTTTACAAAGAAATATACAACAATTCAATGGTATTGGTCAACAAGCCC
AATGTGAATTACTACTCGGTCGATAACGCAAAAGATTGTGCTGGCTTGTA
CCAGAGTGGCAAACGCACCAGTGGTGTGTATGAAGTCTACTTGTTTGGAC
TCTACCGTAAGAAAGTGTTTTGTGATATGCAATTAGCTGGTGGAGGATGG
ATGGTTTTTCAGAAGAGATTTGACGGTAGTGTGGAGTTCTTTAACAAGGA
ATGGGAAGATTATAAGGAAGGATTCGGCGACATTACTGGTGAGCATTGGT
TAGGCAACAGATGGTTGAATCTTCTGACAACATCTGAAAAATACGATTAT
CTGGTGTGGGCAAAAGCGTTCGACGGCGGTGTTCGTATGAAGAAAATGCT
TGGTGTGAGAGTGGAGAACGAGGCTGATGGGTTCATGATCACCTTCGAAA
CTGAAACGTGTGAATTCAGCCCAGATGAGCAGTATGGAAAATTTATGAAT
GGTTCAAAATTTTCAACAGAAGACTGTGCTTTGAAATTTGGACCTTGGTG
GCACGGGTGGTCATATTGTCATGCCGATTGTATGAATGGCAGATACAGTA
CAACCGGCAATCTGTCGGAGTTTGCCAACGGCATCATTTGGCAAAGTTGG
AAAGGATATTATATATCACTGAAAGAAAGTTCAATCATGATCAGACCTCG
TTCATTTAATCCGTGAATAATGACTTTCTGTTTACCATTGGTCATGAGTA
TAAATCTCTTAAGGCGTTAGGTACAGAGAGTTGGAAGGATATTATAAATC
ACGGAAAGAACCTCGTTCGCTCTATTGAGATGTTCATACAGGGGGTTGGA
CGAACCTTTTCAAGTCAAAATGAAATTATTGAAAATGTGTGGATACCCCC
CTAGAAAAGGGCAAAATTTGCAAAAATACCCTTGGAAGAATTCTTTTCAT
ACCTTAAAATGAAGTTGGCTGAACTAAAATCAGTTTTTTCCCCCTATAAA
TTTTAGAATAACTTTTTTAAGTACCCCTTTGGAAAAATGAAAAAAACACC
CCCTGGAAATTTTTTCTCGGATTACCCCCTGGAAATGTTCGTCCAGCCCC
CTGAATGGATATAAAATGGAATGGTCTATTTGTGAATAGAAGAATCATGA
AATGTTCATATGTGCGCTTGTTTATCTTAACCATACTGGTAATGAGTGGA
ACTTTCGCTGTTGGTTTTCATATATTGAATATGTTTTAGAAACAACGATC
TTAAGCCAGTGTGTCCCAAAAAAGCGTTTTATATAAAGTAAAATCCTCAA
AACTTTTTATCTAAACTGGGTTTTTAGAATAACTGAAATAAGATCAAATC
TCTGTGTAATCAATAAAAAGTCCCAAGATGATTGAATAGGTTTTGGAGAT
TGAATTATTAAGTAAACAAGATGTAAAATTTAAAATCGATAATTATTAGG
GTTTAACTTTAAATATTTGTCCGCTTTTTTTCGGGACACAGTATATACCT
TTTCGCGTGATACGGTGTAGATAATGAGGTGATTTATCTTAAAAAAACAT
TGTTATGTACTCTCTTACCTAATAAGCGTCCTACCCCGCTAATCAATTTT
TCGAAAATTTTGGGAAAATATTTTTGAAAGCTCCCTCTTTTGCACTAATC
CTGCTGTATTTGCCTCCTTTTCAAAAATTTTCCTCCCAGGACATTCCACC
CCCCCCCGTTAATTAAGTTTTGAGATTTTCTCTAACCTCCCTGCTTATTC
TAACCCCCCCCCGGCTATTAGGTACCAGAGAGTAATTATTAGGGTTTAAA
ACTTGTGTCCGCTTTTCTTTTTGGGACACGCTTTATATACCTTTTCGGGT
GATAACTGCTTTGAAGCCAATTTAAGGATTTTTATAGGTTTTGGTGTTAA
GCTCAGATTTGGGCAATGGTGGATTAAGGGCCAGCGCTTACCTAGGCCGA
TTAGGTATCTATTGATTGGACAAATAATTTTTTTATTATAATATTTTCAA
ATTCAGTGATGAAATCTGCTTCGCTCCTGCCTCATTGTAAAATAAGTTTC
ATATACTTTATCTGCTTATATATACACCGATAAAAAAACTATCAAAGCGA
AATGTTTCAATAATGATGATATTGCCATGCGAGTTCAACGGGTAGGGGAA
CACTTAGGGAAAATGGGTACCGGGTATGTGTGAGGGGTAATGGTTAATTT
CTTATACCTCAAAGACCCTTCTAAGGGTTACAATTCACAAACCACAAACT
GACTAAAACTGTTAGGAGGGTTCTCTAAAGACCGGTCTGGATACCGAATC
