TCONS_00054248 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054248
Unique NameTCONS_00054248
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1160

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054248 ID=TCONS_00054248|Name=TCONS_00054248|organism=Clytia hemisphaerica|type=transcript|length=1160bp
tcagtaTGCATCGACTCGTATACCGACTGTTCTTGGGTGAAATCAAATGG
TTATTGTAATCCTTCAAGTCAGTTTTACTCATGGGCTAAACAGAATTGTA
TAAAAACCTGTGGAATTCAATGTACCCCGCCTGCATGTGTAGATAGAGAT
GCAACATATTGTGCGTCAAAAGCTACGAATTGTAATGCTGGCCGAGGGTG
GAACTATTACTTGAGATATTATTGCCCAAAAACATGCAAAACTTGCAACG
GTGGCGGAAATGGTGGAAGTGGTGGCGGTTCAGGCGGCGGCGCCACAAAA
TGTGGAATCAAAGGATCAGGTCACACAAGAATTGTTGGTGGAACCAATGC
TCGACCCGGTGATTGGCCATGGCAGGTTCAAATTGACAGGACTACAGATC
ATATGAGAGTCTGGTGTGGAGGAACGGTCATCAATGATGAATGGATCGTC
AGTGCTGCTCATTGCTTCGAAAGAGATACCAGGGCATCAAGTTACGCAAT
CTATTTAGGTGAGCATGATCTTCAAAGTGGTAGCCAACATGAACAAAAAC
TTGAGATTGCAGAGATTATTATGCATCCAAAATATCAATCACGCACATAC
GAAAAAGACATTGCACTTATCCGATTGAAAAAGAAGGCCTTATTCAACAC
ACACGTTCGCCCAGCATGTTTCCCCGATTCGTCCGTTAAATTCTATGATG
GGGAGGCGTGTTACGTGACTGGATGGGGATATCTTCGAGAAGGTGGAAGC
TCTCCAAGGATCTTACAGCAAGTGAAAGTACCACTTGTACCCAGAAGCAC
GTGCAGACAGTCATACGGACAAAATAGCATCACGGGTAACATGATTTGCG
CCGGGTACCCGCAAGGAGGAAAAGACGCCTGTCAAGGAGATTCCGGTGGT
CCGTTGGTCTGTAAAAAGCGAAACTCATCCGGTCAAGATGTTTGGTATTT
GTGGGGAGTCGTTTCATGGGGTCGAGGTTGTGCTTCTCCAAGATTATATG
GTGTATATTCCAATATGGAAACCCTAGGATCATGGGCCACCCAAACAATG
CGAAGCagatcttaaaatgtttttagttAACTTTAGAGTCATTTGTCATA
ACGTTGCAAGTATTCTTTCTTGGAATAATTATACGAATGtaccaaaaatt
taaaagtgta
Run BLAST on NCBI

protein sequence of TCONS_00054248-protein

>TCONS_00054248-protein ID=TCONS_00054248-protein|Name=TCONS_00054248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
SVCIDSYTDCSWVKSNGYCNPSSQFYSWAKQNCIKTCGIQCTPPACVDRD
ATYCASKATNCNAGRGWNYYLRYYCPKTCKTCNGGGNGGSGGGSGGGATK
CGIKGSGHTRIVGGTNARPGDWPWQVQIDRTTDHMRVWCGGTVINDEWIV
SAAHCFERDTRASSYAIYLGEHDLQSGSQHEQKLEIAEIIMHPKYQSRTY
EKDIALIRLKKKALFNTHVRPACFPDSSVKFYDGEACYVTGWGYLREGGS
SPRILQQVKVPLVPRSTCRQSYGQNSITGNMICAGYPQGGKDACQGDSGG
PLVCKKRNSSGQDVWYLWGVVSWGRGCASPRLYGVYSNMETLGSWATQTM
RSRS
Run BLAST on NCBI

transcript from alignment at scaffold_242:1103436..1108996+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054248 ID=TCONS_00054248|Name=TCONS_00054248|organism=Clytia hemisphaerica|type=transcript|length=5561bp|location=Sequence derived from alignment at scaffold_242:1103436..1108996+ (Clytia hemisphaerica)
