TCONS_00054355 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054355
Unique NameTCONS_00054355
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054355 ID=TCONS_00054355|Name=TCONS_00054355|organism=Clytia hemisphaerica|type=transcript|length=2371bp
tttcaacttgatatatttttcaaagatcGCAAAGAGTTTGTTTTTCTATC
ATGGAGaaatcaGCGTTCCTGATCGACAACTCCCACAAAATGGAGGGACA
AAAAGCAAAGGAGAAATTAAAGACAAAATGGAAAGATTTGTATTCAAGTT
GCAGTTTTGATGGTTTTCATTACATCTTTGACGAGCGTGGTTTTCTTCGA
ATCTTTTGGTTATTGATGGTCCTGGGTGCAACAGCTCTCAGCATTGTGCT
TTTCTATGGTGTCATCGAAGAATATTATAACTTTAAATCTCACACAAGTA
TTGAAGAAGTATTAAGCAATGATAAGGTTGAATTTCCAACTGTAACTATT
TGTAATATAAACGCTGTCTCTAagaggaaaattgaaaaagcagGGTACAA
TTCAAGTGTAGAGGAAATTGTCTCATTTTACCAGGACTTACGAGAAGGTC
ATTTCAACGCCAATAAAAGTAATAAGGTTTTGGAAGAGCTGAAAGCGAAC
GGGTTAACAAAAATGGGTGATCTTTTGAAACACTTTGAATACACATTTGG
TGAGATTATGGAAGATTCCGTTTTAAAAGATATAGCACCAAGACCATGTA
TGTTTAAGGACCGAGAATGCAATAAGGATGAATTTACAGAAGTCATTTCT
GCCCACTATGGTTTGTGTTATCAATTCAACTCCATCTACTTGGAAATGAA
TCGTCTCTATGCAAACGAAGCTGGAGAAGGAGCCGGTTTGAGATTATATT
TGAACATTGACGAAGAAGATCTGTTGGTCAGTAATGTTCCATTTACTGGA
TTACAAGTTTTCGTTCATCCCTTTGGAGAGCCGTTTGAATCTGCAATTGC
CAGAAGAGTCCCCATCAGTCCCGGATCAATGAATTATATACATATTGATT
ACAGACAGTGGGAGTTATTAGAATCACCATATGCTTCAGCTTGCGCTTCC
AAAAACTACAATCTGGTCAAGAAAATTGTCCCATACTCACAATCGATGTG
CTCGGTCGACTGCACCATGTCAAAGATGATGGATAAATGTGGTTGTGTTT
CTGAAGAGTTCGCAAACCATTTAGAGGATAAAAACAAGACTTGCAAATAC
AATCAAATCCAATGTGTCGAACAAATGCTTGGAAATCTCCAACAAATGCT
ACATACATGCAGAGTCCAATGTCCCCGGCAATGTTTGGTCACCAAGTATG
GAATCTCAACTGGTCAAACAGCTATGGGAAACTCAAAAGTTTACAAAATG
CTGAAACAAAAACACAATAAAACCATAGATGAAGGATACGCCTTCATAAA
TAAAAATGTATTTGGAATTGATGTCACATTCTCTGATATCGTCTACTTGA
AAGAAACCATGTCACCTGCTCAAAACTGGATCTCTGTATTGAGTACTATT
GGAGGAAGTTTAGGACTTGCAATGGGATGTAGTGTTGTCACTTTCATCGA
ATTTATTGTTTTTGGTATTCAAGCGCTTTATTGGTACTGCAAATACAAAT
TGAGTGACGATTGTACGTCCCCACAAAAAGCTAATGCCATACAAACTTAA
AAATGACACAAATCTTTGATCAAAATTCCTTTTTTAGTGAGTTAAGCACC
CCTTTTTCCCAAGCCTCGTGGGACCCCTaccaaaatttgccaaagtaTCG
TCCCCTGCGCGAAATTAATCTAATGTTTATCCTCGCTAGAATGaaataat
ctgaaaaataaTATGCATTTGGCGACTTTTTTCACAAGAACTGATACTTT
TGCCTGGATCTTGGCTGtcatatatatttttcatgatttttagaatCGAA
TCTAGTTCTTAAGAAACTCTTTTTGCTCTGGGCTGAGAAAGAAAATGGAT
gaattctcaaatattatgcattatgcattatgcaatatgcattatgtttc
atgcattttggacctgccgttTTCTTATTCTTATTTTATACCAGTGGCTC
AATTTAGTAATAAATTAAACGCAGTAGGATTCCTTAGACTTTTagtaacc
tttttgtttcccTGCCGTCCATTTAAAAACTACAATTTATACTGTAATGT
TGTAAGTAATGCAATGTgtgttttcaatttaaaaattgtggtattttata
acaaaatttttctttttatgtatTTTAAACGTGTATTTTGTAGATTTATC
AATAACATCATATAATTATTTATCAACTAAAGACCTACATGGTCTCATCC
