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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054232 ID=TCONS_00054232|Name=TCONS_00054232|organism=Clytia hemisphaerica|type=transcript|length=3176bp
tcGTTGAATTTTGAATAGGGATATAATCCAAGTCAATTTCTCAATAgggc
tgaaatttcagagtaTTTTTCTggcggggacgaaatttttaccaaatttt
ccagtggggctggggtccaaGCCGGTCTGTGACACTGGGGTGTAGTCTAG
GAGggtacatatttttttaaatataagcAGCTTCAATTTTCGGGTCAGCT
GTAATTTGTAAAGTAAGTAACATggaaataaaatcacgtgaacttttttg
agTAATCAAATGTTTtaactgcattgatataattttgcaagcCGTTTATT
CAGCAAacatttcttattctatatttTTCGGGtgcttcgaaaaaaaatta
agaaaaactgtggaaaaagaaaagaaataggAAATCGAACCCAGTCCCTA
GGTTTGCTATTTTTATGATTCAGAAAGCGACAagtgcaagtggctctggg
tacgtttcatacattgagtttcaagagcccgaagggctagaggcaaaACT
TCAACCCTTCTTAGGCAAGAGAAATTAAACCCACTTATTTCCCAACCAAA
ACACgctagaacgcgccgtaattaTGAgaacggattgtatctagcgttTC
CTTTGTTTCGGAGGACTACATTtcttgaaatctagcgatagattttagtt
tcaatctggtgtttgtgtaaaaactacgcacgggcgttctggatgggaaa
taagtagtttcattttccatccagaagtctcgcctctagcccttcgggct
tgaatcTCAAtggtttcataaattacgtcaagagcaacgcttacctcatt
tacaaaatattactaatactatggtaattgattcccagaggagttcataa
gaagttCAGTTCATATTTATGAAAGTAACACTTTGAAGACTCAAGTGATA
TAATGGTCTTGGTAATTTGTCAGTCGTTGTACTCAAAACAATTTATCCAA
CCAGGTAATCAAACTTGCAAATGTTTTAATGTATATGACAAGTGTCAAAA
CGTATTAATTTTTTGTCGATCATGTTATACTTATTTGTTGTTGTCAACAC
TATTCCGAGAGTATAGTCATTCTTTTAATTCAAGAAACACAATCGACAGG
AATTGCAAGGTTTTGGATGAACTGCTTCAGATATCAAAAATTATTCTTCC
CTCTTGTGAATTTGGCAAATGATGGTTTGTTTGTCGTTCACTGTTCTTGA
GAAGTTCAAGGATTCGAAATGGAAACATCCAAGACCCTTGAAAGCAAGAA
AGACTTTCTGTTTGAAGTTTCGTTGTGAGAACCGATATGTAACTGTGGAA
AGATATCTTTGCGAGCTTCGCAGACAAATAGATgAATACAAGGATTATGT
ACAAGAAGCTGAAAAAGAAATCGAAACATTAAAGCAGATTGGAAAGCACT
CAGCTGACGGTTCGAAATTAACATATATCTGTGAATCGAGTAGTTTACAC
GACATGGCCATTGTAGTATACATTTTACAAAATGTTTCAATTATATGTAT
cttttttattcagtatattAATGATCTTCTTTTGTGGAAGCGAAAGATCA
GATTTTATCGTTAGATCGATCATCATAGCCTCCTTCACTTCCCCGAACCA
GAGGCtgatttagaaatttaaaaGAGTGGTGTATATCTGCCATTATGTCG
TAACAGCTAATATcatgtctaaggaggcgccagcATGGTTGGTGCCGACG
GGccagaacatttttgaaaatcagaccttctagattggctaaaataGGCC
TCAAACGGTTAGCTCGACAAAATTGTCCCTGGCAATAAATGACCTCATCT
TAGACCTCATCGGAgatttagactggagtcgtttataatgcatgtaatac
agtagtataggcgttgtATGATAATACGTTTactgttacgggatttagtt
tgtataaaccactggaagaatccggtgttctgGCCTTTTTCTTTAATGCC
