TCONS_00054214 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054214
Unique NameTCONS_00054214
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1076

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054214 ID=TCONS_00054214|Name=TCONS_00054214|organism=Clytia hemisphaerica|type=transcript|length=1076bp
TTCAGCGTTATGCATGAACAAGAAAAAGATAATTGTATTTTAGCTTTACA
AAATATACCTAAAGGTTGCGAGGTTGGCATTGACTATCACTCATGGTATG
TAGGTGAACGTTTCAAAGGTATCTCCAACATACCCCCTGGCATTCATTTT
GTCTTTGTTCGAGTCACAGACAAATATGGTGAAATGGCGCCTCGTTCTGG
TTTCTTTGTTTACATGAATCCTGGGGAGATTATCTCCAAATCTTTTAAAC
AGGACGATGAAGAATTTGAACATATCCAAGACAATATTCCAATTGATGag
ATGATAGGACTTTTGGCTCAAATGGCACCCTATCCATACAAAGAATGTCA
ACTATGGTCACAACTTACGTTTCACGTGTCTTCACCCTTATTAAAACGTC
TCCAACCGGCATCAAAAAAGGTTTGCTCATACACCGAAGTAGCTATAGAA
AAAGATAAAGTTACAGCAGGGCGTTTAGGTCGAATGTTGATGAAGACAGA
TACACGGACTATTGAGTTAGAATCTAATGATGATGATAATCGAATCAATT
TTACGAAGGTTCCGAAACCTGAATCAATGACTGGACCAGATTTGAGCAAG
AATATCATGGATTCAAGTGTGTGCTTGGAAGCACTGATCAAAGCTATCCC
AGAAGGTGAAGTTGGGCTACTGGGAGAGATACAACTCGCTTACGTGACAT
TCATCCTCGGTCAAGTTTATGATGCATTTGAGCACTGGAAACAATTATTA
TCGCTTATTGGAGGTTGCATGGTCGCACTTACTAAAAGAAGctcttttta
tgaaaagtttatCGATGTGATCGGACTACAGCTTGACGAAATACCTGAAG
ACTTTTTCTTGGAAATCAATCCTCAAAAGAATGTTATCTTCCTGATTTTC
CAGCGTTTTCATTGGGAGTTCAACGATGTTTTGGAAGACGAAATGCCTAC
TATTGTCGAACTGTAATAGTTCATGGTAAGAGattaatttttaattgttt
ttttatacttcaaaacttttgtatatttttttccatATCACTTTTTATTG
CAAGAATCATCAGAAATATTAAAGAA
Run BLAST on NCBI

transcript from alignment at scaffold_242:513853..517385+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054214 ID=TCONS_00054214|Name=TCONS_00054214|organism=Clytia hemisphaerica|type=transcript|length=3533bp|location=Sequence derived from alignment at scaffold_242:513853..517385+ (Clytia hemisphaerica)
TTCAGCGTTATGCATGAACAAGAAAAAGATAATTGTATTTTAGCTTTACA
AAATATACCTAAAGGTTGCGAGGTTGGCATTGACTATCACTCATGGTATG
TAGGTGAACGTTTCAAAGGTATCTCCAACATACCCCCTGGCATTCATTTT
GTCTTTGTTCGAGTCACAGACAAATATGGTGAAATGGCGCCTCGTTCTGG
TTTCTTTGTTTACATGAATCCTGGGGAGATTATCTCCAAATCTTTTAAAC
AGGACGATGAAGAATTTGAACATATCCAAGACAATATTCCAATTGATGGT
ATGAATTTTCACAGTTAATAATTATGTTATTCTTATGAATGATTCCTTGG
GAAACAAGATAATTTTTCACGGTGCTGGAGATTGTATTCacattatttat
tttctttactgCCCTGGTTTTAACTCATCTTTGATCAGATTTTCAGCATA
TAGTGGTAAATGGCATCACTTCTCAATGTTGGTCATTTTGTAATAAGAtg
catttttctttaaaaagatgACCCACATCCAGTAGTGTCAACATTAAGGG
CTACCATGAAAGAGTAAATTGGTAGGCTGGTATTGAAAAACTGCCTCTTT
TAACCCATTTCATGGCATCACTCCGTAATTTGATTCATTTGATTTAAAAT
GTGCGTATATACAGTCCAACtatgaaaaaaatgttaatCTAGACTTTTTA
TTCTAATGGGGCAGCATGCGTTGCGTTGCTCCTACGTCCAGACCTATCAG
