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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054470 ID=TCONS_00054470|Name=TCONS_00054470|organism=Clytia hemisphaerica|type=transcript|length=1333bp
tgcggtttttcgcaaaattggcaaaacctaaatttaagtaacaccgattt
tcatgttctacattgtgatgcgcttctttaaaggtataatttattatgct
aggaggggtgatgatgggtccgaagaattaacgaaaatttggacatgcat
taatttacccgagatTGGATTGTTGTATTGGATTTAACAAGTTTAGTGTG
ATTTTGCTAAAAGGAAAATTTGCAGAACGATCGTGATATTTTGGCTTGAC
GTGCGTTCGACTGTTTACCTCGACTATCGATATAACTACGATCCGTTTTC
GTGAGCTCACTCCAATTCTTGTGGTATATATTTGATTAACGCCTTTCCTT
GAATATACAATGGGCGCCATATCGAAATCTCATTTGAATGTGTTTAACAT
CACTGTTGGTGTCGCATTGACCATTCTTATTTTATCTTGCATCGCTGGTA
ACAGTTGGCTTATCAATAAACGTTTACAATCCTTTTCTGGTATCTGGCGA
AGATGTTATGAAACTTCAAATGAACAAGGTACAATATGTGTCCCTTATGA
AGCTCGAGATACCAAAGAAAAGTTATTAAGGACTTTCTTGATTCTGGCAG
CACTCTCTGCAGCCTTATGTATTGGATTCTCAGTCTTGGCAATTTATGTG
AAGTACATTAACCATATTCATGTATATTTCATCATGTTTCTAACTTTCAT
TTGTTTAATATGTTCAGTTCCTTTGAAAACGCAGCAAATTATTTTGGAAA
TGGAAGCTAAGAAAGATGACAATTATTATGCTTTTGGATGGGCGTTTTAT
GTTAGTTGGATCAGCACATTTTTAGCATTGGTGTTTGGTATTTGTGGATT
GGTTGGTCTGCGTTACTTAGAAGGAcctgaagaaaatttcgaagaaCAGA
CTGATGAActgatttttgaaagattttgattttaatattaaGTATCGCTT
ACATTAACTTCCCAGCCGCGTCACACAACGTCAAATTAATGACTAAACCC
GTTTCAAACAACGAAGTTGACCGATTGAATTTGAACCATTTCGAATATTC
ATCAACTATCTCATTAAACagatgaaataattttaagaaaagtttttatt
ataaaaatgagTTGAACGTATTCTTTAaacgctgtgatactcacggtaga
aATATTAGAATTTATGAGCAATATTATCAATTTTCGACAAACCGTACcat
tatttttaattatttgatGGAATTGGAATATAAAGACTAcaaaataatta
acataatattatggtattttctttatttcagaaAACGAAAACTTAATACT
TTTTACTAAAGATAAATTAGCGGTAGCccaaac Run BLAST on NCBI protein sequence of TCONS_00054470-protein >TCONS_00054470-protein ID=TCONS_00054470-protein|Name=TCONS_00054470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MGAISKSHLNVFNITVGVALTILILSCIAGNSWLINKRLQSFSGIWRRCY
ETSNEQGTICVPYEARDTKEKLLRTFLILAALSAALCIGFSVLAIYVKYI
NHIHVYFIMFLTFICLICSVPLKTQQIILEMEAKKDDNYYAFGWAFYVSW
ISTFLALVFGICGLVGLRYLEGPEENFEEQTDELIFERF Run BLAST on NCBI transcript from alignment at scaffold_242:947976..949308 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054470 ID=TCONS_00054470|Name=TCONS_00054470|organism=Clytia hemisphaerica|type=transcript|length=1333bp|location=Sequence derived from alignment at scaffold_242:947976..949308 (Clytia hemisphaerica)
gtttggGCTACCGCTAATTTATCTTTAGTAAAAAGTATTAAGTTTTCGTT
ttctgaaataaagaaaataccataatattatgttaattattttgTAGTCT
TTATATTCCAATTCCatcaaataattaaaaataatgGTACGGTTTGTCGA
AAATTGATAATATTGCTCATAAATTCTAATATttctaccgtgagtatcac
agcgttTAAAGAATACGTTCAActcatttttataataaaaacttttctta