tcagtaTGCATCGACTCGTATACCGACTGTTCTTGGGTGAAATCAAATGG
TTATTGTAATCCTTCAAGTCAGTTTTACTCATGGGCTAAACAGAATTGTA
TAAAAACCTGTGGAATTCAATGTACCCCGCCTGGTAAGAAAACAGACGTT
TTATTTGAAAcattcaacaaaaaaatttgaaaatcttgcaAAACTCAAGT
AACCTGCTAACTTATCTATCAAAGATTTCAGAATATACTTCACCAACGAT
AAGaagggaaatttttttcaaacaaatccttataattaccttatcggccc
tttttacgccgccCTAATTTAACGTCGGCCCCTTTTACCATGATTTTAGA
ATTTATAGTGGCCACAGACTTTAACTATCGGCctaaaaagttctaaaaaa
ttAGTAGAACACGTTCATTAGATGATCATTAAATTGAAGTACTTTTCCAT
GGGAATATAACGGTGTGTTTAtcctctttttccaaaaaagcaagTCTCAA
AATCGCAAAGTTTCCCAGGTCTTGGGCCGGTAATTCAGGTCTTTGGCCGC
ttttacggaaaaaaaatttgctacgCTGGCCCTTATcacgccacagccta
attttgggcttacgccaataagggccgttaataacgccaaaatttgtaaa
aatggctacttatgcTTGAAATTAGTAcataatgactaaaatttacatta
aaatgtcattttcagtattaaactgttgaaaattccatcgaaaatcactg
atttccaaatatattaaatatttcactgaagttttaaatatggcgtaaaa
caatggataattttcgtcttcgaatcacacctaaaatcctttaaattgag
aaataatgataacAAATTAACGTCACTTTTAggccaaaattgcaaaatct
tggccctttttacgccggcccttattacgccacgagcccaaaaataacgc
caataagggccggtgtaaaaagggccgataaggtaatcaGAGAAGAGTAG
TATAGTACAGAGCATTATAAATACGCAGCCTGTCTATTAAAATTGAAAcc
aaattttctatgtttactTTATCTTTTCACCCTCATAGCATGTGTAGATA
GAGATGCAACATATTGTGCGTCAAAAGCTACGAATTGTAATGCTGGCCGA
GGGTGGAACTATTACTTGAGATATTATTGCCCAAAAACATGCAAAACTTG
CAACGGTGGCGGAAATGGTGGAAGTGGTGGCGGTTCAGGCGGTAAGTTAG
TTAAAATATCTAAACTTGATGTACTTAGCCGATACACCTTTTTTATAGGA
ATGTACTCCATAAGAATATTCATTGAATTGAATAAAACATTAACATGCTA
AGAATATACTCGTGGAATTCGGCAACTGAACCTAAAAGCTATTTTGAGag
catttttaactgtaaattgcgTAAAAGAGCAGTGTAGAAATTTACAGAAT
TGTAAGAGCTGCAAGTCTTTGCTTTGCCTAAAAATTAGATTCTAAGTAGT
TCTTGATTTTATTACCcttacagtagcgtagacagaaCAGGAACATTTGC
ACAGGAGAGCAGATTGAAACGACCCTTAATTATGTTTTTATACTACGAAT
AGTTAAGTGTTTTGTCGTAAAAATATGCTCTCTTAAACGCAGATCTTTCT
TCACCCCTGTCTTCGCTACTGCACCTTTTACTCAACTATTCAGACATTGT
TTTCTTTACACTTTCCATAGGTCAAACCTTGTAAGCTTTATAGGACACTT
AAACATTTTATAAATTAAAGTAAtctgggagtttctaaacatcgaccaga
aatggcgacccggggggggggggggggtggaaaaaaaggggggggggggg
ggggggggggggggggggggataggacaaaatgggttacggggatgctcc
gctggtcagggtacctttttcaacctccaagagtcccaggtagggtcgca
aaaaacaccaaaatagaaaaatcagtccctcatagggtgcctatttttgg
aaaattcggggaaaaagtagaaaattttggaatttcagtccttTTCAgcg
tcacttttttcgcaaatttcgagtcccacgtagggtccatttttcgaacc
tcagcggagcacccccgtccgtcgacaagggtagtgcccccccccccggg
gggcgCCAAGGggtgtcccccccccccccccgggtggcGACCACAACCAG
CGttcacgaccggcgaccagataaatttggattatcgagtttatctgctc
tccccaccgtagagaatgtttaaatcaagttctcagaatactaaaaagtg
acctttgaagtaaccagtcattttcttgacaaagtgacactatttgGCAA