TACACCCAAAAAATTGACCGATCCCATATGATGCGAGTGGTACTTAAATT
GTTTATCTAAAGCTCATTGGTCGTTAATTTACCTCTTCTGCATTTTAATT
ATCACATTGTCATTGTGtaaatagaaaacaacatgGTGGGCAAGTCGACT
TTATTAATGGTCACACTTACATGGATAATCTGTAAGCAGTTATTAGCCTA
TAGTGTAAAGGAATATGATATCTGTGTATTAGCCAACATCCTTcatatta
tgtttttttatagagATGATAGGACTTTTGGCTCAAATGGCACCCTATCC
ATACAAAGAATGTCAACTATGGTCACAACTTACGTTTCACGTGTCTTCAC
CCTTATTAAAACGTCTCCAACCGGCATCAAAAAAGGTTTGCTCATACACC
GAAGTAGCTATAGAAAAAGATAAAGTTACAGCAGGGCGTTTAGGTCGAAT
GTTGATGAAGACAGATACACGGACTATTGAGTTAGAATCTAATGATGATG
ATAATCGAATCAATTTTACGAAGGTTCCGAAACCTGAATCAATGACTGGA
CCAGATTTGAGCAAGAATATCATGGATTCAAGTGTGTGCTTGGAAGCACT
GATCAAAGCTATCCCAGAAGGtttgagttgttttttttcatcgtTGGAAA
AGAGAAAGACGTTTTGTGGATCTGAGATCAACGACCTAgaacttttttct
ttcattcaCAGTGAGAACAGAGAACATTTATTATGCTAATTTTCTTTTCA
CGTCTGAAAATGTTAAGTCATTTTATGAAGTTTATGCAGGTTTATGGTGC
AATGCTTGGGATATAAGCTTAGAAAATTACTGCCAGTGAGCAACATCTTT
ACAATattatttcaatcttttttgttCAGGTGAAGTTGGGCTACTGGGAG
AGATACAACTCGCTTACGTGACATTCATCCTCGGTCAAGGTTTGTGATTC
CCCAAGCAATTTTGAGCACTTGTAAATCAGACTGGTCTTTAGACGGTCTA
TCAAGGGCCGGTGAATGACTCGTAATTTACCAAAAGGCAGCTATGAGTCC
AGTCATATAGCTGTTACCAACAAATACTAAAAAACGGCCAGGGACGTTTA
AAATTAGATGTTAAGAAGATGTTAAGGCCGATCTAAAACAAAACTTTGAC
CGCTACAAGACCGCTCTTAGTACTGTAATATTTCTTTGGGAGCCACTTTT
GTGTATATGAATGCAAGTATGAATCATTCCATTAGGGTCATAACTTTCCA
CAATCCAGGGAgcaagagtggcgccctcccctaccttcggttAGAAAGCT
ATCGAAAAAGGAGTCTTCGGGTGGCCTCTGACTGCGgtcacagacttact
tactttctTCTATGCCTCCTTTTATTTATGACTACTTTGAGTCCTAATAA
CTTCAGTTCATTTTTTATATTCTTAGTTTATGATGCATTTGAGCACTGGA
AACAATTATTATCGCTTATTGGAGGTTGCATGGTCGCACTTACTAAAAGA
AGctctttttatgaaaagtttatCGGTATCAGTCAAAttatttgttactt
tttttgTGACACCGCTTTTTTATGTTATGACCAGACCCCTCAAAGCgttt
aacttatttttaaattttggtgattgattcatttcaattttagaCTACAC
GACTtttactacacgttttttttatataaggaacacgtttataaggaact
cgaggctgaaaatggtccaaaaaataaggaattgtttaggaactgctaAG
GAACTGctaaggctgagaataagaaaagcAAGCAAGttaactttgaggct
gaaattctctgtaaaaataaggaactccaggctcagagcaaagtaaaggt
tccttataaaaaaaacgtgtacctgaCAAACGACAGTAAGTTGTTGAAGC
GTAAGCTGTGATTTTTCTGTGTTTCCAGACAAGGGTCCAAACCAAATCAG
CATTTAGTGCAATTCTGAACTCATTGATTGATTgacctttttcatttttc
actctCATAGATGTGATCGGACTACAGCTTGACGAAATACCTGAAGACTT
TTTCTTGGAAATCAATCCTCAAAAGAATGTTATCTTCCTGATTTTCCAGG
tacgaaatatttttaaattagcTTTTAACCCCACTTAATTCTGCTCTCTA
AGTAAAACAAGTAGCACTTTCTTAAACATGAAATAACTAGCCCTGTTTGT
ATTCAGATAGCAGTATTCAACATGCGACATCTTTATGTCACTGTACTTTT
GGAATTGATCAATAATTAAGTGTCTACTCTCATATAAAATATATAGATAC
GGTCAACTTTCTCTAGCTCGAATCTCTATTATTATTTGAATATTAATTCG
attaaactaaaatattggtcccctcagctggaaagtggtttactctctgt
aattcgaatccttCTCCGAATCgaataaagttttttaaaggtcccttgaa
gatcgaattagaggagggacaactgtagaaaatttcaaatctgaTCTATA
