TCONS_00054464 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054464
Unique NameTCONS_00054464
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054464 ID=TCONS_00054464|Name=TCONS_00054464|organism=Clytia hemisphaerica|type=transcript|length=638bp
GGACAAAATTTTGACAGGCCAATGATTTATCATAAACGTGaagatgttta
tatacttcaACCATATTGCCAATTTTAAGTCTGATTTTCAGTGTCGGAAG
GTTAATCTTACGGAGACGGTATTCGTAAGATTTGTTCTTGTACCCGCTAA
CCAGTCTCGTAGTCCTTTGCTGAACACTCTCGATGGCATCGATATGTTTG
ATGAGTCGTGGAGACCAAACGGTTTGATCGTACTCAAGACGAGGTCGGAC
GAACGCTATAAAAAGAGTGCGGAGCATTTCTGGTGAAAGAAAGTCAAAAC
TTCTGCTGATCAGACCAACGATTGAGctagctttcttgattttaccaaag
atgtgtttttcaaaattcagttcCCCGACGATAATCACTCCGAGATTTTT
TTCTTGATCCACGTGCTCCAGGATTAACCCGTCTATGCTGTATGGATGGG
CAtgtttgatgttccaaaattttcccagtGTTAGCACGTGTCATTTATCT
GGGTGGAATCTGAGTGGTCAGTCCTTTGACCATATTTCCATTGCGTCGAT
ATCATGTTGCAAGCGAATGGCATCTTCAGCACTATTTATCTCCTCAACAA
GCTTAGTGTCGTCTGCAAAGAGGTACATATCAGAGCTT
Run BLAST on NCBI

transcript from alignment at scaffold_242:829398..830035

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054464 ID=TCONS_00054464|Name=TCONS_00054464|organism=Clytia hemisphaerica|type=transcript|length=638bp|location=Sequence derived from alignment at scaffold_242:829398..830035 (Clytia hemisphaerica)
AAGCTCTGATATGTACCTCTTTGCAGACGACACTAAGCTTGTTGAGGAGA
TAAATAGTGCTGAAGATGCCATTCGCTTGCAACATGATATCGACGCAATG
GAAATATGGTCAAAGGACTGACCACTCAGATTCCACCCAGATAAATGACA
CGTGCTAACactgggaaaattttggaacatcaaacaTGCCCATCCATACA
GCATAGACGGGTTAATCCTGGAGCACGTGGATCAAGAAAAAAATCTCGGA
GTGATTATCGTCGGGgaactgaattttgaaaaacacatctttggtaaaat
caagaaagctagCTCAATCGTTGGTCTGATCAGCAGAAGTTTTGACTTTC
TTTCACCAGAAATGCTCCGCACTCTTTTTATAGCGTTCGTCCGACCTCGT
CTTGAGTACGATCAAACCGTTTGGTCTCCACGACTCATCAAACATATCGA
TGCCATCGAGAGTGTTCAGCAAAGGACTACGAGACTGGTTAGCGGGTACA
AGAACAAATCTTACGAATACCGTCTCCGTAAGATTAACCTTCCGACACTG
AAAATCAGACTTAAAATTGGCAATATGGTtgaagtatataaacatcttCA
CGTTTATGATAAATCATTGGCCTGTCAAAATTTTGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034328XLOC_034328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054464-exon-scaffold_242-1491911889:829398..830035TCONS_00054464-exon-scaffold_242-1491911889:829398..830035Clytia hemisphaericaexon
TCONS_00054464-exon-scaffold_242-1510915933:829398..830035TCONS_00054464-exon-scaffold_242-1510915933:829398..830035Clytia hemisphaericaexon
TCONS_00054464-exon-scaffold_242-1575043694:829398..830035TCONS_00054464-exon-scaffold_242-1575043694:829398..830035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:829398..830035 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.472832	0	0.472986	0	1.02716	1.32466	1.54961	1.85654	1.05461	1.73416	1.70724	1.61277	0.876137	1.65292	0.763159	1.01923	2.17337	1.65757	1.77923	0.771201	0.507378	0.792177	0.65523	0.985214	1.58417	0.648633	0	0.499032
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054464 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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