AATTATTGACAGGGTCGTTAAGTATATGATGTTTGTAAGCTttgttacac
caaatattttaattatgctgaatgagatgcagtatgaatagatagaactt
aTCAGTAGGAAAAAAATGGGagggccagttttagagatacgaaTTTAATC
AATTATTCCattgtctttatgctgacaaatTGACTCatctcgataaccca
aatttatctggtcgctggtcgtggtcgccggtcgtggtaggcttctgctc
atcctctagcgaaaaaagtttcttatagaaataggaagtataggtctgcg
aatcagactacggtcgtggtcgtcatttccggtcgatgtttagaaactcc
caagTAATCTACAATCTTATTTCACAGGCGGCGCCACAAAATGTGGAATC
AAAGGATCAGGTCACACAAGAATTGTTGGTGGAACCAATGCTCGACCCGG
TGATTGGCCATGGCAGGTGAAAAAGCCCTTTGAGCACCTAGTTTTCAAAG
AAGGCCTTAAGAAATCGAAACAAAACATTTCTTAATTTCTGACCCTAATC
GTTACCAGATCCCAAGTTTAATTTATTTAAAGGAGAAAACGAAGAATAAG
AAATTGATTctcatagcttcagccaggtttctagctccccccaacaaatt
AAGGTCCCCCaaacaatttagctccccccaaaaaattgtgctaggtcccc
taatACTTAGTCAGCAAGATAagctaaaacaaaaacattgttctcccaCC
CCCGTAGAgagaaatcaataaaaaatatatgcagGTActgtactgataaa
tgaaaacttgtattattattttacttgtattaatatttatgtttacaaat
cttttgctttttatatttgatttaatagtaagataagagatcttttgaaa
ttagctaAACAGCCCCCAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccc
ccccccccaaaaaaaaaaaaaagggggggggggctgaagctaTGGCTCTC
CTCGAAGACATTCTTCTAAAAGCTTGGTCAAAGATTACTAGAGATTTTAG
CAGTAGTGCAGATTGACTGAAGCTTCTACACTTACCTACAAGGCACTTTT
GTTTCTCAGGTTCAAATTGACAGGACTACAGATCATATGAGAGTCTGGTG
TGGAGGAACGGTCATCAATGATGAATGGATCGTCAGTGCTGCTCATTGCT
TCGAAAGAGATACCAGGGCATCAAGTTACGCAATCTATTTAGGTGAGAAA
CTAATGCAGCTGTTAAAATATCTTGTATTAGTATAATTCAACGAGACTTG
AATCAAAGCAAAGCAAATTGATAATTTGAACAGTTGAACATTATTGGAGA
AAAAGTTTACATCTGTGGCGCCAACGctttaattcaaaaaagtttttccg
taaTTTCTGTTTTCAAAACATCAGATCGTCACTTTCAAAATATCACCCCT
ATAAGGAAAATTTGTGCCTCTGAAATCTAAAACCTTTAAACCCGATCAAA
ACCCTCAGATGTGCCTCAGCACAGAAAGGTTAAAAACtatattttcatta
atttttatagGTGAGCATGATCTTCAAAGTGGTAGCCAACATGAACAAAA
ACTTGAGATTGCAGAGATTATTATGCATCCAAAATATCAATCACGCACAT
ACGAAAAAGACATTGCACTTATCCGATTGAAAAAGAAGGCCTTATTCAAC
ACACACGTTCGCCCAGCATGTTTCCCCGATTCGTCCGTTAAATTCTATGA
TGGGGAGGCGTGTTACGTGACTGGATGGGGATATCTTCGAGAAGGTGGAA
GCTCTCCAAGGGTAAATTCTTCAATtagaaaaatcttcagaaaacatcaa
aatcttgTTTGGTCTAAGAAATAATTTTAACTAATCGTACTAGGGGAGGG
GCTATTTCTGTGACGGGGGCGGAAACTAatgttaatagctcctgaaataa
tagagcttttagCATAAaactttctgtaaattcctTACTTTTATTTAACT
CAAAAAAGTGAGTGAATGATAATCTTAGAAAATTATGGCCACAGATCAGG
AAAACTTTGGAAAATTAATAACCAATAGAAAGCAAGGATAATATTCATAG
GAAATTAGgagttcatttttcttttaaatccaCGAAATTTAAGAGATAAC
CAGGCACCTCCCTCAAAAATACCTCACATAGTCCTTACTAAAACCTCCCA
ATTTTACTGGCTACTTCAAAATTAAggtaattgaaaaattaaagttcttt
caaaattagatcTTATTAAAATTACAATTTAAGAAAATCCCAAGCTGAAG