aaattatttcatctGTTTAATGAGATAGTTGATGAATATTCGAAATGGTT
CAAATTCAATCGGTCAACTTCGTTGTTTGAAACGGGTTTAGTCATTAATT
TGACGTTGTGTGACGCGGCTGGGAAGTTAATGTAAGCGATACttaatatt
aaaatcaaaatctttcaaaaatcagTTCATCAGTCTGttcttcgaaattt
tcttcaggTCCTTCTAAGTAACGCAGACCAACCAATCCACAAATACCAAA
CACCAATGCTAAAAATGTGCTGATCCAACTAACATAAAACGCCCATCCAA
AAGCATAATAATTGTCATCTTTCTTAGCTTCCATTTCCAAAATAATTTGC
TGCGTTTTCAAAGGAACTGAACATATTAAACAAATGAAAGTTAGAAACAT
GATGAAATATACATGAATATGGTTAATGTACTTCACATAAATTGCCAAGA
CTGAGAATCCAATACATAAGGCTGCAGAGAGTGCTGCCAGAATCAAGAAA
GTCCTTAATAACTTTTCTTTGGTATCTCGAGCTTCATAAGGGACACATAT
TGTACCTTGTTCATTTGAAGTTTCATAACATCTTCGCCAGATACCAGAAA
AGGATTGTAAACGTTTATTGATAAGCCAACTGTTACCAGCGATGCAAGAT
AAAATAAGAATGGTCAATGCGACACCAACAGTGATGTTAAACACATTCAA
ATGAGATTTCGATATGGCGCCCATTGTATATTCAAGGAAAGGCGTTAATC
AAATATATACCACAAGAATTGGAGTGAGCTCACGAAAACGGATCGTAGTT
ATATCGATAGTCGAGGTAAACAGTCGAACGCACGTCAAGCCAAAATATCA
CGATCGTTCTGCAAATTTTCCTTTTAGCAAAATCACACTAAACTTGTTAA
ATCCAATACAACAATCCAatctcgggtaaattaatgcatgtccaaatttt
cgttaattcttcggacccatcatcacccctcctagcataataaattatac
ctttaaagaagcgcatcacaatgtagaacatgaaaatcggtgttacttaa
atttaggttttgccaattttgcgaaaaaccgca Coding sequence (CDS) from alignment at scaffold_242:947976..949308 >TCONS_00054470 ID=TCONS_00054470|Name=TCONS_00054470|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_242:947976..949308 (Clytia hemisphaerica)
tcaaaatctttcaaaaatcagTTCATCAGTCTGttcttcgaaattttctt
caggTCCTTCTAAGTAACGCAGACCAACCAATCCACAAATACCAAACACC
AATGCTAAAAATGTGCTGATCCAACTAACATAAAACGCCCATCCAAAAGC
ATAATAATTGTCATCTTTCTTAGCTTCCATTTCCAAAATAATTTGCTGCG
TTTTCAAAGGAACTGAACATATTAAACAAATGAAAGTTAGAAACATGATG
AAATATACATGAATATGGTTAATGTACTTCACATAAATTGCCAAGACTGA
GAATCCAATACATAAGGCTGCAGAGAGTGCTGCCAGAATCAAGAAAGTCC
TTAATAACTTTTCTTTGGTATCTCGAGCTTCATAAGGGACACATATTGTA
CCTTGTTCATTTGAAGTTTCATAACATCTTCGCCAGATACCAGAAAAGGA
TTGTAAACGTTTATTGATAAGCCAACTGTTACCAGCGATGCAAGATAAAA
TAAGAATGGTCAATGCGACACCAACAGTGATGTTAAACACATTCAAATGA
GATTTCGATATGGCGCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054470-exon-scaffold_242-1491911889:947976..949308 | TCONS_00054470-exon-scaffold_242-1491911889:947976..949308 | Clytia hemisphaerica | exon |
| TCONS_00054470-exon-scaffold_242-1510915933:947976..949308 | TCONS_00054470-exon-scaffold_242-1510915933:947976..949308 | Clytia hemisphaerica | exon |
| TCONS_00054470-exon-scaffold_242-1575043694:947976..949308 | TCONS_00054470-exon-scaffold_242-1575043694:947976..949308 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:947976..949308 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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