TTTTATATTGAATAACCTAGTCTACACAATAGACAGCTCTAGGCTTTTAA
GCCTCACTCTTGGTCTATAGGCACTGCTATAGGCGGCCACTAGTAGCCCC
CACCGGGAAGTGCTTATTAATATGTTTAAACATAATAGAAATAGTTTCGA
AACTCTCTATTGTATCATTAAAACCTCAGTGCGCATGCGATTTATCCGAA
GAATTTCAATATTCAGACAAGAGCAGTGCTCATATCCCGAAGAGTAGGAG
TTTTACTCTCGAAACGAAGGAAGATATGACGTAGCCTATGAATAACCATT
CTCTTTAAACCCTTTGTGCGCGCTGTTTTTAGCTTTTGATTTAGAAGATG
GTTTTGGTACCATGCCCCTTTAAATCAAGTGGTCAGGAGCTATGGCCTCA
AACTGAGACTCAGTGTTGTTTTGGACGTATATACGCGTCCCTCGTGGTCT
AAGGGTTAATGGTCCTATTACAGGTTCACCTATCGATTCCCTAGACGAAT
TGTTTATTTTATTCCGTTCTTTTATGTACAAATTATTTGTTCTTCTTTGT
TGCAGGTATTTATGCTTGGACGAAGCTGATCGGATGATCNAAATCATTTG
TTTTTCTTTGTTGCAGGTATTTATGTTTGGACGAAGCTGATCGGATGATT
GATATGGGTTTCGAAGATGATGTTCGTGAAATCTTCTCCTATTTCAAAGG
ACAACGTCAAACACTTCTTTTCTCTGCTACTATGCCTAAGAAAATTCAAA
ATTTTGCTCGATCAGCCCTTGTTCAACCGATCACAGTCAATGTAGGTCGA
GCTGGTGCAGCGAGTTTAAATATCATCCAAGAGGTGGAGTACGTACGAAT
GGACGAAAAGATTGTTTATCTTTTAGAATGTTTACAAAAAACAGGACCCC
CTGTTTTGATTTTTGCTGAGAAAAAATCTGACGTCGATGATATTCATGAA
TATTTGCTTCTCAAAAGCGTAGAAGCTGTGGCGGTTCATGGCGACAAAGA
TCAAGAGGATCGACACCGATCCATCCAACAATATCGTAATCGGGAGAAAG
ACGTCCTTGTTGCTACGGATATCGCATCAAAGGGTCTCGATTTCCCAAGT
ATACAACATGTTATCAACTATGACATGCCTGAGGACATCGAGAACTATGT
GCATCGTATCGGTCGTACGGGTCGTTCAGGGAAAAAAGGTGTCGCTACAA
CTTTTATAAACAAAAATTCGGACGAATCAGTTTTGTTAGATTTGAAACAT
TTATTAATCGAATCCAAACAGAAATTACCACCTGTTCTGGCAGCTTTGGA
ATCAGAACATCAATACTTGAATGCAGGAGAACAACAAGGATGTTCTTATT
GTGGTGGTCTTGGTCACAGAATCACAGACTGTCCGAAATTACAAGCTGTC
CAAAACAAACAAGTCGGGAGTATTGGTAAAGCTGACTTTTTGGCCAGTAA
CTCAGCTGATTATTAAACTGTCTGCACTCATTTATTGTATCAGGTCTGTT
ACTAAAGTACGAGAGGAGGAAATTTTAGGCTTTAGCATTTATTTTTTTCA
ATTTAAAGAGTAATGGGCTTTTTCCAGAAAAAATTTGAATATGGGGGATA
AAGGATATAAAATTTTTTGGAAATTTACCTCCCGGACATTGTGACTTTTG
ACCCCCGGACAGCAGGTCTAACCCCCCGGAAAAGCATTAGTTGACCCCCT
GGACACTCAAAATCACCCCCAAACAGAGCAAGTTTGCCCCGGACAAGGCA
AATTTTGTAGATTTTTCACTACCCCGGGACACTATATCCTCCACCCCCCA
TGTACGAACATTTTCTGGAAGAGCTCAATACAATGAACTGTCGATCAATA
ATCGAAAAACTATTTGAAAAAAAAATAATGGAGATTTTGCAAGACCAACA
CTAATGCGACTAATGATAAGACATGTTTATGCCAAGTATCGATATTTTGT
TTTTTGGGATAGACTTTTTATATATTTTTATCGTTTTTTTGTACAGTTTA
TTATGTTAGGATTGATTTTCTGACTTGTATTTTCGTTGATACGAACCAAG
AACTTTGCAAACTA Coding sequence (CDS) from alignment at scaffold_242:417068..428631- >TCONS_00054335 ID=TCONS_00054335|Name=TCONS_00054335|organism=Clytia hemisphaerica|type=CDS|length=3660bp|location=Sequence derived from alignment at scaffold_242:417068..428631- (Clytia hemisphaerica)