CACAAATTTTCTTATATGACccagaattttgaaactttatcATACTTTTG
ACTGTTATAGATCTTACAGCAAGTGAAAGTACCACTTGTACCCAGAAGCA
CGTGCAGACAGTCATACGGACAAAATAGCATCACGGGTAACATGATTTGC
GCCGGGTACCCGCAAGGAGGAAAAGACGCCTGTCAAGGAGATTCCGGTGG
TCCGTTGGTCTGTAAAAAGCGAAACTCATCCGGTCAAGATGTTTGGTATT
TGTGGGGAGTCGTTTCATGGGGTCGAGGTTGTGCTTCTCCAAGATTATAT
GGTGTATATTCCAATATGGAAACCCTAGGATCATGGGCCACCCAAACAAT
GCGAAGCagatcttaaaatgtttttagttAACTTTAGAGTCATTTGTCAT
AACGTTGCAAGTATTCTTTCTTGGAATAATTATACGAATGtaccaaaaat
ttaaaagtgta

Coding sequence (CDS) from alignment at scaffold_242:1103436..1108996+

>TCONS_00054248 ID=TCONS_00054248|Name=TCONS_00054248|organism=Clytia hemisphaerica|type=CDS|length=6390bp|location=Sequence derived from alignment at scaffold_242:1103436..1108996+ (Clytia hemisphaerica)
tcagtaTGCATCGACTCGTATACCGACTGTTCTTGGGTGAAATCAAATGG
TTATTGTAATCCTTCAAGTCAGTTTTACTCATGGGCTAAACAGAATTGTA
TAAAAACCTGTGGAATTCAATGTACCCCGCCTGCATGTGTAGATAGAGAT
GCAACATATTGTGCGTCAAAAGCTACGAATTGTAATGCTGGCCGAGGGTG
GAACTATTACTTGAGATATTATTGCCCAAAAACATGCAAAACTTGCAACG
GTGGCGGAAATGGTGGAAGTGGTGGCGGTTCAGGCGGCGGCGCCACAAAA
TGTGGAATCAAAGGATCAGGTCACACAAGAATTGTTGGTGGAACCAATGC
TCGACCCGGTGATTGGCCATGGCAGGTTCAAATTGACAGGACTACAGATC
ATATGAGAGTCTGGTGTGGAGGAACGGTCATCAATGATGAATGGATCGTC
AGTGCTGCTCATTGCTTCGAAAGAGATACCAGGGCATCAAGTTACGCAAT
CTATTTAGGTGAGCATGATCTTCAAAGTGGTAGCCAACATGAACAAAAAC
TTGAGATTGCAGAGATTATTATGCATCCAAAATATCAATCACGCACATAC
GAAAAAGACATTGCACTTATCCGATTGAAAAAGAAGGCCTTATTCAACAC
ACACGTTCGCCCAGCATGTTTCCCCGATTCGTCCGTTAAATTCTATGATG
GGGAGGCGTGTTACGTGACTGGATGGGGATATCTTCGAGAAGGTGGAAGC
TCTCCAAGGATCTTACAGCAAGTGAAAGTACCACTTGTACCCAGAAGCAC
GTGCAGACAGTCATACGGACAAAATAGCATCACGGGTAACATGATTTGCG
CCGGGTACCCGCAAGGAGGAAAAGACGCCTGTCAAGGAGATTCCGGTGGT
CCGTTGGTCTGTAAAAAGCGAAACTCATCCGGTCAAGATGTTTGGTATTT
GTGGGGAGTCGTTTCATGGGGTCGAGGTTGTGCTTCTCCAAGATTATATG
GTGTATATTCCAATATGGAAACCCTAGGATCATGGGCCACCCAAACAATG
CGAAGCagatcttaatcagtaTGCATCGACTCGTATACCGACTGTTCTTG
GGTGAAATCAAATGGTTATTGTAATCCTTCAAGTCAGTTTTACTCATGGG
CTAAACAGAATTGTATAAAAACCTGTGGAATTCAATGTACCCCGCCTGCA
TGTGTAGATAGAGATGCAACATATTGTGCGTCAAAAGCTACGAATTGTAA
TGCTGGCCGAGGGTGGAACTATTACTTGAGATATTATTGCCCAAAAACAT
GCAAAACTTGCAACGGTGGCGGAAATGGTGGAAGTGGTGGCGGTTCAGGC
GGCGGCGCCACAAAATGTGGAATCAAAGGATCAGGTCACACAAGAATTGT
TGGTGGAACCAATGCTCGACCCGGTGATTGGCCATGGCAGGTTCAAATTG
ACAGGACTACAGATCATATGAGAGTCTGGTGTGGAGGAACGGTCATCAAT
GATGAATGGATCGTCAGTGCTGCTCATTGCTTCGAAAGAGATACCAGGGC
ATCAAGTTACGCAATCTATTTAGGTGAGCATGATCTTCAAAGTGGTAGCC