CTCCAACTTTTTTTGTTCCTATTTTCTATCAAAGATGATTACTTATTTCC
TTCCTCCTGGCAATTGATCTAGTGGTCCTTATGTGATAGGCTAAGATTTT
AAGATTTAGTATGTTGTACTATTTGTTAAAATCACTGAAATAATTAGGTA
CTTTTCTGGCTATCCCTGTCTATATACTGTTGTGTCCAGGGGAGTGATTG
TTTTGAGAGGATTGTGGGTTTTAATAAATGTGATGTTGGTATTGAGGTGT
TACTCTTTTTTTAGAGAGTCTTTGCTCAGGATTGTGGGTAGATTACTAGA
TTAAATACGTTTTCCTTGATCTAAAACTTTCTTAgcagctttttaatttt
ttctttgttataaCTCGCTTGCATACTTTTGATTTAGAGTATTACACGTT
CCAATAAAAACCAGGTAAAAAAACGCTTagtaaaaactttgtaaaaattG
TCGCTGTAtataaaatgatgaaatttctaAACTCAAAAAGATATCTGTAA
CTGGAAggatttttcagcttgaaagcacttaatttttttccatttgacAA
ATATGATACTCAAAATTTAACTCTGGTCGTGTTCGATGGTTTTTGTGTGA
TCAATACATAATCCACAGTTACTGATTATCATCATTGAATGTATTATGCT
AAGATTACAGTAAGACACTCCTGTGCCACGGACTCGCTGGCcagccccag
tggaaaattcaacgaaaatttcgttcccggtgggaaaatgctctgtaatt
tcagccccactgggaaattgactttaactTGATCCTCatttgatattcaa
tgtttaaaaattgtacttcaaaaccatcctcactggaatttttaaccttg
gaacaaatataatttctatccccatttggatttcattaggaatttttatc
caaaCTGAGTAAATaaggggctgtgagacaggggtgtactaaAGTATGAT
TATAAAGATTTTACAGATCTCCATTTTCAAATGCATAGCCAATACATTGA
TTAGTGCGATATCGAATCATCAGCATTATTTCCATTCATCTCAAGATTAC
ATTCTTTAGCTTTTAGTTGTTTCCTTTTCTCTTGATGATATTGGTTAATG
AAATGACCGAGTATAATGACCAAGATTGAAATCACTAATGCTAGCACCAC
AGTCAAAATAAAGGAGATATGCGTAGGTGTAAATGCTGGAGTTGTTTCTT
CAGAATTGTCTTCGGAATCAATTGTC Run BLAST on NCBI protein sequence of TCONS_00054232-protein >TCONS_00054232-protein ID=TCONS_00054232-protein|Name=TCONS_00054232-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MMVCLSFTVLEKFKDSKWKHPRPLKARKTFCLKFRCENRYVTVERYLCEL
RRQIDEYKDYVQEAEKEIETLKQIGKHSADGSKLTYICESSSLHDMAIVV
YILQNVSIICIFFIQYINDLLLWKRKIRFYR Run BLAST on NCBI transcript from alignment at scaffold_242:730349..736270+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054232 ID=TCONS_00054232|Name=TCONS_00054232|organism=Clytia hemisphaerica|type=transcript|length=5922bp|location=Sequence derived from alignment at scaffold_242:730349..736270+ (Clytia hemisphaerica)
tcGTTGAATTTTGAATAGGGATATAATCCAAGTCAATTTCTCAATAgggc
tgaaatttcagagtaTTTTTCTggcggggacgaaatttttaccaaatttt
ccagtggggctggggtccaaGCCGGTCTGTGACACTGGGGTGTAGTCTAG
GAGggtacatatttttttaaatataagcAGCTTCAATTTTCGGGTCAGCT
GTAATTTGTAAAGTAAGTAACATggaaataaaatcacgtgaacttttttg
