TCONS_00054358 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054358
Unique NameTCONS_00054358
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length377

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054358 ID=TCONS_00054358|Name=TCONS_00054358|organism=Clytia hemisphaerica|type=transcript|length=377bp
gcctaaagtatataagaacATTTATGATGAAATATACCTCTTAAGAATTC
CAGTGTCATTATGAGCccaaaaaaggaattttaaactcaaaattgatGAC
AacattgaaatattatttttcataacttttagaattaaaaaaaagaccAT
TTACAAATAAATTATCATCTAGTATATTAATCTTATCATACCAAAAAAAT
ATACAGGGCCTTAAAGAATACAGTAGAACCTTATCAGAAATCATCTAGAA
tatttacaaaagaaataagcGCTCGCGGAACAAGATCTTAGATGGTCGTT
GAATCCGAGGGTTGAATCAGCCATCTTGGATTTCATTTGATTTATTCCTC
CTCATCTTGTCGTACGACAGGTACACC
Run BLAST on NCBI

transcript from alignment at scaffold_242:822709..823542-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054358 ID=TCONS_00054358|Name=TCONS_00054358|organism=Clytia hemisphaerica|type=transcript|length=834bp|location=Sequence derived from alignment at scaffold_242:822709..823542- (Clytia hemisphaerica)
GCCTAAAGTATATAAGAACATAAGGCTTCGATGGACAAAATGTCAAGAAC
AAGTTAAGAACATTTTAAGGCTTTATCAGACTCTAGAACATCGAATTTCA
TAACAAAATGGACAAAAATACTCAAAAAAATTGCGAAAATAAGAACATGT
TAAGAACATTTTTAGGTTTAAAACTCAAAAAGTTAAGAACATCCCAGGCT
TCAAAAATTTTGGACGTTCTTATGAAAAAAAATGTGTATTTCCACCAATG
TTACTAAAAAAATATATATATCTGCCGAACAAATCTGAAATCGTGCTTTA
GATCAGGTGTTTTGTCTTCAAAATGAAATTTTCAATACGGGAGTGGAAAA
TTACCAAGAGGTATATTTATAAAAATGTATCTACGTGGCCTTTATTGAAT
AGATAATTTTTTTGCGGTGAGACATATTTAGTGACTGAAAATTTTTATTT
ATTGGTGAAGTACTTGATAAAGCCACATTTATGATGAAATATACCTCTTA
AGAATTCCAGTGTCATTATGAGCCCAAAAAAGGAATTTTAAACTCAAAAT
TGATGACAACATTGAAATATTATTTTTCATAACTTTTAGAATTAAAAAAA
AGACCATTTACAAATAAATTATCATCTAGTATATTAATCTTATCATACCA
AAAAAATATACAGGGCCTTAAAGAATACAGTAGAACCTTATCAGAAATCA
TCTAGAATATTTACAAAAGAAATAAGCGCTCGCGGAACAAGATCTTAGAT
GGTCGTTGAATCCGAGGGTTGAATCAGCCATCTTGGATTTCATTTGATTT
ATTCCTCCTCATCTTGTCGTACGACAGGTACACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034274XLOC_034274Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054358-exon-scaffold_242-1575043694:823524..823542TCONS_00054358-exon-scaffold_242-1575043694:823524..823542Clytia hemisphaericaexon
TCONS_00054358-exon-scaffold_242-1575043694:822709..823066TCONS_00054358-exon-scaffold_242-1575043694:822709..823066Clytia hemisphaericaexon
TCONS_00054358-exon-scaffold_242-1510915933:823524..823542TCONS_00054358-exon-scaffold_242-1510915933:823524..823542Clytia hemisphaericaexon
TCONS_00054358-exon-scaffold_242-1510915933:822709..823066TCONS_00054358-exon-scaffold_242-1510915933:822709..823066Clytia hemisphaericaexon
TCONS_00054358-exon-scaffold_242-1491911889:823524..823542TCONS_00054358-exon-scaffold_242-1491911889:823524..823542Clytia hemisphaericaexon
TCONS_00054358-exon-scaffold_242-1491911889:822709..823066TCONS_00054358-exon-scaffold_242-1491911889:822709..823066Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:822709..823542 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.350052	0	0	0	0	0	0	0.733638	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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