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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054294 ID=TCONS_00054294|Name=TCONS_00054294|organism=Clytia hemisphaerica|type=transcript|length=518bp
AAAAACCACTGCTGTCCTATAGAAATTATAATTGCATTGATAATGTATTT
AAAAGTGTCGGTTGAACGGACCTCATCATTTCTTATCATctatcaatttg
aaaaaaaaaatctaaagagaGTGTTCACATTTTATTACTGTTGCTATTAA
TCGAAAAGAAAAACTTGTCATTTTAATGCCGTTAAGAATTTTATTGTAGT
GGTCATTGAGGGACAATAAGATTTCTTTAGCTTATCTCTCTTCAACATAA
AGTAGTTTTTTGCTTATTATGAGACAAATTGATACTAACCTCTAAATGAG
GGGTTGAAACTTTTGTGACTGTTGTATATTGAGAAATAATTTGTAGAGAG
GTGCGATCAGACGTCTGTCAAGCATGGCTGCTGAACTGGTGATTCTTGGA
GTGTGTGGTTTCATTTTATTACACGCCAGTCAAGTTCAACCCAAGAATAC
AAGCTCTGTTATTATTGCCAACCTTCTCAGCTTAGCGGTTGGAACAATCA
TTTACTGGGCAATCGGCN Run BLAST on NCBI transcript from alignment at scaffold_242:1746289..1751322+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054294 ID=TCONS_00054294|Name=TCONS_00054294|organism=Clytia hemisphaerica|type=transcript|length=5034bp|location=Sequence derived from alignment at scaffold_242:1746289..1751322+ (Clytia hemisphaerica)
AAAAACCACTGCTGTCCTATAGAAATTATAATTGCATTGATAATGTATTT
AAAAGTGTCGGTTGAACGGACCTCATCATTTCTTATCATctatcaatttg
aaaaaaaaaatctaaagagaGTGTTCACATTTTATTACTGTTGCTATTAA
TCGAAAAGAAAAACTTGTCATTTTAATGCCGTTAAGAATTTTATTGTAGT
GGTCATTGAGGGACAATAAGATTTCTTTAGCTTATCTCTCTTCAACATAA
AGTAGTTTTTTGCTTATTATGAGACAAATTGATACTAACCTCTAAATGAG
GGGTTGAAACTTTTGTGACTGTTGTATATTGAGAAATAATTTGTAGAGAG
GTGCGATCAGACGTCTGTCAAGCATGGCTGCTGAACTGGTGATTCGTAAG
TCATACTTAACTTTCATAACTTTCACAATGAACTCAGCTTTCTCATTTAT
AAACAGAAGTAACTTAAGTGTATTGATgtggacttttttgaaaaattttt
aaaaattcttgttTCTGGGTTCACCAAGACACTCGACTCTGTTTTACTtc
gtaccgtaagttggtctaatatcgacatccctcgtctaattccgaaaacc
ttctttagagacaggaataacaTGAAACCTTGAATCACTgtttgaaaaag
gattattcctctcgaccactaagcaaaaaaaaacagtttcaacctttcta
tcaagttcagctgataaaaagggtgtctgaattagaggaggggtgtcgac
attagaccaagttacggtagggCTTGCTATGTCTTTACAGAGGTTGTTAC
TACACGGGATTCCTCTGATCAGATTACCTTTTATCAACTAACATTTAAGG
CAACTCAAATTTTGATCCCAGGCAGGGTCctgagatttaaaaaaacaaat
atataTTACCTGgtgaaattttgcaataaatagaaagtttactttaattt
caagaaaattcagGGTTTTTGTTACGACATTTTCCATTTGGgtgttaatt
ttcaaaaatttcggatAGCAGCAGCACATCTAAGACACTTTTTGAAGACT
TAAGATAgccttttttacaaatttcgcaacaCTTTAATTAATCAATTAAT
GAAATTAATGAACTCTTTTCCAAAACAAAAGTCGCCAAAATTTGGCAACG
GCTTTCGGAAATTATAATGACGATTTTCTATGTCCAGGatgttaaaaatt
tgaaataaaaaaacgttatttttatcagtttgcgactgttttcttatttc
ttttgCCTTAAAAGCTGAGTCAGCACTTACTGAGGAAAAATGAAGAGACA
AAAAACATGCACAGTATGACCAGGCTTACAAATAAGTATCACGCAATCAA
AACACTGACCTGATGATATAATTATCTACGCTTTGTACATCACGGAaaac
attttactgaccagatttttttgtttttgaagcaTCTGCTGTTTTTCCCA
TTTAGCATCATTCACTAATTACTTAGATTACATTTTGTGGTCAGTTGATT