AACATGAACAAAAACTTGAGATTGCAGAGATTATTATGCATCCAAAATAT
CAATCACGCACATACGAAAAAGACATTGCACTTATCCGATTGAAAAAGAA
GGCCTTATTCAACACACACGTTCGCCCAGCATGTTTCCCCGATTCGTCCG
TTAAATTCTATGATGGGGAGGCGTGTTACGTGACTGGATGGGGATATCTT
CGAGAAGGTGGAAGCTCTCCAAGGATCTTACAGCAAGTGAAAGTACCACT
TGTACCCAGAAGCACGTGCAGACAGTCATACGGACAAAATAGCATCACGG
GTAACATGATTTGCGCCGGGTACCCGCAAGGAGGAAAAGACGCCTGTCAA
GGAGATTCCGGTGGTCCGTTGGTCTGTAAAAAGCGAAACTCATCCGGTCA
AGATGTTTGGTATTTGTGGGGAGTCGTTTCATGGGGTCGAGGTTGTGCTT
CTCCAAGATTATATGGTGTATATTCCAATATGGAAACCCTAGGATCATGG
GCCACCCAAACAATGCGAAGCagatcttaatcagtaTGCATCGACTCGTA
TACCGACTGTTCTTGGGTGAAATCAAATGGTTATTGTAATCCTTCAAGTC
AGTTTTACTCATGGGCTAAACAGAATTGTATAAAAACCTGTGGAATTCAA
TGTACCCCGCCTGCATGTGTAGATAGAGATGCAACATATTGTGCGTCAAA
AGCTACGAATTGTAATGCTGGCCGAGGGTGGAACTATTACTTGAGATATT
ATTGCCCAAAAACATGCAAAACTTGCAACGGTGGCGGAAATGGTGGAAGT
GGTGGCGGTTCAGGCGGCGGCGCCACAAAATGTGGAATCAAAGGATCAGG
TCACACAAGAATTGTTGGTGGAACCAATGCTCGACCCGGTGATTGGCCAT
GGCAGGTTCAAATTGACAGGACTACAGATCATATGAGAGTCTGGTGTGGA
GGAACGGTCATCAATGATGAATGGATCGTCAGTGCTGCTCATTGCTTCGA
AAGAGATACCAGGGCATCAAGTTACGCAATCTATTTAGGTGAGCATGATC
TTCAAAGTGGTAGCCAACATGAACAAAAACTTGAGATTGCAGAGATTATT
ATGCATCCAAAATATCAATCACGCACATACGAAAAAGACATTGCACTTAT
CCGATTGAAAAAGAAGGCCTTATTCAACACACACGTTCGCCCAGCATGTT
TCCCCGATTCGTCCGTTAAATTCTATGATGGGGAGGCGTGTTACGTGACT
GGATGGGGATATCTTCGAGAAGGTGGAAGCTCTCCAAGGATCTTACAGCA
AGTGAAAGTACCACTTGTACCCAGAAGCACGTGCAGACAGTCATACGGAC
AAAATAGCATCACGGGTAACATGATTTGCGCCGGGTACCCGCAAGGAGGA
AAAGACGCCTGTCAAGGAGATTCCGGTGGTCCGTTGGTCTGTAAAAAGCG
AAACTCATCCGGTCAAGATGTTTGGTATTTGTGGGGAGTCGTTTCATGGG
GTCGAGGTTGTGCTTCTCCAAGATTATATGGTGTATATTCCAATATGGAA
ACCCTAGGATCATGGGCCACCCAAACAATGCGAAGCagatcttaatcagt
aTGCATCGACTCGTATACCGACTGTTCTTGGGTGAAATCAAATGGTTATT
GTAATCCTTCAAGTCAGTTTTACTCATGGGCTAAACAGAATTGTATAAAA
ACCTGTGGAATTCAATGTACCCCGCCTGCATGTGTAGATAGAGATGCAAC
ATATTGTGCGTCAAAAGCTACGAATTGTAATGCTGGCCGAGGGTGGAACT
ATTACTTGAGATATTATTGCCCAAAAACATGCAAAACTTGCAACGGTGGC
GGAAATGGTGGAAGTGGTGGCGGTTCAGGCGGCGGCGCCACAAAATGTGG
AATCAAAGGATCAGGTCACACAAGAATTGTTGGTGGAACCAATGCTCGAC
CCGGTGATTGGCCATGGCAGGTTCAAATTGACAGGACTACAGATCATATG
AGAGTCTGGTGTGGAGGAACGGTCATCAATGATGAATGGATCGTCAGTGC
TGCTCATTGCTTCGAAAGAGATACCAGGGCATCAAGTTACGCAATCTATT
TAGGTGAGCATGATCTTCAAAGTGGTAGCCAACATGAACAAAAACTTGAG
ATTGCAGAGATTATTATGCATCCAAAATATCAATCACGCACATACGAAAA
AGACATTGCACTTATCCGATTGAAAAAGAAGGCCTTATTCAACACACACG
TTCGCCCAGCATGTTTCCCCGATTCGTCCGTTAAATTCTATGATGGGGAG