GTTTTAGTAGCTAAAGAAATACAGTAACTATATATTTTTTACAGATCATG
CAGGGTCATTTTATTTTCCTTTCATTTCTATATGACACTGTGTGTATTCA
TTTTGACCAGACTGttgcaattttaaaatttggaaagCTGATGGTCGTAC
TCGTTGCTTTTTTGATCTTCC
Run BLAST on NCBI

transcript from alignment at scaffold_242:777757..789718-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054355 ID=TCONS_00054355|Name=TCONS_00054355|organism=Clytia hemisphaerica|type=transcript|length=11962bp|location=Sequence derived from alignment at scaffold_242:777757..789718- (Clytia hemisphaerica)
TTTCAACTTGATATATTTTTCAAAGATCGCAAAGAGTTTGTTTTTCTATC
ATGGAGGTAAGTTTAAAATTTTTACTAATATATTCCCAACAATTTCAATT
TTTCCAAGATTCAAGAGATTGAATTCTGTAAATTATTCAATCTTAATATC
AAAATTTTATTTAATTTTCCAAGAAAATATTTTACTGTGTAAATTCTAAG
ATAATCAAAGACATCAAAACTAATAGAAGAAATTATTGACTCTTGAGCGG
AAAGTGGGTGAAGCTGAACTACACCCTAAATCGAGATTACCCCTAGCTAT
TATAAAGATCACATAAGGATTAACTCCATTGTTGAGTTATTTAAAACCTA
AATTAGAATCGTTAAATAAACAAAAAGTTTGAAAGTGATCTTCCTGCAAA
TAGATCGTGAGGAGCCAATACCATGGAAAAGGAAACTTGACCAAAAGTTT
CAAAATATGTAGAAAATTCCAAAATTTAGACTTGGCTCCGAGCCTTATTT
TTTCAGAGAATTTCAGCCTCGACGTTTGTTATTTATTTCCTTATTTATTT
AGTCGCTAAGGTTCGGTTTGCTAAGTCTGTAACTTATATGTATACGTATA
ACAATAGACTACCGTACAGAAGAAAAATGTTTATTAAATGTTACGTCAAT
ACTTTGTCATCTTTTTGTTTAGGCTTTTCTAAATGTGTGCAAGTTCCTAA
CTTGTTTTCTCATTCTCAGCCTGAGCAATTCATTAACAATGAAACAAAAA
AAAACGTGTAATCTAATCATTTTTTTTTTTTCATTTTTCAATTGATTATA
ATTGCAGTACTCTGTACCAGAGTGTATCTCACGATTATCGTAGCGTAGTT
TTGAAATTAGCCGTAGATATTGGGTTCCCGGGGGGGGGGGGCAGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCGTCGGTCGA
CAAGGGTAGTACCCCCCCCGGGATTGGGTTTGTGTACAGACAATAATTGC
AGAGGCTGATCCGAATAATTTCTTGTGGGAATTTATAAATTATGAATTAT
TTATAATTATGCTTTTATTAAAACGTAATTTCTCTGGAAAATTCAAAAAT
TGGTAATATAATCATGATATCACGCAATTTTTTGTCTTCAATCACGATCA
CGCAAATCAGTAAAAAATGGACGGAAAAAGTCCGAATCACGTATCACGGC
TCAAAAATCTTTCAAATCACGATTATTCTGACCTCTCATCATGCAATCAT
GAAGAAAAAATTCTAAATCACGTAAGCACGCTGCGAAAAAGTCTTTATCG
CGTCATCACGAAAACTGCTCGGGGGCCTCCTAAAAAGGGAGTCATTTTAG
GAGGTGAGATAAATTTGAAACGATAGTTAACCTGGGTGTGGAGTAAGCAG
TGTTCGAGGTGTTCACATGTTGTTCCAAACTTTAACACCGTTTTTTACCG
TTAAACCCTCGCGCATATTTATTTTTCCCCGTTTACTATCCCTCTAACGG
GCAATAGCATCGTTTAGTTTAAGCGCAAATAACTTTAGAATAAAACTTTC
TCTATATTAGAAATGTTTTCCAGAAATTGCACTCTTTTAAAAGGAATAAT
TAAGATTTTTTCAATTTTCATCGTCCGTGGGGAGGCTAAAAGTAGATTTT
GTGATTTCCACAACTTTTGACGAAATTTTGAATTTTGAAATTTGGAGCGC
TAAAGATTTTTAGCTCATTTCTAGCTTTGTGTTGATTTTACTTTTAAACC
TTTAAAAAAAAGGCTACAGGATATGTCTAAGAGAGAAAAATACATAGTTA
TAACTTTATAATTGAATTTTTGAAGTTAATATTTTCCATTATTTATCACG
CTGCGTCCCGGATACTAAAATATAAGAAAATAGTTTAATATCAATTCAAG
CTGTTTTCATTTCTTACTATTTAATTTCCGTAAATTTTAAATGGAAGCAA
AAAGAAACGGTAAAATATACACTCGTCAAAATATAAGACGGATAGACAGA
