TCONS_00054405 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054405
Unique NameTCONS_00054405
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054405 ID=TCONS_00054405|Name=TCONS_00054405|organism=Clytia hemisphaerica|type=transcript|length=801bp
AGGACCAAAAACCCACTCATAATAACACTGACAAATGATATCTGTAGGGC
CAACATGACAGTTTTCATAGGTAGATATAAATAGCAAACTAGAAGTGCTA
TGAAATAAGTTAAAGCTATGGTCAATGTGACACCAACAATGATAAAGAAA
ACTTTAGTAGTGAATTTTTCTTTGTAGAAAAAGGGTTTCTTGATGGCTAA
CAAGCGGTCCAGTGTCACAGCCATTCGATTGATTAAAGATAAAATCATAG
ACGTCACAACGACAATATAGAAAATCACCTCCTCATCCATCAGTACATGA
GTTAGTTGTAAATTCGCTCTTTGCTCATGATTATGGATGTGAAATAGCGC
AAGTGCTGCATACCCGACCATTGAAAATGAAGCAAAGCAATTTACCATGA
AAAGGTTCACCAAAAATTTATTCGAAATCCGacgtaatagacctttttga
tGGATTATGACAAAAATAGCGACGAGAGTTAATAGAGTTCCAATGCTAGG
CTGGATTGTCATAACAACGAAATGGGTGAGGTTTGACGTGTCCCCGTTGA
AACTTTTGTTATGGTGGCTCATTGTTgtattgtttttgttgaattGTTAT
ACATTGTTTTGATATATTGTCCAATTGTTGCCAACAGTAATGTTGTTGGT
ACTTTGCATCGTTTTTATCAtgattctattttatttttataatttcacTA
TTATATAAGAATTTTTAGGGGTCTGGTAAAGCgagagatcatattttgta
caattttattataagaaaggTTTTCTCTTCGTTTCCAATACACAAGAACT
T
Run BLAST on NCBI

transcript from alignment at scaffold_242:1430597..1431397-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054405 ID=TCONS_00054405|Name=TCONS_00054405|organism=Clytia hemisphaerica|type=transcript|length=801bp|location=Sequence derived from alignment at scaffold_242:1430597..1431397- (Clytia hemisphaerica)
AGGACCAAAAACCCACTCATAATAACACTGACAAATGATATCTGTAGGGC
CAACATGACAGTTTTCATAGGTAGATATAAATAGCAAACTAGAAGTGCTA
TGAAATAAGTTAAAGCTATGGTCAATGTGACACCAACAATGATAAAGAAA
ACTTTAGTAGTGAATTTTTCTTTGTAGAAAAAGGGTTTCTTGATGGCTAA
CAAGCGGTCCAGTGTCACAGCCATTCGATTGATTAAAGATAAAATCATAG
ACGTCACAACGACAATATAGAAAATCACCTCCTCATCCATCAGTACATGA
GTTAGTTGTAAATTCGCTCTTTGCTCATGATTATGGATGTGAAATAGCGC
AAGTGCTGCATACCCGACCATTGAAAATGAAGCAAAGCAATTTACCATGA
AAAGGTTCACCAAAAATTTATTCGAAATCCGACGTAATAGACCTTTTTGA
TGGATTATGACAAAAATAGCGACGAGAGTTAATAGAGTTCCAATGCTAGG
CTGGATTGTCATAACAACGAAATGGGTGAGGTTTGACGTGTCCCCGTTGA
AACTTTTGTTATGGTGGCTCATTGTTGTATTGTTTTTGTTGAATTGTTAT
ACATTGTTTTGATATATTGTCCAATTGTTGCCAACAGTAATGTTGTTGGT
ACTTTGCATCGTTTTTATCATGATTCTATTTTATTTTTATAATTTCACTA
TTATATAAGAATTTTTAGGGGTCTGGTAAAGCGAGAGATCATATTTTGTA
CAATTTTATTATAAGAAAGGTTTTCTCTTCGTTTCCAATACACAAGAACT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034295XLOC_034295Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054405-exon-scaffold_242-1575043694:1430597..1431397TCONS_00054405-exon-scaffold_242-1575043694:1430597..1431397Clytia hemisphaericaexon
TCONS_00054405-exon-scaffold_242-1510915933:1430597..1431397TCONS_00054405-exon-scaffold_242-1510915933:1430597..1431397Clytia hemisphaericaexon
TCONS_00054405-exon-scaffold_242-1491911889:1430597..1431397TCONS_00054405-exon-scaffold_242-1491911889:1430597..1431397Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1430597..1431397 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.329853	0.239743	0.427219	0	0	0	0	0	0.234287	0	0	0.626345	0.0652896	0	0.2961	0	0	0	0	0	0.237415	0	0.237117	0.284705	0	0	0.160284	0	0	0.10742
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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