GCGTGTTACGTGACTGGATGGGGATATCTTCGAGAAGGTGGAAGCTCTCC
AAGGATCTTACAGCAAGTGAAAGTACCACTTGTACCCAGAAGCACGTGCA
GACAGTCATACGGACAAAATAGCATCACGGGTAACATGATTTGCGCCGGG
TACCCGCAAGGAGGAAAAGACGCCTGTCAAGGAGATTCCGGTGGTCCGTT
GGTCTGTAAAAAGCGAAACTCATCCGGTCAAGATGTTTGGTATTTGTGGG
GAGTCGTTTCATGGGGTCGAGGTTGTGCTTCTCCAAGATTATATGGTGTA
TATTCCAATATGGAAACCCTAGGATCATGGGCCACCCAAACAATGCGAAG
CagatcttaatcagtaTGCATCGACTCGTATACCGACTGTTCTTGGGTGA
AATCAAATGGTTATTGTAATCCTTCAAGTCAGTTTTACTCATGGGCTAAA
CAGAATTGTATAAAAACCTGTGGAATTCAATGTACCCCGCCTGCATGTGT
AGATAGAGATGCAACATATTGTGCGTCAAAAGCTACGAATTGTAATGCTG
GCCGAGGGTGGAACTATTACTTGAGATATTATTGCCCAAAAACATGCAAA
ACTTGCAACGGTGGCGGAAATGGTGGAAGTGGTGGCGGTTCAGGCGGCGG
CGCCACAAAATGTGGAATCAAAGGATCAGGTCACACAAGAATTGTTGGTG
GAACCAATGCTCGACCCGGTGATTGGCCATGGCAGGTTCAAATTGACAGG
ACTACAGATCATATGAGAGTCTGGTGTGGAGGAACGGTCATCAATGATGA
ATGGATCGTCAGTGCTGCTCATTGCTTCGAAAGAGATACCAGGGCATCAA
GTTACGCAATCTATTTAGGTGAGCATGATCTTCAAAGTGGTAGCCAACAT
GAACAAAAACTTGAGATTGCAGAGATTATTATGCATCCAAAATATCAATC
ACGCACATACGAAAAAGACATTGCACTTATCCGATTGAAAAAGAAGGCCT
TATTCAACACACACGTTCGCCCAGCATGTTTCCCCGATTCGTCCGTTAAA
TTCTATGATGGGGAGGCGTGTTACGTGACTGGATGGGGATATCTTCGAGA
AGGTGGAAGCTCTCCAAGGATCTTACAGCAAGTGAAAGTACCACTTGTAC
CCAGAAGCACGTGCAGACAGTCATACGGACAAAATAGCATCACGGGTAAC
ATGATTTGCGCCGGGTACCCGCAAGGAGGAAAAGACGCCTGTCAAGGAGA
TTCCGGTGGTCCGTTGGTCTGTAAAAAGCGAAACTCATCCGGTCAAGATG
TTTGGTATTTGTGGGGAGTCGTTTCATGGGGTCGAGGTTGTGCTTCTCCA
AGATTATATGGTGTATATTCCAATATGGAAACCCTAGGATCATGGGCCAC
CCAAACAATGCGAAGCagatcttaatcagtaTGCATCGACTCGTATACCG
ACTGTTCTTGGGTGAAATCAAATGGTTATTGTAATCCTTCAAGTCAGTTT
TACTCATGGGCTAAACAGAATTGTATAAAAACCTGTGGAATTCAATGTAC
CCCGCCTGCATGTGTAGATAGAGATGCAACATATTGTGCGTCAAAAGCTA
CGAATTGTAATGCTGGCCGAGGGTGGAACTATTACTTGAGATATTATTGC
CCAAAAACATGCAAAACTTGCAACGGTGGCGGAAATGGTGGAAGTGGTGG
CGGTTCAGGCGGCGGCGCCACAAAATGTGGAATCAAAGGATCAGGTCACA
CAAGAATTGTTGGTGGAACCAATGCTCGACCCGGTGATTGGCCATGGCAG
GTTCAAATTGACAGGACTACAGATCATATGAGAGTCTGGTGTGGAGGAAC
GGTCATCAATGATGAATGGATCGTCAGTGCTGCTCATTGCTTCGAAAGAG
ATACCAGGGCATCAAGTTACGCAATCTATTTAGGTGAGCATGATCTTCAA
AGTGGTAGCCAACATGAACAAAAACTTGAGATTGCAGAGATTATTATGCA
TCCAAAATATCAATCACGCACATACGAAAAAGACATTGCACTTATCCGAT
TGAAAAAGAAGGCCTTATTCAACACACACGTTCGCCCAGCATGTTTCCCC
GATTCGTCCGTTAAATTCTATGATGGGGAGGCGTGTTACGTGACTGGATG
GGGATATCTTCGAGAAGGTGGAAGCTCTCCAAGGATCTTACAGCAAGTGA
AAGTACCACTTGTACCCAGAAGCACGTGCAGACAGTCATACGGACAAAAT
AGCATCACGGGTAACATGATTTGCGCCGGGTACCCGCAAGGAGGAAAAGA
CGCCTGTCAAGGAGATTCCGGTGGTCCGTTGGTCTGTAAAAAGCGAAACT