agTAATCAAATGTTTtaactgcattgatataattttgcaagcCGTTTATT
CAGCAAacatttcttattctatatttTTCGGGtgcttcgaaaaaaaatta
agaaaaactgtggaaaaagaaaagaaataggAAATCGAACCCAGTCCCTA
GGTTTGCTATTTTTATGATTCAGAAAGCGACAagtgcaagtggctctggg
tacgtttcatacattgagtttcaagagcccgaagggctagaggcaaaACT
TCAACCCTTCTTAGGCAAGAGAAATTAAACCCACTTATTTCCCAACCAAA
ACACgctagaacgcgccgtaattaTGAgaacggattgtatctagcgttTC
CTTTGTTTCGGAGGACTACATTtcttgaaatctagcgatagattttagtt
tcaatctggtgtttgtgtaaaaactacgcacgggcgttctggatgggaaa
taagtagtttcattttccatccagaagtctcgcctctagcccttcgggct
tgaatcTCAAtggtttcataaattacgtcaagagcaacgcttacctcatt
tacaaaatattactaatactatggtaattgattcccagaggagttcataa
gaagttCAGTTCATATTTATGAAAGTAACACTTTGAAGACTCAAGTGATA
TAATGGTCTTGGTAATTTGTCAGTCGTTGTACTCAAAACAATTTATCCAA
CCAGGTAATCAAACTTGCAAATGTTTTAATGTATATGACAAGTGTCAAAA
CGTATTAATTTTTTGTCGATCATGTTATACTTATTTGTTGTTGTCAACAC
TATTCCGAGAGTATAGTCATTCTTTTAATTCAAGAAACACAATCGACAGG
AATTGCAAGGTTTTGGATGAACTGCTTCAGATATCAAAAATTGTAAGTTG
ATTTGCTTATTTTTGATACTCATTTGAGCATGGTAGCTTTTCTttaacat
ttcaacttttcaaccTAGGAAATTTCCCCCTGGTAAAAGTAGGTAAAGGT
CCCACTGGGACTCCTTTTCACTataaaaaatgtccaaaaaatcgtcccca
gtggtgaattatactctaatttttggtTCTGCTAAAAATAATCAGATAGA
CAAGTCGTCACTGCAAAAAATATTGTGATATTATTTatctccactgaatt
ttctagctcgaaacaatgaaattaaaatactcagccataaaaaacatggg
aatatcgatccccatggaccttttcgcctttccgtccgccatcttgaatt
gtatgcaaaaatacaggaacgaaaatgccgtggttggatttagttgaaat
gtatgcaaaacatatacaagtttacacaaagattaaaaagacaacaaagt
atcttataaacaaatattataatcattagaacaataaaagatggaatttc
ttaatccaaaaggaaatatttacagaacaacaaaagccttttaggaattt
gttcttaaagacaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagtacacaca
tcaaactttcaaaacacgcaaactgaaagcagtaattatgacgtcacact
ttatcaatgttttgatttgatcatttggcggctctattccgccaagagaa
taatttgccgtcagccgaataaggattgttttttaccttcgcaggtgatt
tttcagtttgagtttctgtctaatgttatggtcttttgaagtgcttgttc
taNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNgcatactttctaagggaatttcaccacg
gcaattcggccaccataatttttgcatacaattcaatatggcggatggaa
aggcgaaaaggtctattgaattttggtccgttattttaacccccactggc
tgaaaaaaaatccaattaggtatgtgagaagggggtgtttagaTCAGTGA
CTTTGTGGCCTTTtgaggtacacgttttttttataagaacatccaaattt
ttgaagccttcgaatgttcatGACTTTCTGAGcacttttttccattttcc
aagACATCGGGTGTTTtggagtccgcaaagccttaaaatgttctcaacct
gttcttaagattttggccaccgaagccttatgctcttctatagtttgttc
