TCONS_00054488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054488
Unique NameTCONS_00054488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length933

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054488 ID=TCONS_00054488|Name=TCONS_00054488|organism=Clytia hemisphaerica|type=transcript|length=933bp
tttgcagtggagacaaaaaatACTACAGCCTTTGATAGAATTGAATCATA
TAGCAGTTTCGTGCTCGTTAAAAAATAttccggagtggaatattatcata
aCTATGctataattataattttcacACGAGCGactctttgatcttagaac
atcagcaatgtgaaaaaatatttcgaaaaaaatattcttcatggTTTATA
GACGAAACCATTAAAACATGTTCATACTGTTACTGTTAACAGAGTCATTA
AAGTATTCTCTGAATGCTCTGAAAAAGGTCTCATAACTGTTTATAACTGT
CAATTATGATGATAAATTTGCCATCTGTTTTGATATGAATGAAAATAGTT
GTAGTGACGTTAATTGCTTATTGATTGGAAAGTAATTATCGCATGTGGTG
ccataattatttttttaaatgaaagtaattattGAATTGGTATGCTACTT
TTTTTTAGCTGGTAAATTATGCTTACTAAAACCaatctaatgtttttttt
atttgaagaagTTTTTCAGGCATTACATCAAATAAAACGCCTTCATGTTT
TTAACCCGGATAAAGTGCAGTACGAATCCTTTCCATttgaacaaaaaaga
aatcccttatgaaaaaatgagatgaaaaattataaaactaaTCTATCGAC
TATTCCATCAATAGAACACATAGAATGGAACTTTCTTGAATTAATAAAGA
AATGATCAGCTTTCACAATTCCTTAGCCTTGATTATGaatctctttttta
ttttctttaaagagaGTATCATGGTATTGTGATACAAACTGTACTGCTGC
ATTAGCATAGCTTGTTCTTTACAATTTGTGCAGTCATTGAAAAATCAGGT
CGTACGattatttaattaaaaaaaaacgatggACGAAAATTCTTTTGACT
AGTAACATTACGCAAGTAAAACTTTTTATGGAA
Run BLAST on NCBI

transcript from alignment at scaffold_242:1330093..1331025

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054488 ID=TCONS_00054488|Name=TCONS_00054488|organism=Clytia hemisphaerica|type=transcript|length=933bp|location=Sequence derived from alignment at scaffold_242:1330093..1331025 (Clytia hemisphaerica)
TTCCATAAAAAGTTTTACTTGCGTAATGTTACTAGTCAAAAGAATTTTCG TccatcgtttttttttaattaaataatCGTACGACCTGATTTTTCAATGA CTGCACAAATTGTAAAGAACAAGCTATGCTAATGCAGCAGTACAGTTTGT ATCACAATACCATGATACtctctttaaagaaaataaaaaagagattCATA ATCAAGGCTAAGGAATTGTGAAAGCTGATCATTTCTTTATTAATTCAAGA AAGTTCCATTCTATGTGTTCTATTGATGGAATAGTCGATAGAttagtttt ataatttttcatctcattttttcataagggatttcttttttgttcaaATG GAAAGGATTCGTACTGCACTTTATCCGGGTTAAAAACATGAAGGCGTTTT ATTTGATGTAATGCCTGAAAAActtcttcaaataaaaaaaacattagatt GGTTTTAGTAAGCATAATTTACCAGCTAAAAAAAAGTAGCATACCAATTC aataattactttcatttaaaaaaataattatggCACCACATGCGATAATT ACTTTCCAATCAATAAGCAATTAACGTCACTACAACTATTTTCATTCATA TCAAAACAGATGGCAAATTTATCATCATAATTGACAGTTATAAACAGTTA TGAGACCTTTTTCAGAGCATTCAGAGAATACTTTAATGACTCTGTTAACA GTAACAGTATGAACATGTTTTAATGGTTTCGTCTATAAAccatgaagaat atttttttcgaaatattttttcacattgctgatgttctaagatcaaagag tCGCTCGTgtgaaaattataattatagCATAGttatgataatattccact ccggaaTATTTTTTAACGAGCACGAAACTGCTATATGATTCAATTCTATC AAAGGCTGTAGTattttttgtctccactgcaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034351XLOC_034351Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054488-exon-scaffold_242-1491911889:1330093..1331025TCONS_00054488-exon-scaffold_242-1491911889:1330093..1331025Clytia hemisphaericaexon
TCONS_00054488-exon-scaffold_242-1510915933:1330093..1331025TCONS_00054488-exon-scaffold_242-1510915933:1330093..1331025Clytia hemisphaericaexon
TCONS_00054488-exon-scaffold_242-1575043694:1330093..1331025TCONS_00054488-exon-scaffold_242-1575043694:1330093..1331025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1330093..1331025 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0980048 0.0955701 0.665796 1.13991 0 0.104439 0 0 0.289054 0.0511485 0 0.522165 0.16295 0.60921 0.278252 0.328468 0.18393 0 0.0520906 0.109018 1.18446 1.4559 0.11237 0.306483 0.0526117 0.140864 0.537536 0.430255 0.163167 0.664964
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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