CCAATTAGCAATTTGTAAGATCTCGTGGgaaaatgatattttgtcaaTGA
GTCGTATCGAACTTGTTTTCGATGTATTTACGCCCCTTTTTGTGCTGAGG
TGAGCGGTTAATGGAAATCAAACCATAATAATGCGTTTTTAAGCCGGTTA
CCCTACCGGACTATACTAGGAATCAGCCATATATGATAATTGAGTCGAGT
CGAGTCGATCATCCCACCAAAATTGAGCTAAAGTTGattatttcaattct
tttctATCAAAATCTTGCTCTTCCAATAAACGATATCAGCTTCGCATGAA
AAATCAGATTTGACCCTCgagaattgcccacaatgctttgtgcggaagAA
ATTTCACCGTTAACTTTTTctgcgcaaagcattgtgggcaattctcggag
gtcaaatctgagttttcacgttaagccgatatcgtctattgaatcTTTGG
TAAGGTAATCGAGGTATcacaaagaaaaatcattacCACAAAATTAGATA
GCAGGTCACTTCAAGTCACGTGGTATTAGAAATAACTTACATTAGGTTAT
ACAGTCTTATCTCTCGAATACGATCAAAAGCCGTTTTTTAGTATGTGACA
GAAAAGCTTAACATTTTTTGATGTATTACGAGCAGCAACTAATGCTACCA
AAAATACACTtttgtcaaaacaaaataatgaaatattttaaaattgactA
CATAAAATGTCAATTAACTGCTTGAGTTTTTGCAAGaaccaataaatttt
gtccattgAGTCCAGCGagactttaacccttctcatgCAAGAGAAAttaa
aaccacttatttcccatccaaaactcGCATAGAACGCGTTGTAATCATGA
TggcggattgtatctagcggttcctttatTTTGGAGgactaaattttttg
aaatctagcgatagattttggTTTTAATCCGGTGTTTTTGTAAAAACTGC
GCGTGGGCGTTCTGGATTGGAAATAGGTGGTTTcgtttcccatccaggag
tttcgcctctagcccttcgggcttgaaactcaatgattttGCCGAGCTtg
agattgttcttaaatttctattgttccacATGATTGTGCTATTACTCTGA
GTGTCTAAATCTGAGGCTGTTGTTTTTAtaacattgttcttataaataaa
aaaagcgtgtattttctTGGATAAGATGTAAAATTAACTTACGTGAAAAC
ATAAGAATTCGATTAAAGGCTGTCTTATCAGCTGTACCACAGCTGTACTT
GTTCTCGACTTTACAATTTCGACTTTGAAACCTTTAAAGAAACTGACTGG
CAGTTATAACTTTACACGTACAATatacccctgtttcacagccccggtgg
aaattCTTCTCACAGTGGgactaaaaatttctattttactttatatccat
acatggggctgacgaacatttccagggccAGGGGTAACCCAAGAAGAATT
TTCAGGAGGGCTGAAggagtgttttttcatttttccaagggctaaatagt
tattttaaaatttccagggggtgaaagactgattttagttagTCTACGCA
CTTCAAGTATGCcaataatttttccaaggtttttttgtttgtaaacTTGG
CCATTTTCCAGGACGTATCCACATATTTTCGAtattctttttgcttggaa
aaggttcgtccacccccctgtatcaATTTTTAATGGAATAGCCAATTAGA
GCATTTTTACAACCGAGGAcgaaattttagccaatttttcatTGGGTTGG
AGTccaaccgggtctgtgacacaggtgTGTTCTACATGGTGCATAACAAA
ATCATAATTAATTTGGTGATCTGAGGTAAACTAACTGCTTTGAAACCTCA
AAAGCATTTCTACACAATGGCAACTTCTTGGCAACTTACAAATCATTGCA
CACCGCTATGCAAACGtcaaaattattacttttaacatttgaccgaaatg
ttcaatcccacaatactttccatcttgattcgtaatgcgtgcacattatt
acttttgtattgtcaataagtgtaattgacttgcaaaagcaattaatgca
aaggatgatgggattaaaactcggacaagcagtaattttgatgtctattt
ttagaatcactgCGGTATGCTATGCCGAACCCTTACTACGTCACCACGCC
ATCGCgcaaaaaagtgttttgatcACATCACGCCGAAAATATTCTCTTAT
CAACCTCATTACACCGAGATTTTTTGGTAATCATGGATCACGCCACCACG
CCTTTGACTTAATGCatgtatttcattttttcattctaGTTGGAGTGTGT
GGTTTCATTTTATTACACGCCAGTCAAGTTCAACCCAAGAATACAAGCTC
TGTTATTATTGCCAACCTTCTCAGCTTAGGTAAGTTCGTCCATTGCATTA
GCAACCAAAACTCCCTCCTTTTATCGTCTGCTCAAATAACGATTACAGCT
TTTAAAAAGTCTACAGAACTTTTGTCTAGGATTAAGGGTAAGATAACTTT
AATTGACTGCACATGCAATAACACAAtggatttaaatatttttacccATA