GGCTTACAATAATTTTTTTGAATGATCCTTTCTTACCAAATTTGTGAACA
GGAGACGGCCCGAAGAATCTGTATTGTCCGAATATATCAACGATGGAGGA
TGTATGTAACATTTTAAAGACAGTTTCTAAATATACGATAAATTTTTGAT
ATTAGCACCCTTGTATTTTCGTTGTGTACAGGGGTGGGGTTACTTGATCA
CTTGATGAGTATATACTCCCCTGTTGCAGTGATCTGGAGAGTTCTAGAGA
GTGATCTAGAGAAAATAGGGTACACGTTTTTTTTATAAGAACGTCAAAAA
TTTTCGAAGCCTTCGGATGTTCTTAATTTTTTGGATTTGAAGCCTAAAAA
TGTTCTTAAAATGTTCTTATTTTCAGCATTTTTTGAGCATTTTGATGTAA
TTTCTTAAGAAATTGCATGTTTTTAAGTCTCGAAAGCCTTAGTATGTTCT
TAGAATGTTGTTAAATTTTTGGGCCTCGAAGCCTTATGTTCTTATATAGT
TTGTTCTTATAAAAAAAACGTGTGATGGAAATATATAATCTGGCTTGTTT
TTTGATGGGTGAGGATTACTTTCTTTACTGCTCAAATCTGAGCTATAATA
AATCAAAAATAAAAAGCTTGTTATACCAACGGGTCAAATCTACGTACACC
GTCATTTAGTAACAATCAAATATCTTGGCCAACAAATTATAAAATGCTAT
TTTAAAATAATGGTTGGAATGCCTAGAAAAAAACAAGATGCTCAATTTTA
ATTGAAAAAAGTGTAGCAATTAGAGATATTTTGCTCATTTCCTCGCTTAA
TTGTGTCTAATCATGCCGGAAAAAGCAAGTATGTAAAAATGCATATTTTG
ATTATTTCAGCATACTGTACTCATTATAAAAAAACCCGGTCTGGCAATGT
ATTGTTTTAGCTTAATTGTCAATCATTCCTTTGCTCTAAGTAATAGGCAA
GTGGTGATTTGCTCACTTTTTGATCACTTTTTTTGTGTTATTTTTGTAGC
CCTACCTGGGACTTACGGAGGTGAATAAAGATAACCTGAGCAGCGGCACA
TACCGTTAAATCTTATCAGAATTGTGAGTTGGATTACTTCTTAAAGGACA
TAAACTCTGATACTTAAAAGAAGCCTGGAGAATAACGACTTTGGTGATTG
CAGGATGCAATGTATTATACGCATTTCTGTGTACTTAACTTTGAGGTCTG
AAAGCTTCCAGGGATATGTAATAGCGTAGCTGGATAACGCACATTTGAAA
AAGCCTTGTTCTATCTCTGTACGCTGACATTAAAATTTGGTATAAAATTT
AACTTTTTTAATTACAAACTCGTGAAATTTGAATTTCAATGATTCTGCTG
CTGCATTTATCCTTCACGATTAAAATTAAAGAGGAATCATGAAAAGCTTC
TCAAATTCATGCAACACGCTGATAAAATTAGATTTCATTTAAAGGAAGCT
TTTGGGGTATCTTCTGAAAATATTATCTTGATGAAAAGCAGGAACATCTT
AGCAAAAAATGTGCAGACGTATAATGCATGAATAATTTGACTGCTTCAAT
TTTCTTAAAAAACAGAACACTCAAGGGGACAGAGATGGATTTCTATTATG
AAGAGTTTACTATAGAAAAGACGCTAAGAATCAATCCGCTAAGGAATTCT
CGTCCTTCATGGATCCAGCTACGCTATTACTTATCCCTGAAGTTTCTAAG
GAATTACAGCGATGGGGTAAAGCATGTAAACTTGATGTCTGAAAGTTGAG
ACACAAAATATTTTTACTTAATGACAACGACATGTTTTGATCTAAGTTCT
TTTCCTCAGGACACCCTGCATAAAAGTAGGATTCTAGAGTTATGTTGGAT
TCGAAGGACTATCCTCTTTTAATATCACAATTACTAGTTAATTATATCGA
TCACGCTGAAAAATAATTACGATAATGATAAGTATCAATTTTAAAGTGAC
GTGTTGGCCATTAGAGAAAATCTTAATTGCACGCTGTAATGAGGTTTTAT
TGCTACTTTTAGAAAGGGTAAAAGCATCATTAAAATGCCTGTTTAAAAGA
GTTGATGAGCACGGTGCGGTCATATTTCTTTGTGCTAACTGATTGTTGCA
ATTAAGTTTTAGCGATAAATAAGCTTTGATATAATAGCACAGCGCGACGA
ATCTAAAAATAGTAACAAATCTGTACAAATTTATTCGTTTGTACGAGTTG
CAATCCCATCCTCCTTTGCGTTAATTGCTCTTACAACAATAAAAGGTTAT
AACTTTTATGATTTTTCAATCATTTCGAAATGAACTGTGGAATTGGAACT
CGTACAAATTTCAAACGCTATTAAAATTCAAATCTTTACTTGGCTATTGA
AGTGTTGCGTTGTGGTTGACCTAAGAATAAGGGTTAGGGTAAGGGTCATC
GCCTGATGGGGTACAAGTGTATGTAATTCACAAATCTAAGGGGGGGATTT