ttataatccTCCATAGTGCTTCAAATCAGAAAAATATTTGTCagttttat
tatttcaaaagaaTCTTGTTATTTTTAGATTCTTCCCTCTTGTGAATTTG
GCAAATGATGGTTTGTTTGTCGTTCACTGTTCTTGAGAAGTTCAAGGTAT
ATACAcggttcttttataagaacatccaaaatttttgatgcctttggatg
ttcttaactttttgagtttcaagcctaaaaatgttcttaacatgttctta
gttgcaccattttgtgagtatttttgctaatttccctaaaaaatttggtg
ttttagagcccacaaagccttaaagttttaaaaatcttaacattttggcc
atcttATATAAAAGAACGTGTTTATTGAACATTATTAGACTGCTTTTATG
AAAAATATCAGTCTTCTCTAGAGTTAAAAATATTTAGCTGGAATCTAATT
GCGAATGGcctaaattttaatgaaaacttaACTTGGCGGCTTTTGGTAAA
TCCCTTTCTGCCAGAATTTCTTCCGATTTTGAATAAGGAATTTTGAGAGT
CATTTTATTTCCAGGATTCGAAATGGAAACATCCAAGACCCTTGAAAGCA
AGAAAGACTTTCTGTTTGAAGTTTCGTTGTGAGAACCGATATGTAACTGT
GGAAAGATATCTTTGCGAGCTTCGCAGACAAATAGATGTAAGATATCCTT
TATTCTTCTTATAAATATTTTATTGGGAGCTTTTGAGGCTCAGAAATGCC
GGAAAGTAAGACCAACTTTGAGCATTTAAGGATAATCTGATTTTAccgtc
gttttttataagtttccaaTTTCCCGGAATCTTTCCGCTATCCCCCCCGG
ATAACCGGTATGAGATTGGAAAGGGCTTTTTCTAAAGGTACGGGAAATCT
TGTGTTTACACACGAAAATATCTAACCTTtcgaagctcatttttcaacta
cGCGAAGTCCTGACCTTTTTCCGCTAGTAATGTGACAAAGAAATCTTAAT
GCAGAAAATGGGAAACTTGCAAAAAACGATGGTACCACATGAAAAACCCC
CATTAGTCTATTTATTAAATGTCAGCCTAGAACCATTTTTGGTACGACCT
TGCATGCCGGAGCCAAGTACTCTACCTTTTTGCTATGTTCGAAGCACTAA
CACTAGTGAGGGTAGGTGTAAAGGTGTAAGCAGTAAAGGTGGTAGGGCGT
TGTGTATTCatgtttcatttcaattttaggAATACAAGGATTATGTACAA
GAAGCTGAAAAAGAAATCGAAACATTAAAGCAGATTGGAAAGCACTCAGC
TGACGGTTCGAAATTAACATATATCTGTGAATCGAGTAGTTTACACGACA
TGGCCATTGTAGTATACATTTTACAAAATGTTTCAATTATATGTATcttt
tttattcagtatattAATGATCTTCTTTTGTGGAAGCGAAAGATCAGATT
TTATCGTTAGATCGATCATCATAGCCTCCTTCACTTCCCCGAACCAGAGG
CtgatttagaaatttaaaaGAGTGGTGTATATCTGCCATTATGTCGTAAC
AGCTAATATcatgtctaaggaggcgccagcATGGTTGGTGCCGACGGGcc
agaacatttttgaaaatcagaccttctagattggctaaaataGGCCTCAA
ACGGTTAGCTCGACAAAATTGTCCCTGGCAATAAATGACCTCATCTTAGA
CCTCATCGGAgatttagactggagtcgtttataatgcatgtaatacagta
gtataggcgttgtATGATAATACGTTTactgttacgggatttagtttgta
taaaccactggaagaatccggtgttctgGCCTTTTTCTTTAATGCCCTCC
AACTTTTTTTGTTCCTATTTTCTATCAAAGATGATTACTTATTTCCTTCC
TCCTGGCAATTGATCTAGTGGTCCTTATGTGATAGGCTAAGATTTTAAGA
TTTAGTATGTTGTACTATTTGTTAAAATCACTGAAATAATTAGGTACTTT
TCTGGCTATCCCTGTCTATATACTGTTGTGTCCAGGGGAGTGATTGTTTT
GAGAGGATTGTGGGTTTTAATAAATGTGATGTTGGTATTGAGGTGTTACT
CTTTTTTTAGAGAGTCTTTGCTCAGGATTGTGGGTAGATTACTAGATTAA