GTATTTATGTTTGGACGAAGCTGATCGGATGATTGATATGGGTTTCGAAG
ATGATGTTCGTGAAATCTTCTCCTATTTCAAAGGACAACGTCAAACACTT
CTTTTCTCTGCTACTATGCCTAAGAAAATTCAAAATTTTGCTCGATCAGC
CCTTGTTCAACCGATCACAGTCAATGTAGGTCGAGCTGGTGCAGCGAGTT
TAAATATCATCCAAGAGGTGGAGTACGTACGAATGGACGAAAAGATTGTT
TATCTTTTAGAATGTTTACAAAAAACAGGACCCCCTGTTTTGATTTTTGC
TGAGAAAAAATCTGACGTCGATGATATTCATGAATATTTGCTTCTCAAAA
GCGTAGAAGCTGTGGCGGTTCATGGCGACAAAGATCAAGAGGATCGACAC
CGATCCATCCAACAATATCGTAATCGGGAGAAAGACGTCCTTGTTGCTAC
GGATATCGCATCAAAGGGTCTCGATTTCCCAAGTATACAACATGTTATCA
ACTATGACATGCCTGAGGACATCGAGAACTATGTGCATCGTATCGGTCGT
ACGGGTCGTTCAGGGAAAAAAGGTGTCGCTACAACTTTTATAAACAAAAA
TTCGGACGAATCAGTTTTGTTAGATTTGAAACATTTATTAATCGAATCCA
AACAGAAATTACCACCTGTTCTGGCAGCTTTGGAATCAGAACATCAATAC
TTGAATGCAGGAGAACAACAAGGATGTTCTTATTGTGGTGGTCTTGGTCA
CAGAATCACAGACTGTCCGAAATTACAAGCTGTCCAAAACAAACAAGTCG
GGAGTATTGGTAAAGCTGACTTTTTGGCCAGTAACTCAGCTGATTATTAA
ATGAAACGTTACAGACGTCAAGAGATGGATGATTCCGAATCAGACCTTGA
GAAAGAAGCTGACGATTATGTTCCATACGTTCCAATCAAAGAACGTAAGA
AACAAATGTTGATTAAACACCGTATCATCAGTGAGTTGGAAAAACAAAAA
GACAGTGGTCAGGAGAGTGAAAATGAAGAAGTGTTGAAACAAAAAGAAAA
AGAAGCACGCCAAGCTATGAGTTTGTTGGATCAACATCATGAATTCAAAG
ACGAGGAGGATGAAGTGAAAGAGACTGAAATGGAGAAACAGTTACGCGAG
GAACAGAAGATTCTTGAAAGTGTGGCTGAACGTAAAGCCTTGATGGCTGC
TGCTGAGCTAGCTAAAGGTATCACTTACGAAGAGGCTTTAAAAACTTCTT
GGAAACCTCCCAGATATATTTCTGCGTATTCAGAAGAACGTCATGAGAAA
GTTCGTAAGAAATATGGCATCCTTGCTGAAGGTAATGATTGCCCTCCACC
TTTGAAACGTTTTCGTGAAATGAAATTTCCTAAAAGTATTTTGAACTGTT
TAAAAGCAAAAGGTATTACGAACCCAACTCCAATCCAAATGCAAGGCATC
CCGGTTACCTTGTCTGGTCGTGATATGATCGGAATCGCTTTTACTGGTTC
TGGAAAAACTCTTGTGTTCACGTTACCAATCGTTATGTTTTGTATTGAAC
AAGAAAAAGGGTTGCCTTTCCGTAAAGGTGAAGGCCCGTACGGTTTACTC
ATCTCGCCGTCCCGAGAGTTGGCCAAACAAACGGCCGACATTATTAAAGA
GTTTGTAGCAGCTTTGGCAAAAGATGGCTTACCAGAGTTGAAGGTTCTTT
GTTGTATCGGTGGGACTTCCATGAAAGAACAAGCAGAGACGATCAAGCAT
GGTGTTCACATTGTAGTGGCCACACCAGGACGTTTGATGGACTTGTTGAA
TAAGAAGATTATGAATCTCGATATTTGTCGGTATTTATGTTTGGACGAAG
CTGATCGGATGATTGATATGGGTTTCGAAGATGATGTTCGTGAAATCTTC
TCCTATTTCAAAGGACAACGTCAAACACTTCTTTTCTCTGCTACTATGCC
TAAGAAAATTCAAAATTTTGCTCGATCAGCCCTTGTTCAACCGATCACAG
TCAATGTAGGTCGAGCTGGTGCAGCGAGTTTAAATATCATCCAAGAGGTG
GAGTACGTACGAATGGACGAAAAGATTGTTTATCTTTTAGAATGTTTACA
AAAAACAGGACCCCCTGTTTTGATTTTTGCTGAGAAAAAATCTGACGTCG
ATGATATTCATGAATATTTGCTTCTCAAAAGCGTAGAAGCTGTGGCGGTT
CATGGCGACAAAGATCAAGAGGATCGACACCGATCCATCCAACAATATCG