AAGTTTATGGTCGGGTCCTTATATATGTAGTCAGGGGGGATTCTGAGGAA
CGTTAGATTATTCATTTATGAGTCGTAGATACATACGTTCTTATTTTTTT
GAGTATTTTTGTCCATTTTCTTAAGAAATACGGTGTTTTAGAGTCCGCAA
AGCCTTAGAATGTTCTTAACCGTTCTTAACATTTTGGCCACCAAAGCCTT
ATGTTCTTATATAGTTTTTTTCTTATAAAAACGTGTTTTGGAGGTATATG
TATACAAGTCTGCAATTTAAACTTTGAAGAACCATCCCTCAATCAGAGGC
GCCGGTAACGATATTTCCTCAATCAAAGTTTTACGTTATATTTTCATTGA
TTATTCAATGAAGGTGATGTTATTCTTAATTCATTTATTTCAAGTTAGTT
TATGATTTATAGATAGATAGGCAAGATTTACACAATTACATCAGTAAGGA
AAATTTAAAAGAAATAAGTTTGATAAATGTTGCAAATGTCAAAAATGCGT
TGATCTAGGCTTAACCTTTAACAAACTACATTTACTGTTGGAAATATTGC
ACACTTTAGCAAACAAAATTTACAAGTGGAAAATTATATGGAATTCTTTA
GCTTATCCAAAAGTTTTACTATTCACAAAATCTTTACTTGAAATTGAAAA
GAATTGAAGTCATGGCGTACGGTCAAGAACTTCTTTTGGACAGAACGATT
TTTAAAATGAAGGTATATGCTTTTCCTAGACGGAGACAGCCATAAAATAG
AATGCATCCCTTATCGGGGAAAACTTCGTCGGGGAAAAGTGACGAAATTT
TGGACAAATGACGAATATTTTCCCCGACGAAAATTTTCCCCGGCCTTTGG
TCTAATTTCTTAGGAAATCGGGTGTTTTAGAGTACACAAAGCCTTAAAAT
GTTCTTAATTTTTATGTATTCTTATCTTCTTTAAAAAACGTGTATGAGAT
TAAAAACGAGTGAATTCGCTGCAAGAATTAACCTTTTTGTGACTTGAAAG
GTTTATCACACCCCCTTCTCACAGACTCCGTAGGATTTTTTCATTCAGTG
GGAATAAAAATAACGGACTGAAACTTGATGAGGGTTTCAATTCTTTTGTT
TTCGACAGAAAATCCAGTGGGGATCGGAAAAATAGCATAATATTTTGATT
ATTTTCAGTGGGAACAAAAATTGGTCGGAGAATTTTCTACCGCGGGGACG
ATATTTTGGACAATTGGTGGATTGCCTTAGTCTTATCCTCCTTTTGGTCT
TGCAACTTGTCAATTTTTTTTGAAATTTTCAATTTCTAAAGAAGGCTTTA
AACTAGTGTAGATGTTATGCGAAGTACTAGGTACAATGGATAATGGCATA
TCATGTCTCTTTAAACTTTATTATTTCCAAAGTATCTTTAACCAACATGC
TTTTGTATAGCACGTTATCTGCGTTCGAGCTTTAAACCACAAATTCTGTT
AAATATTTTTTTTGATGTTATATCCACTTTCGGTTACATAAGTATATAGA
AAGCGTAAAGTCTATCTAGTAGTGGTAAATATATTCGACCTCTTATCTTT
AAACCCTAAAGCAAGACAAAAACTACCGCTATATCTTTACCAAATAAATG
TGTTCTATAACTACGATAGAGTGCCTTTAACTCGAATTTTCCATCGCACT
TTTCCAACAACACCGTCACTTTAGCTTTCTGATTTAGGTTCCTTTTCCAG
TTTTGATATATCAGTCAAAAAAAATTCTATCAAAATAACATTAATTTACT
GAAAAAGGTGGTGTTGCCTGAAAAAGAAATATAATTTTCATTGCCCTCCC
AGCGGATTTTATTAAAGCTACTTCCTATTCATAAAAATTGGTAATTGTTT
GGATACGAGGCAAGTGATGTTCGTGCAGGGGAGGGTACTAAGGTTACGAT
CTGACGGGTATGTGTCGCCCGACTTTCGACCCTTGAATCCTTAGTGGGAC
TAAAAAGGAGAAAAAATAGGAAAATTCTGCGATTTTTTCGACCCTTATTG
GGACTAATTTGACCAAATTTTGTTCTTTCAAAGAGCAAAAAGTATTTTTC
TGTTTTTCCGACCCTTAGTGGGACTGAAATTTAATTTTCTGGTTTTTCCA
ACCCTTACAGGGACTTTAAGGTCCCAAAAAGGCACCCTTAAGGGCGGTAC
ATACGCGTATCCTTCACTTGCCTAAGCCCCCCCGGGTGTTCGTGACGGAA
TTTTAATAAAAGGTCTATTCATTTCTGATGTTCCTGATTCAGAAAATCAA
ATTATTTCGGGGATTTAATTCTCTTAGGGGTTAGAAAAGATTACGTTATA
CACTTTCTAGACATTGGAAAGGAAAATCTAATGAGTTACTGTTCTTTTTT
CTTAGAAATCAGCGTTCCTGATCGACAACTCCCACAAAATGGAGGGACAA
AAAGCAAAGGAGAAATTAAAGACAAAATGGAAAGATTTGTATTCAAGTTG
CAGTTTTGATGGTTTTCATTACATCTTTGACGAGCGTGGTTTTCTTCGAA