ATACGTTTTCCTTGATCTAAAACTTTCTTAgcagctttttaattttttct
ttgttataaCTCGCTTGCATACTTTTGATTTAGAGTATTACACGTTCCAA
TAAAAACCAGGTAAAAAAACGCTTagtaaaaactttgtaaaaattGTCGC
TGTAtataaaatgatgaaatttctaAACTCAAAAAGATATCTGTAACTGG
AAggatttttcagcttgaaagcacttaatttttttccatttgacAAATAT
GATACTCAAAATTTAACTCTGGTCGTGTTCGATGGTTTTTGTGTGATCAA
TACATAATCCACAGTTACTGATTATCATCATTGAATGTATTATGCTAAGA
TTACAGTAAGACACTCCTGTGCCACGGACTCGCTGGCcagccccagtgga
aaattcaacgaaaatttcgttcccggtgggaaaatgctctgtaatttcag
ccccactgggaaattgactttaactTGATCCTCatttgatattcaatgtt
taaaaattgtacttcaaaaccatcctcactggaatttttaaccttggaac
aaatataatttctatccccatttggatttcattaggaatttttatccaaa
CTGAGTAAATaaggggctgtgagacaggggtgtactaaAGTATGATTATA
AAGATTTTACAGATCTCCATTTTCAAATGCATAGCCAATACATTGATTAG
TGCGATATCGAATCATCAGCATTATTTCCATTCATCTCAAGATTACATTC
TTTAGCTTTTAGTTGTTTCCTTTTCTCTTGATGATATTGGTTAATGAAAT
GACCGAGTATAATGACCAAGATTGAAATCACTAATGCTAGCACCACAGTC
AAAATAAAGGAGATATGCGTAGGTGTAAATGCTGGAGTTGTTTCTTCAGA
ATTGTCTTCGGAATCAATTGTC Coding sequence (CDS) from alignment at scaffold_242:730349..736270+ >TCONS_00054232 ID=TCONS_00054232|Name=TCONS_00054232|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_242:730349..736270+ (Clytia hemisphaerica)
ATGATGGTTTGTTTGTCGTTCACTGTTCTTGAGAAGTTCAAGGATTCGAA
ATGGAAACATCCAAGACCCTTGAAAGCAAGAAAGACTTTCTGTTTGAAGT
TTCGTTGTGAGAACCGATATGTAACTGTGGAAAGATATCTTTGCGAGCTT
CGCAGACAAATAGATgAATACAAGGATTATGTACAAGAAGCTGAAAAAGA
AATCGAAACATTAAAGCAGATTGGAAAGCACTCAGCTGACGGTTCGAAAT
TAACATATATCTGTGAATCGAGTAGTTTACACGACATGGCCATTGTAGTA
TACATTTTACAAAATGTTTCAATTATATGTATcttttttattcagtatat
tAATGATCTTCTTTTGTGGAAGCGAAAGATCAGATTTTATCGTTAGATGA
TGGTTTGTTTGTCGTTCACTGTTCTTGAGAAGTTCAAGGATTCGAAATGG
AAACATCCAAGACCCTTGAAAGCAAGAAAGACTTTCTGTTTGAAGTTTCG
TTGTGAGAACCGATATGTAACTGTGGAAAGATATCTTTGCGAGCTTCGCA
GACAAATAGATgAATACAAGGATTATGTACAAGAAGCTGAAAAAGAAATC
GAAACATTAAAGCAGATTGGAAAGCACTCAGCTGACGGTTCGAAATTAAC
ATATATCTGTGAATCGAGTAGTTTACACGACATGGCCATTGTAGTATACA
TTTTACAAAATGTTTCAATTATATGTATcttttttattcagtatattAAT
GATCTTCTTTTGTGGAAGCGAAAGATCAGATTTTATCGTTAGATGATGGT
TTGTTTGTCGTTCACTGTTCTTGAGAAGTTCAAGGATTCGAAATGGAAAC
ATCCAAGACCCTTGAAAGCAAGAAAGACTTTCTGTTTGAAGTTTCGTTGT
GAGAACCGATATGTAACTGTGGAAAGATATCTTTGCGAGCTTCGCAGACA
AATAGATgAATACAAGGATTATGTACAAGAAGCTGAAAAAGAAATCGAAA
