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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054485 ID=TCONS_00054485|Name=TCONS_00054485|organism=Clytia hemisphaerica|type=transcript|length=1548bp
ATGGAAATGAGATTTTCGGGTATCTATCTCAACGGAGACGGTTCTTTAGT
CGTTCTCTTGAGTGAGACTAAGTCCATCCAGGGGGATAAAAGGGTGTCTT
ATAACCTAAAAAAGGATGTTTGTCGTTGGAGAAAAAACAGTTATAATCTT
TCATAATTATCAACATatgaaaatattacaaaatttctACGCTTCGGGCA
TAATAACTGACACATTATCCTACTTTCTCTTAAATTCTTAGCTCCGGGCT
AATAAATACTGCATATGCCACACAGATCAATGAAAAATGACGCTCGCTTT
GATGGTAATCGAGAAATGAAGAGTTGCCTTCAATAATAAGAAAACtaaga
tgttcaattttttaGAAACCTGATTGATCCTGCCCTTTCGATCAAATTAC
TTTCTTATGATAGTAATTTTATCTCATCCTTGACATTTGAGCTGTACAAC
AAAGTGATAAGAGAGTACCATGTCCGTTATAAGTTTCCAGTCTCTTATCT
CAGTTTCTTTCGGTAGATGAAGTTTATTTGTCATTGAGCGTATTTTGTCT
GGTTTTATAAAGTTAACTCCATTCATCAGTCTATACGAGAAATCTCTGAA
TGTACAGCATGGTCGCATACCTCAACAGTTCCACCAATTCCTAATCACAC
CACTGCcacacagccccggtggagatccaaatggaaattaaaattctatt
tttccaaaaagtaacaaaatccAGTGGGGACGGTTTTtcagtgcaatttt
ttacattgaatttcgaatgggaattaaattgaaataaatttccGGGTGGG
GCTCAAATTGTAgtcttccaaaaaaaaaaaaaaagccacCACCGATGGTT
GGGGGGTCCtagggtctgtgacacagggtgtCTAATTCTACATCTATACC
ATTCGTTAGTAGCCATGCTACGCGAGCATTGATTAGAAAGCCAACTTCCC
ACCGCTGACGAAATTTCGGCTTAATTTTCCGGTGGTCGCAGGGTCTGTGA
ATCAGGTTGTCTAAGTCTACATCTATAAACTATCCGTTAGCAGCCATCTA
TCATATTTCTACGTGAGCAGCGATTATCCGTAACTTCGTCAAGCCAAGTG
TAAACTAAAATATTAAAGATGGCCAAAGCAGCGACACGGTAGATTGCTTT
CAAGACAAGCGACGATGAGAGATGACATAAATAGAGCAACCAAAAGCAAG
ATAAAGCCATGATTCGAAAGTATCGAATACAAGGGTTCTCTTCTTTATCA
TTCTGTTGCGGATCTTTGCGTGTGAACAAATCATCGCCGTTGCTTTTGAA
CAAAATTCCCAACATTTTTTGTTGATATAACTGTATTACCAGACTGCTAC
GAACTTTGATATCGTCTGAAAGTACATTTTGTCTATAGACCAGCTTTCAC
ACAATATTTGCTGTTTTGGTTTTTAatgtgaaaatatatttttttcgatc
tctataaaatatgagaaaaatgaGATATGCAGACGGTTATGTAACAACTC
TCTACAATGTTAAGACGTAAAGGTATTTTCGCAAAGCTACAAatcttt Run BLAST on NCBI transcript from alignment at scaffold_242:1237696..1239243 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054485 ID=TCONS_00054485|Name=TCONS_00054485|organism=Clytia hemisphaerica|type=transcript|length=1548bp|location=Sequence derived from alignment at scaffold_242:1237696..1239243 (Clytia hemisphaerica)
aaagatTTGTAGCTTTGCGAAAATACCTTTACGTCTTAACATTGTAGAGA
GTTGTTACATAACCGTCTGCATATCtcatttttctcatattttatagaga
tcgaaaaaaatatattttcacatTAAAAACCAAAACAGCAAATATTGTGT
GAAAGCTGGTCTATAGACAAAATGTACTTTCAGACGATATCAAAGTTCGT
AGCAGTCTGGTAATACAGTTATATCAACAAAAAATGTTGGGAATTTTGTT
CAAAAGCAACGGCGATGATTTGTTCACACGCAAAGATCCGCAACAGAATG
ATAAAGAAGAGAACCCTTGTATTCGATACTTTCGAATCATGGCTTTATCT
TGCTTTTGGTTGCTCTATTTATGTCATCTCTCATCGTCGCTTGTCTTGAA
AGCAATCTACCGTGTCGCTGCTTTGGCCATCTTTAATATTTTAGTTTACA
CTTGGCTTGACGAAGTTACGGATAATCGCTGCTCACGTAGAAATATGATA
GATGGCTGCTAACGGATAGTTTATAGATGTAGACTTAGACAACCTGATTC
ACAGACCCTGCGACCACCGGAAAATTAAGCCGAAATTTCGTCAGCGGTGG
GAAGTTGGCTTTCTAATCAATGCTCGCGTAGCATGGCTACTAACGAATGG
TATAGATGTAGAATTAGacaccctgtgtcacagaccctaGGACCCCCCAA
CCATCGGTGgtggctttttttttttttttggaagacTACAATTTGAGCCC
CACCCggaaatttatttcaatttaattcccattcgaaattcaatgtaaaa
aattgcactgaAAAACCGTCCCCACTggattttgttactttttggaaaaa
tagaattttaatttccatttggatctccaccggggctgtgtgGCAGTGGT
GTGATTAGGAATTGGTGGAACTGTTGAGGTATGCGACCATGCTGTACATT
CAGAGATTTCTCGTATAGACTGATGAATGGAGTTAACTTTATAAAACCAG
ACAAAATACGCTCAATGACAAATAAACTTCATCTACCGAAAGAAACTGAG
ATAAGAGACTGGAAACTTATAACGGACATGGTACTCTCTTATCACTTTGT
TGTACAGCTCAAATGTCAAGGATGAGATAAAATTACTATCATAAGAAAGT
AATTTGATCGAAAGGGCAGGATCAATCAGGTTTCtaaaaaattgaacatc
ttaGTTTTCTTATTATTGAAGGCAACTCTTCATTTCTCGATTACCATCAA
AGCGAGCGTCATTTTTCATTGATCTGTGTGGCATATGCAGTATTTATTAG
CCCGGAGCTAAGAATTTAAGAGAAAGTAGGATAATGTGTCAGTTATTATG
CCCGAAGCGTagaaattttgtaatattttcatATGTTGATAATTATGAAA
GATTATAACTGTTTTTTCTCCAACGACAAACATCCTTTTTTAGGTTATAA
GACACCCTTTTATCCCCCTGGATGGACTTAGTCTCACTCAAGAGAACGAC
TAAAGAACCGTCTCCGTTGAGATAGATACCCGAAAATCTCATTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054485-exon-scaffold_242-1491911889:1237696..1239243 | TCONS_00054485-exon-scaffold_242-1491911889:1237696..1239243 | Clytia hemisphaerica | exon |
| TCONS_00054485-exon-scaffold_242-1510915933:1237696..1239243 | TCONS_00054485-exon-scaffold_242-1510915933:1237696..1239243 | Clytia hemisphaerica | exon |
| TCONS_00054485-exon-scaffold_242-1575043694:1237696..1239243 | TCONS_00054485-exon-scaffold_242-1575043694:1237696..1239243 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1237696..1239243 . |
Blast
The following BLAST results are available for this feature:
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