CATCCGGTCAAGATGTTTGGTATTTGTGGGGAGTCGTTTCATGGGGTCGA
GGTTGTGCTTCTCCAAGATTATATGGTGTATATTCCAATATGGAAACCCT
AGGATCATGGGCCACCCAAACAATGCGAAGCagatcttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034221XLOC_034221Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054248-proteinTCONS_00054248-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054248-exon-scaffold_242-1491911889:1103436..1103568TCONS_00054248-exon-scaffold_242-1491911889:1103436..1103568Clytia hemisphaericaexon
TCONS_00054248-exon-scaffold_242-1510915933:1103436..1103568TCONS_00054248-exon-scaffold_242-1510915933:1103436..1103568Clytia hemisphaericaexon
TCONS_00054248-exon-scaffold_242-1575043694:1103436..1103568TCONS_00054248-exon-scaffold_242-1575043694:1103436..1103568Clytia hemisphaericaexon
TCONS_00054248-exon-scaffold_242-1491911889:1104524..1104676TCONS_00054248-exon-scaffold_242-1491911889:1104524..1104676Clytia hemisphaericaexon
TCONS_00054248-exon-scaffold_242-1510915933:1104524..1104676TCONS_00054248-exon-scaffold_242-1510915933:1104524..1104676Clytia hemisphaericaexon
TCONS_00054248-exon-scaffold_242-1575043694:1104524..1104676TCONS_00054248-exon-scaffold_242-1575043694:1104524..1104676Clytia hemisphaericaexon
TCONS_00054248-exon-scaffold_242-1491911889:1106163..1106251TCONS_00054248-exon-scaffold_242-1491911889:1106163..1106251Clytia hemisphaericaexon
TCONS_00054248-exon-scaffold_242-1510915933:1106163..1106251TCONS_00054248-exon-scaffold_242-1510915933:1106163..1106251Clytia hemisphaericaexon
TCONS_00054248-exon-scaffold_242-1575043694:1106163..1106251TCONS_00054248-exon-scaffold_242-1575043694:1106163..1106251Clytia hemisphaericaexon
TCONS_00054248-exon-scaffold_242-1491911889:1107345..1107477TCONS_00054248-exon-scaffold_242-1491911889:1107345..1107477Clytia hemisphaericaexon
TCONS_00054248-exon-scaffold_242-1510915933:1107345..1107477TCONS_00054248-exon-scaffold_242-1510915933:1107345..1107477Clytia hemisphaericaexon
TCONS_00054248-exon-scaffold_242-1575043694:1107345..1107477TCONS_00054248-exon-scaffold_242-1575043694:1107345..1107477Clytia hemisphaericaexon
TCONS_00054248-exon-scaffold_242-1491911889:1107796..1108046TCONS_00054248-exon-scaffold_242-1491911889:1107796..1108046Clytia hemisphaericaexon
TCONS_00054248-exon-scaffold_242-1510915933:1107796..1108046TCONS_00054248-exon-scaffold_242-1510915933:1107796..1108046Clytia hemisphaericaexon