TCTTTTGGTTATTGATGGTCCTGGGTGCAACAGCTCTCAGCATTGTGCTT
TTCTATGGTGTCATCGAAGAATATTATAACTTTAAATCTCACACAAGTAT
TGAAGAAGTATTAAGCAATGATAAGGTTGAATTTCCAACTGTAACTATTT
GTAATATAAACGCTGTCTCTAAGAGGAAAATTGAAAAAGCAGGGTACAAT
TCAAGTGTAGAGGAAATTGTCTCATTTTACCAGGACTTACGAGAAGGTCA
TTTCAACGCCAATAAAAGTAATAAGGTTTTGGAAGAGCTGAAAGCGAACG
GGTTAACAAAAATGGGTGATCTTTTGAAACACTTTGAATACACATTTGGT
GAGATTATGGAAGATTCCGTTTTAAAAGATATAGCACCAAGACCATGTAT
GTTTAAGGACCGAGAATGCAATAAGGATGAATTTACAGAAGTCATTTCTG
CCCACTATGGTTTGTGTTATCAATTCAACTCCATCTACTTGGAAATGAAT
CGTCTCTATGCAAACGAAGCTGGAGAAGGAGCCGGTTTGAGATTATATTT
GAACATTGACGAAGAAGATCTGTTGGTCAGTAATGTTCCATTTACTGGAT
TACAAGTTTTCGTTCATCCCTTTGGAGAGCCGTTTGAATCTGCAATTGCC
AGAAGAGTCCCCATCAGTCCCGGATCAATGAATTATATACATATTGATTA
CAGACAGGTAACATATTCTTAATTTTCATCCTTGAGGTTTCCGTTCATGA
TCTTACGTAAATATGCTTTCAAATGAAGTCATAGTAAGCTCGTGTGCCTT
TCTCAATGAATATAATAACAGAGATATTCCTTTGCAATCATTATCATACA
CGTCCCATTCTGCATGTAGAAAGAAAGAACCATTCTAACATTTATGGTCA
CATACTTCCTTGGTTAGAATTGTTCTAATAGGATATTGAATTGAGACAAG
GGTGTCATTTTCATATCATTCATTCACAACCAGTATATATAATCAATCAT
TTCCTTTGGCTTTTTAGTGGGAGTTATTAGAATCACCATATGCTTCAGCT
TGCGCTTCCAAAAACTACAATCTGGTCAAGAAAATTGTCCCATACTCACA
ATCGATGTGCTCGGTCGACTGCACCATGTCAAAGATGATGGATAAATGTG
GTTGTGTTTCTGAAGAGTTCGCAAACCATTTAGGTAATTCTGATCCATCT
GCTCAACTTAGCTCAACTCTCTCAAAAACTCTTAGTCGAGATGTGTTGAA
ACCAAAATAATAATAATTATTTTGCTTTCCAGGATTTTTAACACCCCTGA
AAAGTTTGGTCTACGGTGAAATCAATAGCCTGAAATTTTGTGGATGGGCT
TTTACCGCAAATGAGTAAAATTTTGAAAATTTGGATTGAAATAGATTTCA
AAAAGTTCAACTCGTTTGGAAATGAAACTCATTTGATTAATTTCCATCCT
CACTGAGCCTCATTTCCCTTGTCTTGAGAAAAGGTTTAAAATCTTATACT
AAATTTGCAATATTTTTCTCTTTTATTTACAGAGGATAAAAACAAGACTT
GCAAATACAATCAAATCCAATGTGTCGAACAAATGCTTGGTAAGCACCTC
CAAATGTCTTTGTAGTGTTTAAAAAAATAGGATATAAAAAATCTTTCTTT
TTCCCTGAGGCTCATTCCCGACTAAATAGAAAAATATTATCAAAGGCATT
TAATACATGTATAATACATGTAAAACGGGCTCTTCCAGAAAAAAACCATT
CATGGGGGGTGGAGGATATATTGTCCAGGGGTAAATATTTGTGTCCAGGG
GGTCAATTCGATGCTTGTCCAGGGGTGAAACACGTGTCCAGGGGGTGAAA
AATCGAAATGTCCAGGGGTAGATCAAAGACAAAATAATATATCCTCCACC
CCCCATGAACGAATTTTTTCTGGAAGAGCCCAACTTACTTACTGTATGAC
CAACAATAGTTGAGAATTTTCGGAGATCTTTTTGCCATTAAAATTTTCTA
ACATAAAGCGTGTGAAGTAAAAGGAATATTTTAGTCTTAATCGCAGACCT
TTATAGATATACTTCCTATAAGGAACTATTTTCGCTAGAGGATAGGCAGA
AGTCTAGAAACATTTTGATACAAAGATATTTATAATGAATTTTACTTATG
CGTTCTTCCTAATCAGGAAATCTCCAACAAATGCTACATACATGCAGAGT
CCAATGTCCCCGGCAATGTTTGGTCACCAAGTATGGAATCTCAACTGGTC
AAACAGCTATGGGAAACTCAAAAGTTTACAAAATGCTGAAACAAAAACAC
AATAAAACCATAGATGAAGGATACGCCTTCATAAAGTAAGTTGATGTTAT
GATGACTCATCGCTTACCAAACACGATTCTAACCTTCTTACTTTCTGAAT
CAAAAAGATATGAGCATCCACGTGCTTCAGTTTTTTTTACATCCTCATAA