CATTAAAGCAGATTGGAAAGCACTCAGCTGACGGTTCGAAATTAACATAT
ATCTGTGAATCGAGTAGTTTACACGACATGGCCATTGTAGTATACATTTT
ACAAAATGTTTCAATTATATGTATcttttttattcagtatattAATGATC
TTCTTTTGTGGAAGCGAAAGATCAGATTTTATCGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054232-exon-scaffold_242-1491911889:730349..731490 | TCONS_00054232-exon-scaffold_242-1491911889:730349..731490 | Clytia hemisphaerica | exon |
| TCONS_00054232-exon-scaffold_242-1510915933:730349..731490 | TCONS_00054232-exon-scaffold_242-1510915933:730349..731490 | Clytia hemisphaerica | exon |
| TCONS_00054232-exon-scaffold_242-1575043694:730349..731490 | TCONS_00054232-exon-scaffold_242-1575043694:730349..731490 | Clytia hemisphaerica | exon |
| TCONS_00054232-exon-scaffold_242-1491911889:733277..733344 | TCONS_00054232-exon-scaffold_242-1491911889:733277..733344 | Clytia hemisphaerica | exon |
| TCONS_00054232-exon-scaffold_242-1510915933:733277..733344 | TCONS_00054232-exon-scaffold_242-1510915933:733277..733344 | Clytia hemisphaerica | exon |
| TCONS_00054232-exon-scaffold_242-1575043694:733277..733344 | TCONS_00054232-exon-scaffold_242-1575043694:733277..733344 | Clytia hemisphaerica | exon |
| TCONS_00054232-exon-scaffold_242-1491911889:733763..733885 | TCONS_00054232-exon-scaffold_242-1491911889:733763..733885 | Clytia hemisphaerica | exon |
| TCONS_00054232-exon-scaffold_242-1510915933:733763..733885 | TCONS_00054232-exon-scaffold_242-1510915933:733763..733885 | Clytia hemisphaerica | exon |
| TCONS_00054232-exon-scaffold_242-1575043694:733763..733885 | TCONS_00054232-exon-scaffold_242-1575043694:733763..733885 | Clytia hemisphaerica | exon |
| TCONS_00054232-exon-scaffold_242-1491911889:734428..736270 | TCONS_00054232-exon-scaffold_242-1491911889:734428..736270 | Clytia hemisphaerica | exon |
| TCONS_00054232-exon-scaffold_242-1510915933:734428..736270 | TCONS_00054232-exon-scaffold_242-1510915933:734428..736270 | Clytia hemisphaerica | exon |
| TCONS_00054232-exon-scaffold_242-1575043694:734428..736270 | TCONS_00054232-exon-scaffold_242-1575043694:734428..736270 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:730349..736270 + |
Blast
The following BLAST results are available for this feature:
|