TAATCGGGAGAAAGACGTCCTTGTTGCTACGGATATCGCATCAAAGGGTC
TCGATTTCCCAAGTATACAACATGTTATCAACTATGACATGCCTGAGGAC
ATCGAGAACTATGTGCATCGTATCGGTCGTACGGGTCGTTCAGGGAAAAA
AGGTGTCGCTACAACTTTTATAAACAAAAATTCGGACGAATCAGTTTTGT
TAGATTTGAAACATTTATTAATCGAATCCAAACAGAAATTACCACCTGTT
CTGGCAGCTTTGGAATCAGAACATCAATACTTGAATGCAGGAGAACAACA
AGGATGTTCTTATTGTGGTGGTCTTGGTCACAGAATCACAGACTGTCCGA
AATTACAAGCTGTCCAAAACAAACAAGTCGGGAGTATTGGTAAAGCTGAC
TTTTTGGCCAGTAACTCAGCTGATTATTAAATGAAACGTTACAGACGTCA
AGAGATGGATGATTCCGAATCAGACCTTGAGAAAGAAGCTGACGATTATG
TTCCATACGTTCCAATCAAAGAACGTAAGAAACAAATGTTGATTAAACAC
CGTATCATCAGTGAGTTGGAAAAACAAAAAGACAGTGGTCAGGAGAGTGA
AAATGAAGAAGTGTTGAAACAAAAAGAAAAAGAAGCACGCCAAGCTATGA
GTTTGTTGGATCAACATCATGAATTCAAAGACGAGGAGGATGAAGTGAAA
GAGACTGAAATGGAGAAACAGTTACGCGAGGAACAGAAGATTCTTGAAAG
TGTGGCTGAACGTAAAGCCTTGATGGCTGCTGCTGAGCTAGCTAAAGGTA
TCACTTACGAAGAGGCTTTAAAAACTTCTTGGAAACCTCCCAGATATATT
TCTGCGTATTCAGAAGAACGTCATGAGAAAGTTCGTAAGAAATATGGCAT
CCTTGCTGAAGGTAATGATTGCCCTCCACCTTTGAAACGTTTTCGTGAAA
TGAAATTTCCTAAAAGTATTTTGAACTGTTTAAAAGCAAAAGGTATTACG
AACCCAACTCCAATCCAAATGCAAGGCATCCCGGTTACCTTGTCTGGTCG
TGATATGATCGGAATCGCTTTTACTGGTTCTGGAAAAACTCTTGTGTTCA
CGTTACCAATCGTTATGTTTTGTATTGAACAAGAAAAAGGGTTGCCTTTC
CGTAAAGGTGAAGGCCCGTACGGTTTACTCATCTCGCCGTCCCGAGAGTT
GGCCAAACAAACGGCCGACATTATTAAAGAGTTTGTAGCAGCTTTGGCAA
AAGATGGCTTACCAGAGTTGAAGGTTCTTTGTTGTATCGGTGGGACTTCC
ATGAAAGAACAAGCAGAGACGATCAAGCATGGTGTTCACATTGTAGTGGC
CACACCAGGACGTTTGATGGACTTGTTGAATAAGAAGATTATGAATCTCG
ATATTTGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054335-exon-scaffold_242-1575043694:428439..428631 | TCONS_00054335-exon-scaffold_242-1575043694:428439..428631 | Clytia hemisphaerica | exon |
| TCONS_00054335-exon-scaffold_242-1575043694:424457..425469 | TCONS_00054335-exon-scaffold_242-1575043694:424457..425469 | Clytia hemisphaerica | exon |
| TCONS_00054335-exon-scaffold_242-1575043694:417068..418515 | TCONS_00054335-exon-scaffold_242-1575043694:417068..418515 | Clytia hemisphaerica | exon |
| TCONS_00054335-exon-scaffold_242-1510915933:428439..428631 | TCONS_00054335-exon-scaffold_242-1510915933:428439..428631 | Clytia hemisphaerica | exon |
| TCONS_00054335-exon-scaffold_242-1510915933:424457..425469 | TCONS_00054335-exon-scaffold_242-1510915933:424457..425469 | Clytia hemisphaerica | exon |
| TCONS_00054335-exon-scaffold_242-1510915933:417068..418515 | TCONS_00054335-exon-scaffold_242-1510915933:417068..418515 | Clytia hemisphaerica | exon |
