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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054453 ID=TCONS_00054453|Name=TCONS_00054453|organism=Clytia hemisphaerica|type=transcript|length=1512bp
CCGTCAGCGTCAACTGGTGGTGCCTCCTGAGACACTAATTTTCAGCCTCT
TCACTTTCAAATTTGTTCCCCCGGGCCTGTACTCTTACTATTGCAACCTT
TGGTTCCATAAATCTATAGTAATTAAATAGGAAAGAAAGATAGAAAGTAA
ATGGAATATGAtacataaaaagataaaaatgacaaaattttaaaaaacgg
TTTCGTTGGTTTGAAAAGTCTTTTTAGCTTCACTGGATCTGTAGTTAAAA
GCGTTTGTTGATGTTCTCAAGAAATTAGATTCATTTTGTAACATTtcttt
acttttgttttcatgaGTATTATCATCACCATCATCCGCAttgttatttt
caaagaaaacattATCGCTGATGTCAGTATTTGTCATGTAACATGGTGGT
GATGAAGCCTCACTTGGCAATCCATATTTTGATACTGTTGATATAAGTTT
GACTCTTGGAACTTGTTTTTTCTTGAGTATTGAGGACCATGAATTCCTTA
ATCTCATAttacgaaaaataaaaattaaaggaTTGGCAGCTGAGCTAGCG
AAGCCACATATATAGGCTACAACCAGTAAATAGCTTGTTGGTTTTACGAT
TTGTGCTAGGTATAGAATAGCGTAAACAAAGAATGGTGTCCAGCCGATGA
GGAAAGAGCCGAACGTCATATACATTGTTTTTGCAGTTTGTTTTTGTGCA
GTAACTGAAGCTCGACTGTAAAACGAATTGAACTGTAGCCGACGACCATG
TCTACGTAAAGCTCGAAAGATCTGAACATaaattgaaatattgataaGCG
TTGGTACAGCGTAGCAAGCACATACGATAAAACTCGTGTAAAAAGTCTTC
TTTTTGATGAAATATAATCCACAAAGTCCAGTTGACGGATTGAAATAAAC
GTGAGATTCGATGAACGGTACGATGGTTATGATTAGTGATAAAAGGAATG
ATGCAAAGCAGTGAAACAAGGTCTCTTTTTGCGAGAAACGGCGCTTCATT
GGGAGGACTATTGTGACGTATTTATGTAGAGATAGCACAGTGATTGAGTA
AACACACGATGTTAAACAGAATGTAGTTATGAAGGCGTTTAGGTAGCATA
GCTCTGAACCTAAACTCCATTTCTTGGTAATTAGAGTTATGATCGGGAAC
GGGATGATAAATAGCGCGGTAATCAAACTTGTCAGCGAGACGTATGAGAA
ATAGAGATACGTCCTTGATTGGTGACGCAGTGAGCGTCTACTGCATACGG
CAAACAAGAATAAAGAGTTTCCGAAGATAGCCAATAGATCGATAATGATT
AGGATAGCAATCTTGGTGAATCTCCCTTCTGGTGCAACTGGTATGTTAAT
GAAGAGAATTGTAGTATTGAACATCTTTTAgcattctttttgacttttta
ttttacaaaaatctaaaatcaatTAAGAATAATCATACGAAGGGGATCCT
CGTGGAGATGGGGAATTCAGAGATTGAGACAGCAGGGATATTGAATCATT
CCTCCATAAAAC Run BLAST on NCBI protein sequence of TCONS_00054453-protein >TCONS_00054453-protein ID=TCONS_00054453-protein|Name=TCONS_00054453-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp
MFNTTILFINIPVAPEGRFTKIAILIIIDLLAIFGNSLFLFAVCSRRSLR
HQSRTYLYFSYVSLTSLITALFIIPFPIITLITKKWSLGSELCYLNAFIT
TFCLTSCVYSITVLSLHKYVTIVLPMKRRFSQKETLFHCFASFLLSLIIT
IVPFIESHVYFNPSTGLCGLYFIKKKTFYTSFIVCACYAVPTLINISIYV
QIFRALRRHGRRLQFNSFYSRASVTAQKQTAKTMYMTFGSFLIGWTPFFV
YAILYLAQIVKPTSYLLVVAYICGFASSAANPLIFIFRNMRLRNSWSSIL
KKKQVPRVKLISTVSKYGLPSEASSPPCYMTNTDISDNVFFENNNADDGD
DNTHENKSKEMLQNESNFLRTSTNAFNYRSSEAKKTFQTNETVF Run BLAST on NCBI transcript from alignment at scaffold_242:501289..502800 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054453 ID=TCONS_00054453|Name=TCONS_00054453|organism=Clytia hemisphaerica|type=transcript|length=1512bp|location=Sequence derived from alignment at scaffold_242:501289..502800 (Clytia hemisphaerica)
GTTTTATGGAGGAATGATTCAATATCCCTGCTGTCTCAATCTCTGAATTC
CCCATCTCCACGAGGATCCCCTTCGTATGATTATTCTTAattgattttag
atttttgtaaaataaaaagtcaaaaagaatgcTAAAAGATGTTCAATACT
ACAATTCTCTTCATTAACATACCAGTTGCACCAGAAGGGAGATTCACCAA
GATTGCTATCCTAATCATTATCGATCTATTGGCTATCTTCGGAAACTCTT
TATTCTTGTTTGCCGTATGCAGTAGACGCTCACTGCGTCACCAATCAAGG
ACGTATCTCTATTTCTCATACGTCTCGCTGACAAGTTTGATTACCGCGCT
ATTTATCATCCCGTTCCCGATCATAACTCTAATTACCAAGAAATGGAGTT
TAGGTTCAGAGCTATGCTACCTAAACGCCTTCATAACTACATTCTGTTTA
ACATCGTGTGTTTACTCAATCACTGTGCTATCTCTACATAAATACGTCAC