AACTCGGCAAAATACTTCTTCTTAGTATTGTCTAATAAGAACTGATTAAA
TCAAAAATCAATTTTTAATACAGTTGAAACTCCGTAACTCGAACACCCCG
GCTCGGAAACGCACGGAAGACACTAATTTGCTCGAGTAATAGAGTAACGT
TTATAACGCAGTGTAAACTGTAAGTGACCATGAGACTTGTTCGAGTTAAG
GAGACATTCGAGTTATAGAGGTTCGAGTTATTGATACTTCACTGTATTTG
TTTTTTTTCTCGTAGTAAAAATGTATTTGGAATTGATGTCACATTCTCTG
ATATCGTCTACTTGAAAGAAACCATGTCACCTGCTCAAAACTGGATCTCT
GTATTGAGTGAGTATTAAACTATTTATATTTGTAACTTTAATATGGAAAA
TTGTGCCTGCTTATAATGCAAAGTCTTTTTCTGATCTATTCATTCTTGTA
TTCGTTTAATTTTTTCACATTTGAGTTAATGATTACATCAGGGTCAAAAA
TAATGTAGCACCGAAATCAAATCAAACGCTCCTTTTGACAGTCCGCAGCA
TATCTTCTTAACCCTTTGAGTGCGTTTTTTTTTTGAAAAAGTTGAAATTT
TTTTAATTTTTCTTTTGAAACTTAAAACTCTAAACTGCCATAAAAGCTTG
TAGCTTATGATTTAGAAGATGGTTTTGGTACCATATTAGAAAGCTATTTG
TACACTCTTTCTAAAAACATTCGGTTTATGCCCCTTTAAATCGAGTGGTC
AAGAGCTATGACCTAAAGTCTGAGACTCAGTATTTTGGCTTGTTTTGAAC
GCATATGCGCGTCTCTAATATGGTCTAAGGGTTAATTAAGTTAATATTCA
TCTGGTGGTTGTTGGTGGAGCAGGGAGTTAGGGAGTCTATACCCTATTCA
TTTCATACCGAGTTTATGTATGTGTGCTTTTCAGCGACGGAGACGGTAAG
GTTCTGATTTGACTAGATCATGACCAACTGAGGACGACGGTAAATCAGTA
CTTTTACCGTCCTCGATTTTGCGGGTCAGAATTGTGGGTTTTCCCAAATC
ACTTCAGTCACTTTACCGTCCTCAAAAGTGCAAATACATAAACTCGATTA
TGCTAGACCTGGGAGGTCTTTAAGAGTCTTTTGTTGTTAACAATATCCAC
TAGCTTATAATTGTTTGTATTTTTCTTTCTCAGGTACTATTGGAGGAAGT
TTAGGACTTGCAATGGGATGTAGTGTTGTCACTTTCATCGAATTTATTGT
TTTTGGTATTCAAGCGCTTTATTGGTACTGCAAATACAAATTGAGTGACG
ATTGTACGTCCCCACAAAAAGCTAATGCCATACAAACTTAAAAATGACAC
AAATCTTTGATCAAAATTCCTTTTTTAGTGAGTTAAGCACCCCTTTTTCC
CAAGCCTCGTGGGACCCCTACCAAAATTTGCCAAAGTATCGTCCCCTGCG
CGAAATTAATCTAATGTTTATCCTCGCTAGAATGAAATAATCTGAAAAAT
AATATGCATTTGGCGACTTTTTTCACAAGAACTGATACTTTTGCCTGGAT
CTTGGCTGTCATATATATTTTTCATGATTTTTAGAATCGAATCTAGTTCT
TAAGAAACTCTTTTTGCTCTGGGCTGAGAAAGAAAATGGATGAATTCTCA
AATATTATGCATTATGCATTATGCAATATGCATTATGTTTCATGCATTTT
GGACCTGCCGTTTTCTTATTCTTATTTTATACCAGTGGCTCAATTTAGTA
ATAAATTAAACGCAGTAGGATTCCTTAGACTTTTAGTAACCTTTTTGTTT
CCCTGCCGTCCATTTAAAAACTACAATTTATACTGTAATGTTGTAAGTAA
TGCAATGTGTGTTTTCAATTTAAAAATTGTGGTATTTTATAACAAAATTT
TTCTTTTTATGTATTTTAAACGTGTATTTTGTAGATTTATCAATAACATC
ATATAATTATTTATCAACTAAAGACCTACATGGTCTCATCCGTTTTAGTA
GCTAAAGAAATACAGTAACTATATATTTTTTACAGATCATGCAGGGTCAT
TTTATTTTCCTTTCATTTCTATATGACACTGTGTGTATTCATTTTGACCA
GACTGTTGCAATTTTAAAATTTGGAAAGCTGATGGTCGTACTCGTTGCTT
TTTTGATCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034273XLOC_034273Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054355-exon-scaffold_242-1575043694:789663..789718TCONS_00054355-exon-scaffold_242-1575043694:789663..789718Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1575043694:781662..782513TCONS_00054355-exon-scaffold_242-1575043694:781662..782513Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1575043694:781186..781351TCONS_00054355-exon-scaffold_242-1575043694:781186..781351Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1575043694:780780..780836TCONS_00054355-exon-scaffold_242-1575043694:780780..780836Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1575043694:780034..780202TCONS_00054355-exon-scaffold_242-1575043694:780034..780202Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1575043694:779562..779653TCONS_00054355-exon-scaffold_242-1575043694:779562..779653Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1575043694:777757..778735TCONS_00054355-exon-scaffold_242-1575043694:777757..778735Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1510915933:789663..789718TCONS_00054355-exon-scaffold_242-1510915933:789663..789718Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1510915933:781662..782513TCONS_00054355-exon-scaffold_242-1510915933:781662..782513Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1510915933:781186..781351TCONS_00054355-exon-scaffold_242-1510915933:781186..781351Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1510915933:780780..780836TCONS_00054355-exon-scaffold_242-1510915933:780780..780836Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1510915933:780034..780202TCONS_00054355-exon-scaffold_242-1510915933:780034..780202Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1510915933:779562..779653TCONS_00054355-exon-scaffold_242-1510915933:779562..779653Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1510915933:777757..778735TCONS_00054355-exon-scaffold_242-1510915933:777757..778735Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1491911889:789663..789718TCONS_00054355-exon-scaffold_242-1491911889:789663..789718Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1491911889:781662..782513TCONS_00054355-exon-scaffold_242-1491911889:781662..782513Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1491911889:781186..781351TCONS_00054355-exon-scaffold_242-1491911889:781186..781351Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1491911889:780780..780836TCONS_00054355-exon-scaffold_242-1491911889:780780..780836Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1491911889:780034..780202TCONS_00054355-exon-scaffold_242-1491911889:780034..780202Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1491911889:779562..779653TCONS_00054355-exon-scaffold_242-1491911889:779562..779653Clytia hemisphaericaexon