GGGggtaccattgagtttcaagcccgaagggctagaggtcaatctctaac
ctttctcaagtaagaaaaattgaatccttaaaatatgcgccgtatttttg
atgacggattgaatctagcaattcctttattttcgagtgatatatttttc
aaagttaagcggtaaattttagtttcaatctgtcatttgtgtaaaaacca
ggcgggtcgctcaaggccgcgcaactttggtaggatttgttggcttcaaa
tcctaccaaagagattgacttctagcccttcgggctttaactTCAttggg
ggtactacccttgccgaccaaCGGGGTgtgtagtctgaatcgcagacctc
tacaaaaccccagaatctagcaattcctttgttttcgagtgatatatttt
tcaaagttaagcggtaaattttagtttcaatctgtcatttgtgtaaaaac
caggcgggtcgctcaaggccgcgcaactttggtaggattttttggcttca
aatcctaccaaagagattgacttctagcccttcgggctttaactTCAttg
ggggtactacccttgccgaccaaCGGGGTgtgtagtctgaatcgcagacc
tctacaaaaccccaggtagtaaaGCGAGCACGAATCCGTTTGTGGATGCT
AGCAGCCTACGGGGTGTGCCGCTAGAGTTATAAAAATGGGTCCTTCCTTG
GACtcgctttttttttttaagtgactCTAATgagaatgggactgaaattc
caaaatgttctcaaagttttccttatttttccaaaattcccctaaaaagg
taccctacgagggactgatttttctattttggtgtttttgtgaccctacg
tgggactcgtggaggttaaaagaTACCCTTACCAGCGTCACATCCCCGTG
GCCTTTCCTCAGGTATTTTCAATCTTGAAATTTCCCCCTGTTCCGTTTCA
GCGGTTGGAACAATCATTTACTGGGCAATCGGCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054294-exon-scaffold_242-1491911889:1746289..1746683 | TCONS_00054294-exon-scaffold_242-1491911889:1746289..1746683 | Clytia hemisphaerica | exon |
| TCONS_00054294-exon-scaffold_242-1510915933:1746289..1746683 | TCONS_00054294-exon-scaffold_242-1510915933:1746289..1746683 | Clytia hemisphaerica | exon |
| TCONS_00054294-exon-scaffold_242-1575043694:1746289..1746683 | TCONS_00054294-exon-scaffold_242-1575043694:1746289..1746683 | Clytia hemisphaerica | exon |
| TCONS_00054294-exon-scaffold_242-1491911889:1750078..1750167 | TCONS_00054294-exon-scaffold_242-1491911889:1750078..1750167 | Clytia hemisphaerica | exon |
| TCONS_00054294-exon-scaffold_242-1510915933:1750078..1750167 | TCONS_00054294-exon-scaffold_242-1510915933:1750078..1750167 | Clytia hemisphaerica | exon |
| TCONS_00054294-exon-scaffold_242-1575043694:1750078..1750167 | TCONS_00054294-exon-scaffold_242-1575043694:1750078..1750167 | Clytia hemisphaerica | exon |
| TCONS_00054294-exon-scaffold_242-1491911889:1751290..1751322 | TCONS_00054294-exon-scaffold_242-1491911889:1751290..1751322 | Clytia hemisphaerica | exon |
| TCONS_00054294-exon-scaffold_242-1510915933:1751290..1751322 | TCONS_00054294-exon-scaffold_242-1510915933:1751290..1751322 | Clytia hemisphaerica | exon |
| TCONS_00054294-exon-scaffold_242-1575043694:1751290..1751322 | TCONS_00054294-exon-scaffold_242-1575043694:1751290..1751322 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1746289..1751322 + |
Blast
The following BLAST results are available for this feature:
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