AATAGTCCTCCCAATGAAGCGCCGTTTCTCGCAAAAAGAGACCTTGTTTC
ACTGCTTTGCATCATTCCTTTTATCACTAATCATAACCATCGTACCGTTC
ATCGAATCTCACGTTTATTTCAATCCGTCAACTGGACTTTGTGGATTATA
TTTCATCAAAAAGAAGACTTTTTACACGAGTTTTATCGTATGTGCTTGCT
ACGCTGTACCAACGCttatcaatatttcaatttATGTTCAGATCTTTCGA
GCTTTACGTAGACATGGTCGTCGGCTACAGTTCAATTCGTTTTACAGTCG
AGCTTCAGTTACTGCACAAAAACAAACTGCAAAAACAATGTATATGACGT
TCGGCTCTTTCCTCATCGGCTGGACACCATTCTTTGTTTACGCTATTCTA
TACCTAGCACAAATCGTAAAACCAACAAGCTATTTACTGGTTGTAGCCTA
TATATGTGGCTTCGCTAGCTCAGCTGCCAAtcctttaatttttatttttc
gtaaTATGAGATTAAGGAATTCATGGTCCTCAATACTCAAGAAAAAACAA
GTTCCAAGAGTCAAACTTATATCAACAGTATCAAAATATGGATTGCCAAG
TGAGGCTTCATCACCACCATGTTACATGACAAATACTGACATCAGCGATa
atgttttctttgaaaataacaaTGCGGATGATGGTGATGATAATACtcat
gaaaacaaaagtaaagaAATGTTACAAAATGAATCTAATTTCTTGAGAAC
ATCAACAAACGCTTTTAACTACAGATCCAGTGAAGCTAAAAAGACTTTTC
AAACCAACGAAAccgttttttaaaattttgtcatttttatctttttatgt
aTCATATTCCATTTACTTTCTATCTTTCTTTCCTATTTAATTACTATAGA
TTTATGGAACCAAAGGTTGCAATAGTAAGAGTACAGGCCCGGGGGAACAA
ATTTGAAAGTGAAGAGGCTGAAAATTAGTGTCTCAGGAGGCACCACCAGT
TGACGCTGACGG Coding sequence (CDS) from alignment at scaffold_242:501289..502800 >TCONS_00054453 ID=TCONS_00054453|Name=TCONS_00054453|organism=Clytia hemisphaerica|type=CDS|length=1185bp|location=Sequence derived from alignment at scaffold_242:501289..502800 (Clytia hemisphaerica)
ATGTTCAATACTACAATTCTCTTCATTAACATACCAGTTGCACCAGAAGG
GAGATTCACCAAGATTGCTATCCTAATCATTATCGATCTATTGGCTATCT
TCGGAAACTCTTTATTCTTGTTTGCCGTATGCAGTAGACGCTCACTGCGT
CACCAATCAAGGACGTATCTCTATTTCTCATACGTCTCGCTGACAAGTTT
GATTACCGCGCTATTTATCATCCCGTTCCCGATCATAACTCTAATTACCA
AGAAATGGAGTTTAGGTTCAGAGCTATGCTACCTAAACGCCTTCATAACT
ACATTCTGTTTAACATCGTGTGTTTACTCAATCACTGTGCTATCTCTACA
TAAATACGTCACAATAGTCCTCCCAATGAAGCGCCGTTTCTCGCAAAAAG
AGACCTTGTTTCACTGCTTTGCATCATTCCTTTTATCACTAATCATAACC
ATCGTACCGTTCATCGAATCTCACGTTTATTTCAATCCGTCAACTGGACT
TTGTGGATTATATTTCATCAAAAAGAAGACTTTTTACACGAGTTTTATCG
TATGTGCTTGCTACGCTGTACCAACGCttatcaatatttcaatttATGTT
CAGATCTTTCGAGCTTTACGTAGACATGGTCGTCGGCTACAGTTCAATTC
GTTTTACAGTCGAGCTTCAGTTACTGCACAAAAACAAACTGCAAAAACAA
TGTATATGACGTTCGGCTCTTTCCTCATCGGCTGGACACCATTCTTTGTT
TACGCTATTCTATACCTAGCACAAATCGTAAAACCAACAAGCTATTTACT
GGTTGTAGCCTATATATGTGGCTTCGCTAGCTCAGCTGCCAAtcctttaa
tttttatttttcgtaaTATGAGATTAAGGAATTCATGGTCCTCAATACTC
AAGAAAAAACAAGTTCCAAGAGTCAAACTTATATCAACAGTATCAAAATA
TGGATTGCCAAGTGAGGCTTCATCACCACCATGTTACATGACAAATACTG
ACATCAGCGATaatgttttctttgaaaataacaaTGCGGATGATGGTGAT
GATAATACtcatgaaaacaaaagtaaagaAATGTTACAAAATGAATCTAA
TTTCTTGAGAACATCAACAAACGCTTTTAACTACAGATCCAGTGAAGCTA
AAAAGACTTTTCAAACCAACGAAAccgttttttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054453-exon-scaffold_242-1491911889:501289..502800 | TCONS_00054453-exon-scaffold_242-1491911889:501289..502800 | Clytia hemisphaerica | exon |
| TCONS_00054453-exon-scaffold_242-1510915933:501289..502800 | TCONS_00054453-exon-scaffold_242-1510915933:501289..502800 | Clytia hemisphaerica | exon |
| TCONS_00054453-exon-scaffold_242-1575043694:501289..502800 | TCONS_00054453-exon-scaffold_242-1575043694:501289..502800 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:501289..502800 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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