ACCTCAGCTTTTATTTTGTTaaggattttttccaaaatctaaaCGAATGT
GACGATTTGACAAATGCCTTATTAAAGAAGTCTTCGATGATGAAAGAACG
TCTCTTTCAGCGTTTTCATTGGGAGTTCAACGATGTTTTGGAAGACGAAA
TGCCTACTATTGTCGAACTGTAATAGTTCATGGTAAGAGattaattttta
attgtttttttatacttcaaaacttttgtatatttttttccatATCACTT
TTTATTGCAAGAATCATCAGAAATATTAAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034196XLOC_034196Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054214-exon-scaffold_242-1491911889:513853..514150TCONS_00054214-exon-scaffold_242-1491911889:513853..514150Clytia hemisphaericaexon
TCONS_00054214-exon-scaffold_242-1510915933:513853..514150TCONS_00054214-exon-scaffold_242-1510915933:513853..514150Clytia hemisphaericaexon
TCONS_00054214-exon-scaffold_242-1575043694:513853..514150TCONS_00054214-exon-scaffold_242-1575043694:513853..514150Clytia hemisphaericaexon
TCONS_00054214-exon-scaffold_242-1491911889:514866..515222TCONS_00054214-exon-scaffold_242-1491911889:514866..515222Clytia hemisphaericaexon
TCONS_00054214-exon-scaffold_242-1510915933:514866..515222TCONS_00054214-exon-scaffold_242-1510915933:514866..515222Clytia hemisphaericaexon
TCONS_00054214-exon-scaffold_242-1575043694:514866..515222TCONS_00054214-exon-scaffold_242-1575043694:514866..515222Clytia hemisphaericaexon
TCONS_00054214-exon-scaffold_242-1491911889:515482..515541TCONS_00054214-exon-scaffold_242-1491911889:515482..515541Clytia hemisphaericaexon
TCONS_00054214-exon-scaffold_242-1510915933:515482..515541TCONS_00054214-exon-scaffold_242-1510915933:515482..515541Clytia hemisphaericaexon
TCONS_00054214-exon-scaffold_242-1575043694:515482..515541TCONS_00054214-exon-scaffold_242-1575043694:515482..515541Clytia hemisphaericaexon
TCONS_00054214-exon-scaffold_242-1491911889:516029..516127TCONS_00054214-exon-scaffold_242-1491911889:516029..516127Clytia hemisphaericaexon
TCONS_00054214-exon-scaffold_242-1510915933:516029..516127TCONS_00054214-exon-scaffold_242-1510915933:516029..516127Clytia hemisphaericaexon
TCONS_00054214-exon-scaffold_242-1575043694:516029..516127TCONS_00054214-exon-scaffold_242-1575043694:516029..516127Clytia hemisphaericaexon
TCONS_00054214-exon-scaffold_242-1491911889:516613..516701TCONS_00054214-exon-scaffold_242-1491911889:516613..516701Clytia hemisphaericaexon
TCONS_00054214-exon-scaffold_242-1510915933:516613..516701TCONS_00054214-exon-scaffold_242-1510915933:516613..516701Clytia hemisphaericaexon
TCONS_00054214-exon-scaffold_242-1575043694:516613..516701TCONS_00054214-exon-scaffold_242-1575043694:516613..516701Clytia hemisphaericaexon