| TCONS_00054335-exon-scaffold_242-1491911889:428439..428631 | TCONS_00054335-exon-scaffold_242-1491911889:428439..428631 | Clytia hemisphaerica | exon |
| TCONS_00054335-exon-scaffold_242-1491911889:424457..425469 | TCONS_00054335-exon-scaffold_242-1491911889:424457..425469 | Clytia hemisphaerica | exon |
| TCONS_00054335-exon-scaffold_242-1491911889:417068..418515 | TCONS_00054335-exon-scaffold_242-1491911889:417068..418515 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:417068..428631 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00054335 vs. Swiss-Prot (Human)
Match: DDX41 (Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens GN=DDX41 PE=1 SV=2) HSP 1 Score: 786.178 bits (2029), Expect = 0.000e+0 Identity = 396/592 (66.89%), Postives = 484/592 (81.76%), Query Frame = 2
Query: 293 YVPYVPIKERKKQMLIKHRIISEL----EKQKDSGQESENEEVLKQKEKEARQAMSLLDQHHXXXXXXXXXXXXXXXXQLREEQKILESVAERKALMAAAELAKGITYEEALKTSWKPPRYISAYSEERHEKVRKKYGILAEGNDCPPPLKRFREMKFPKSILNCLKAKGITNPTPIQMQGIPVTLSGRDMIGIAFTGSGKTLVFTLPIVMFCIEQEKGLPFRKGEGPYGLLISPSRELAKQTADIIKEFVAALAKDGLPELKVLCCIGGTSMKEQAETIKHGVHIVVATPGRLMDLLNKKIMNLDICRYLCLDEADRMIDMGFEDDVREIFSYFKGQRQTLLFSATMPKKIQNFARSALVQPITVNVGRAGAASLNIIQEVEYVRMDEKIVYLLECLQKTGPPVLIFAEKKSDVDDIHEYLLLKSVEAVAVHGDKDQEDRHRSIQQYRNREKDVLVATDIASKGLDFPSIQHVINYDMPEDIENYVHRIGRTGRSGKKGVATTFINKNSDESVLLDLKHLLIESKQKLPPVLAALE-SEHQYLNAGEQQGCSYCGGLGHRITDCPKLQAVQNKQVGSIGKADFLASNSADY 2053
YVPYVP+++R++ +L K E+Q+DSG E +E + +SLLDQH K++ + KE+ EKQL+EE+KILESVAE +ALM+ E+AKGITY++ +KTSW PPRY+ + SEERHE+VRKKY IL EG+ PPP+K F+EMKFP +IL LK KGI +PTPIQ+QGIP LSGRDMIGIAFTGSGKTLVFTLP++MFC+EQEK LPF K EGPYGL+I PSRELA+QT I++ + L +D P L+ CIGG S+KEQ ETI+HGVH++VATPGRLMDLL KK+++LDICRYL LDEADRMIDMGFE D+R IFSYFKGQRQTLLFSATMPKKIQNFA+SALV+P+T+NVGRAGAASL++IQEVEYV+ + K+VYLLECLQKT PPVLIFAEKK+DVD IHEYLLLK VEAVA+HG KDQE+R ++I+ +R +KDVLVATD+ASKGLDFP+IQHVINYDMPE+IENYVHRIGRTGRSG G+ATTFINK DESVL+DLK LL+E+KQK+PPVL L + L+ G ++GC++CGGLGHRITDCPKL+A+Q KQV +IG+ D+LA +S D+
Sbjct: 33 YVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQQDSGSEPRGDE--DDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHCGDESMLDIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDYLAHSSMDF 622
The following BLAST results are available for this feature:
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