TCONS_00054248-exon-scaffold_242-1575043694:1107796..1108046TCONS_00054248-exon-scaffold_242-1575043694:1107796..1108046Clytia hemisphaericaexon
TCONS_00054248-exon-scaffold_242-1491911889:1108596..1108996TCONS_00054248-exon-scaffold_242-1491911889:1108596..1108996Clytia hemisphaericaexon
TCONS_00054248-exon-scaffold_242-1510915933:1108596..1108996TCONS_00054248-exon-scaffold_242-1510915933:1108596..1108996Clytia hemisphaericaexon
TCONS_00054248-exon-scaffold_242-1575043694:1108596..1108996TCONS_00054248-exon-scaffold_242-1575043694:1108596..1108996Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1103436..1108996 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0413247	0.0503089	0	0	0.0898036	0	0.0389396	0	0	111.103	92.3465	0.0211834	0.0909322	15.0108	23.1932	613.887	575.453	59.1897	66.3972	40.3359	48.0264	53.5916	54.7641	4.39921	10.5909	0	0.0421866
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR003582ShKT_dom
IPR001254Trypsin_dom
IPR018114TRYPSIN_HIS
IPR033116TRYPSIN_SER
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
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BLAST of TCONS_00054248 vs. Swiss-Prot (Human)
Match: PRSS8 (Prostasin OS=Homo sapiens GN=PRSS8 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.605e-58
Identity = 99/247 (40.08%), Postives = 146/247 (59.11%), Query Frame = 1 
Query:  322 HTRIVGGTNARPGDWPWQVQIDRTTDHMRVWCGGTVINDEWIVSAAHCFERDTRASSYAIYLGEHDLQSGSQHEQKLEIAEIIMHPKYQSRTYEKDIALIRLKKKALFNTHVRPACFPDSSVKFYDGEACYVTGWGYLREGGS--SPRILQQVKVPLVPRSTCRQSYGQNS-------ITGNMICAGYPQGGKDACQGDSGGPLVCKKRNSSGQDVWYLWGVVSWGRGCASPRLYGVYSNMETLGSW 1035
              RI GG++A  G WPWQV I     H+   CGG++++++W++SAAHCF  +    +Y + LG H L S S+  +   + +II HP Y     + DIAL++L +   F+ ++RP C P ++  F +G  C VTGWG++    S  +P+ LQQ++VPL+ R TC   Y  ++       +  +M+CAGY +GGKDACQGDSGGPL C       + +WYL G+VSWG  C +    GVY+   +  SW
Sbjct:   42 QARITGGSSAVAGQWPWQVSITYEGVHV---CGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPICLPAANASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNCLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPV-----EGLWYLTGIVSWGDACGARNRPGVYTLASSYASW 280
The following BLAST results are available for this feature:
BLAST of TCONS_00054248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRSS82.605e-5840.08Prostasin OS=Homo sapiens GN=PRSS8 PE=1 SV=1[more]
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