TCONS_00054214-exon-scaffold_242-1491911889:517213..517385TCONS_00054214-exon-scaffold_242-1491911889:517213..517385Clytia hemisphaericaexon
TCONS_00054214-exon-scaffold_242-1510915933:517213..517385TCONS_00054214-exon-scaffold_242-1510915933:517213..517385Clytia hemisphaericaexon
TCONS_00054214-exon-scaffold_242-1575043694:517213..517385TCONS_00054214-exon-scaffold_242-1575043694:517213..517385Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:513853..517385 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.91046	3.53098	0.764628	0.90675	7.50015e-09	1.11517	1.63744	1.66758	3.08285	1.29982	1.32896	2.23022	1.03573	1.91674	1.24451	1.80932	4.69081e-05	1.08285	0.932966	1.47699	2.01871	0	2.96636	0.995707	2.77561	4.16311	2.04867	0	0	0
Blast
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BLAST of TCONS_00054214 vs. Swiss-Prot (Human)
Match: AAR2 (Protein AAR2 homolog OS=Homo sapiens GN=AAR2 PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 4.692e-51
Identity = 115/370 (31.08%), Postives = 186/370 (50.27%), Query Frame = 1 
Query:   28 DNCILALQNIPKGCEVGIDYHSWYVGERFKGISNIPPGIHFVFVRVTDKYG--EMAPRSGFFVYMNPGEIIS---KSFKQD-------DEEFEHIQDNI-PIDEMIGLLAQMAPYPYKECQLWSQLTFHVSSPLLKRLQPASKKVCSYTEV-AIEKDKVTAGRLGRMLMKTDTRTIELESNDDD------------NRINFTKVPK---PESMTGPDLSKNIMDSSVCLEALI-KAIPEGEVGLLGEIQLAYVTFILGQVYDAFEHWKQLLSLIGGCMVALTKRSSFYEKFIDVIGLQLDEIPEDFFLEINPQKNVIFLIFQ----------------------------RFHWEFNDVLEDEMPTIVEL 963
            +   + + N+PKG E GIDY+SW VG +F+G+  IPPGIHF+     DK    E+ PR GFF+ ++   +      + +++       + E E ++ N+  +D+ +G      PYPY   + W  LT  +S   +++LQP ++++C++++V  +   K T  R+G+ L +     IE +S  +               I F+++P    PE  T  +++K+ MD S  LE ++ K  P     +LGE+Q A+V F+LG VY+AFEHWK+LL+L+     A+ K  + Y   I ++  QL EIP DFF++I  Q N +    Q                            +F W+F    ED  P +VEL
Sbjct:   17 EGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLHYSSVDKANPKEVGPRMGFFLSLHQRGLTVLRWSTLREEVDLSPAPESEVEAMRANLQELDQFLG------PYPYATLKKWISLTNFISEATVEKLQPENRQICAFSDVLPVLSMKHTKDRVGQNLPRCG---IECKSYQEGLARLPEMKPRAGTEIRFSELPTQMFPEGATPAEITKHSMDLSYALETVLNKQFPSSPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLLCRSEAAMMKHHTLYINLISILYHQLGEIPADFFVDIVSQDNFLTSTLQVFFSSACSIAVDATLRKKAEKFQAHLTKKFRWDFAAEPEDCAPVVVEL 377
The following BLAST results are available for this feature:
BLAST of TCONS_00054214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AAR24.692e-5131.08Protein AAR2 homolog OS=Homo sapiens GN=AAR2 PE=1 ... [more]
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