TCONS_00054355-exon-scaffold_242-1491911889:777757..778735TCONS_00054355-exon-scaffold_242-1491911889:777757..778735Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:777757..789718 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.5288	10.6848	3.21495	2.5494	203.66	106.417	13.8249	12.3051	8.75057	13.5154	7.31379	4.99047	0.489446	2.31119	1.93628	0.242953	0.992724	1.0569	0	5.74921e-06	0.956452	1.30593	8.63542	6.28609	2.67052	0.818649	0	0	4.32313	4.23876
Blast
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BLAST of TCONS_00054355 vs. Swiss-Prot (Human)
Match: ASIC1 (Acid-sensing ion channel 1 OS=Homo sapiens GN=ASIC1 PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 5.342e-26
Identity = 119/472 (25.21%), Postives = 204/472 (43.22%), Query Frame = 3 
Query:  144 SSCSFDGFHYIFD-ERGFL-RIFWLLMVLGATALSIVLFYGVIEEYYNFKSHTSIEEVLSNDKVEFPTVTICNIN-----AVSKRKIEKAGYNSSVEEIVSFYQDLREGHFNANKSNKVLEEL--KAN--GLTKMGDLLKHFEYTFGEIMEDSVLKDIAPRPCMFKDRECNKDEFTEVISAHYGLCYQFNSIYLEMNRLYANEAGEGAGLRLYLNIDEEDLL-----VSNVPF-TGLQVFVHPFGEP-FESAIARRVPISPGSMNYIHIDYRQWELLESPYASACASKNYNLVKKIVPYSQSMCSVDCTMSKMMDKCGCVSEEFANHLEDKNKTCKYNQI-QCVEQMLGNLQQMLHTCRVQCPRQCLVTKYGISTGQTAMGNSKVYKMLKQKHNKTIDEGYAFINKNVFGIDVTFSDIVYLKETMSPAQNWISVLSTIGGSLGLAMGCSVVTFIEFIVFGIQALYWYCKYKL 1502
            SS +  G  +IF  ER  L R  W L  LG+ A+ + +    ++ Y+++   T ++EV ++ ++ FP VT+CN+N      VSK  +  AG      E+++   +  E         K LE L  KAN          ++ F    G  + D +L       C F+   C+ ++F +V+   YG CY FNS      RL   + G G GL + L+I +++ L          F  G++V +H   EP F   +     ++PG   ++    ++   L  P+ +  A    + +     YS + C +DC    +++ C C       H+      C   Q  +C +  L  L +      V C   C +T+YG       + +    K L +K NK+      +I +N+  +D+ F  + Y       A     +L  IGG +GL +G S++T +E   +  + +    K+KL
Sbjct:   23 SSSTLHGLAHIFSYERLSLKRALWALCFLGSLAVLLCVCTERVQYYFHYHHVTKLDEVAAS-QLTFPAVTLCNLNEFRFSQVSKNDLYHAG------ELLALLNNRYEIPDTQMADEKQLEILQDKANFRSFKPKPFNMREFYDRAGHDIRDMLLS------CHFRGEVCSAEDF-KVVFTRYGKCYTFNSGRDGRPRLKTMKGGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPFIDQLG--FGVAPGFQTFVACQEQRLIYLPPPWGTCKAVTMDSDLDFFDSYSITACRIDCETRYLVENCNCR----MVHMPGDAPYCTPEQYKECADPALDFLVEKDQEYCV-CEMPCNLTRYGKELSMVKIPSKASAKYLAKKFNKS----EQYIGENILVLDIFFEVLNYETIEQKKAYEIAGLLGDIGGQMGLFIGASILTVLELFDYAYEVI----KHKL 465
The following BLAST results are available for this feature:
BLAST of TCONS_00054355 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASIC15.342e-2625.21Acid-sensing ion channel 1 OS=Homo sapiens GN=ASIC... [more]
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