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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054406 ID=TCONS_00054406|Name=TCONS_00054406|organism=Clytia hemisphaerica|type=transcript|length=555bp
CCAGCATTCAATAGAACCGATCACTGGGTCAGCAATCGAAGTTGTCAACC
GTTTACAACTCAATACATATCTGACTCCGGCAATGTTGTCTTCACCACGC
ATGAAACCATACAACGTCAGTTATGTTGAACACAATACAACTGGTGTAAC
CAAACCTTTCCCAATATTGTGGATGGAAACACATGCTTTTGCTACAGCTA
AGGAATTAGCGGCTATGGATAAGCTATTAAGTGCAGTCAGAGCAAGTTGT
ATGGCTATTGTTATTGGTCCTTTGATTGGAGTGATTATCTTCTTAATTGC
TGGTTATTGCTATTGGAAACGAGTAAAACGAGGCTCGTCTGTCGACGCAA
GTGAGGTTGGCAAAAGTACGACTTCGATGTAAATACGCACAATCATGCTT
TCTTAGCTTTTATTTGGTTGACTGGTAATGTTATTTTAAGCAAAtcagtt
tttttggatttttgaacgATTCGAAAATTTGTTTTCGAGACACCCCGAGA
TTCGTCGAAGCTTCTACCATAGCATGACTTAACATTCATTCCCGGGATAA
AACAT Run BLAST on NCBI protein sequence of TCONS_00054406-protein >TCONS_00054406-protein ID=TCONS_00054406-protein|Name=TCONS_00054406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
QHSIEPITGSAIEVVNRLQLNTYLTPAMLSSPRMKPYNVSYVEHNTTGVT
KPFPILWMETHAFATAKELAAMDKLLSAVRASCMAIVIGPLIGVIIFLIA
GYCYWKRVKRGSSVDASEVGKSTTSM Run BLAST on NCBI transcript from alignment at scaffold_242:1444181..1445078- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054406 ID=TCONS_00054406|Name=TCONS_00054406|organism=Clytia hemisphaerica|type=transcript|length=898bp|location=Sequence derived from alignment at scaffold_242:1444181..1445078- (Clytia hemisphaerica)
CCAGCATTCAATAGAACCGATCACTGGGTCAGCAATCGAAGTTGTCAACC
GTTTACAACTCAATACATATCTGACTCCGGCAATGTTGTCTTCACCACGC
ATGAAACCATACAACGTCAGTTATGTTGAACACAATACAACTGGTGTAAC
CAAACCTTTCCCAATATTGTGGATGGAAACACATGCTTTTGCTACAGCTA
AGGAATTAGCGGCTATGGATAAGGTAAGTGTTATATAACTTATGACAGAT
AGGTATGTGTAGCTCAAATATCTAGAGGCTAGGCCTTTTTTCTTAATTCA
AACTTAAATATTCCATCCCAATCGGAAATTATACCGATTCCGATTTTGAG
GGATCTCAGGTGGGATGAGACGGAATTTTAAGGGGTCTAAAAACAAACGT
TATCTAGAAGACAATCGACAGAAATAAACTTTTGAGTCATAATTGTATCC
AATCAATTGCTTAATTGACACCAATAATTAGCTTCTTTTATGAAACAGTT
TAGCACTTTACGAAATTTAAGTTTGGAATTCCTCGATTTTTAATTAAATT
ATTCTCTTTTCCACAGCTATTAAGTGCAGTCAGAGCAAGTTGTATGGCTA
TTGTTATTGGTCCTTTGATTGGAGTGATTATCTTCTTAATTGCTGGTTAT
TGCTATTGGAAACGAGTAAAACGAGGCTCGTCTGTCGACGCAAGTGAGGT
TGGCAAAAGTACGACTTCGATGTAAATACGCACAATCATGCTTTCTTAGC
TTTTATTTGGTTGACTGGTAATGTTATTTTAAGCAAATCAGTTTTTTTGG
ATTTTTGAACGATTCGAAAATTTGTTTTCGAGACACCCCGAGATTCGTCG
AAGCTTCTACCATAGCATGACTTAACATTCATTCCCGGGATAAAACAT Coding sequence (CDS) from alignment at scaffold_242:1444181..1445078- >TCONS_00054406 ID=TCONS_00054406|Name=TCONS_00054406|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_242:1444181..1445078- (Clytia hemisphaerica)
CTATTAAGTGCAGTCAGAGCAAGTTGTATGGCTATTGTTATTGGTCCTTT
GATTGGAGTGATTATCTTCTTAATTGCTGGTTATTGCTATTGGAAACGAG
TAAAACGAGGCTCGTCTGTCGACGCAAGTGAGGTTGGCAAAAGTACGACT
TCGATGTAACAGCATTCAATAGAACCGATCACTGGGTCAGCAATCGAAGT
TGTCAACCGTTTACAACTCAATACATATCTGACTCCGGCAATGTTGTCTT
CACCACGCATGAAACCATACAACGTCAGTTATGTTGAACACAATACAACT
GGTGTAACCAAACCTTTCCCAATATTGTGGATGGAAACACATGCTTTTGC
TACAGCTAAGGAATTAGCGGCTATGGATAAGCTATTAAGTGCAGTCAGAG
CAAGTTGTATGGCTATTGTTATTGGTCCTTTGATTGGAGTGATTATCTTC
TTAATTGCTGGTTATTGCTATTGGAAACGAGTAAAACGAGGCTCGTCTGT
CGACGCAAGTGAGGTTGGCAAAAGTACGACTTCGATGTAACAGCATTCAA
TAGAACCGATCACTGGGTCAGCAATCGAAGTTGTCAACCGTTTACAACTC
AATACATATCTGACTCCGGCAATGTTGTCTTCACCACGCATGAAACCATA
CAACGTCAGTTATGTTGAACACAATACAACTGGTGTAACCAAACCTTTCC
CAATATTGTGGATGGAAACACATGCTTTTGCTACAGCTAAGGAATTAGCG
GCTATGGATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054406-exon-scaffold_242-1575043694:1444856..1445078 | TCONS_00054406-exon-scaffold_242-1575043694:1444856..1445078 | Clytia hemisphaerica | exon |
| TCONS_00054406-exon-scaffold_242-1575043694:1444181..1444512 | TCONS_00054406-exon-scaffold_242-1575043694:1444181..1444512 | Clytia hemisphaerica | exon |
| TCONS_00054406-exon-scaffold_242-1510915933:1444856..1445078 | TCONS_00054406-exon-scaffold_242-1510915933:1444856..1445078 | Clytia hemisphaerica | exon |
| TCONS_00054406-exon-scaffold_242-1510915933:1444181..1444512 | TCONS_00054406-exon-scaffold_242-1510915933:1444181..1444512 | Clytia hemisphaerica | exon |
| TCONS_00054406-exon-scaffold_242-1491911889:1444856..1445078 | TCONS_00054406-exon-scaffold_242-1491911889:1444856..1445078 | Clytia hemisphaerica | exon |
| TCONS_00054406-exon-scaffold_242-1491911889:1444181..1444512 | TCONS_00054406-exon-scaffold_242-1491911889:1444181..1444512 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1444181..1445078 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002159 | CD36_fam |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
Blast
The following BLAST results are available for this feature:
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