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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054436 ID=TCONS_00054436|Name=TCONS_00054436|organism=Clytia hemisphaerica|type=transcript|length=1502bp CAAAGCAATCATGAAAATGGGAAAGTTCAAAGAAAATTCGCttctttttc aatgtttttcatcATTAAATCCAAGAATATAATCTGAAGCGACgTTGCAA ATAATCAGTCACCATGTTGTCCTTCATTCCTCATCAAAACAACTTCCTCG CCTCGATGTCCTTCTTACAACATGCTTTAAGCTTGCCTCGGCTACCATTC AACATGTTCAACGACCCTGGGTTGCTACATTTCAGCATCATTGCTACCAT AGCAACAATCGCCATTATGGCAAACATTTACCTCGTCACTTACATCATGC GAACTAAAACGACGCGCATCTGCAAAAACTCTTGTTATGGATATTACCTG CTACACATCTCTTTTTTGGATATCTTAGCATCAACTTTAGCGATTCTGTT ATCCATAAATACACACGCGGCGGTGAAACCATCTAGCTCATCAATGAGTT GGATTTCTGTGAATGGACATTATTTGAACCATATTTTTTGTGGTGTTGTC CACAGTACTATTGCATTGATGCTTTACCAGAAATTCCTCTGTTTACGTAA ATCTTCACATAAACGAAAAGCATTCTTTAATTTGAAGCTGAGCTTATCCT TGACGTGGTGCTGGGCGGTCGGAAGCGTACTCCCAGAGATCATTGTATAT AAAAATGCAATCGAGGAAGAAGATAGAGAAAACAGTTCATGTTTGATCGT tataattgttttgttaattatCGTTCCGTTGTTAATGATCGGTTATTATC GAATCAGTATTCTTCGATTACGAAGGAGTGAAAGCGTTTTATTATTGAAA CGGAGTCGTGAATACCGCAAATTTGCTTCCGTTTGCTTACTTTTATCGAT AGCCCTGGTGGCTTGTAATCTACCCAAGTATTTATATCATCTTTTACAAA TCATGAATAAGGAAGGGAAAATTGATttctcattttctgaaaaactgcAG ACAATCTTTGATACGATTTCCTGGCTTTATTTACCAGTTATACCGCTTAT TTACTGTCTAACTTACCGGATTTATAAACGCAAACCCAAGTTACCAGACC TGACCAATAGtaataacaacaataacaacatCAGCGCACTGCTTGAATCC AAATTCCTTTCCATGGCGGCCACTCCAACACCGACCTCATTAACGACGTC GCGGAGCCAATCGGTACCGAATTTCGAACCTAGGAGACGCTCCTTGTTTG ATAGACGTAAGAGTAATAGTAGTGTTGAGGATATCTTGGATATTTGTTCG CGAAGATTTTCAGCACCGAATGTGGAAGTGAACCCCGAGCTTCTCTCATC CTGCATGTTGACTTTAGAATCTATCTATGAGGCGAACAGGAAAAAGAAAT CACTTTTCAGACAAGCATTGAGACGGTTCAGTGGGAATCCGACTGATAGt gtcgatgacgtcagcatgatGTCATCACAAGATTCGATCCCATTCCCCCA TGTTGTACATCGGTTGAATCAAGGCGGACAAAGTCCTTTGAAAGAGGATT GA Run BLAST on NCBI transcript from alignment at scaffold_242:1759360..1765780- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054436 ID=TCONS_00054436|Name=TCONS_00054436|organism=Clytia hemisphaerica|type=transcript|length=6421bp|location=Sequence derived from alignment at scaffold_242:1759360..1765780- (Clytia hemisphaerica) CAAAGCAATCATGAAAATGGGAAAGTTCAAAGAAAATTCGCTTCTTTTTC
AATGTTTTTCATCATTAAATCCAAGAATATAATCTGAAGCGACGTGGGTG
TTTTTTTATTGTGTCTAGTAGAGTAATCATTTGATAGGGAAAGGAAAATC
CAAACTTTATATTGCTTTATATCTATTTGAAACAACCCTTATCTTAGCTT
TGATCTTAATGTTATTTCAATTTGCGTAGGTGTTTCATAGCAGTTTAGAG
GCTCTGTTTATTAGTTCTACTGGCTGTCTGAACGAATCAGTTGCCGGCTG
AACCTTCTGAACAAAAGGACCAAGAAGTTGTGTGGCTTTTGTTAGCTTTT
AAGGTTGTCTGGCAAGGAAAGAATCTGCCATAACTTGATTTCATAACATC
TCAGTATAATGCTTTGGATAGGGAAGGCCCGAGAGGTGCAGATATTGGAT
ATGTGTGGACGGGACCTCCCAAAACCAACCCTTAGAGAGACTAAATTTTA
GTGAAAAAGTGACTCTTATAAAGAAATTTTTGTAAGATTTTCTTCCTCGA
TTTTCGAAACATTAGTATCAATCGCGGGGATGAAGATTCTACCTGTTTTT
TTGGCTAGTGGATTTCACATTCTGCTTTCAACTCGTTAAATTATGTCAAA
TGTTTTTGTTTCATTATCACACAGACACACCATCATTTCGATTACTCCCA
CGAGAGTTGAGATTTATGACTAGGCTGGAGGTATGATTGTCGTCCAAAAT
TAGCTGTTATTGTTCCATAGAACGGAATATATTTTGTTAATGTTCAGGTC
TATTGATTTTTTGAAAATTTAGATATTCACCCGATTAATTATAAGCCTTT
CAAAATTCACACGCGGGTTTAGACTTCGGATTTCAATAATAAAATACATA
TTCATTCGGAAAATTTTTTTCTTATTCCTGGTTTTGAACTTTTACAGTAA
TCCTTCAGAAGTTCAGTTTTCTGTTTCAAAGAAATTCATGTCTAAAAAAC
TAATTTTAATCTGTGAAAAGAAGGATGTAACTTGACAGTTTAAGGTTAAA
TATCTTCAATTTTGCAACCTTAAAGTCGTGTTTTTATCAATAGAAAGGTT
AAGCAAAGGTGAAACCTTTCTCTACTATGGTTAAACTTCTTTATGGTTTT
GTGAGAAGCTGAAACTCAGACTTCGTTCGTTTAATAAAGAAAGTTTCTTG
GTTTAATGAAGGGTCGACAAAGAAGGTTTGATATTTTTGGACCTACCCCG
GTGGGGTGGAGGTCCTATAAATTAACCCGTGTTCGTTAGTTAGTTAGTTA
GTTAGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTAGTTACCAACTTTTC
TCGAGATTGGCTCATTCAATTTTTCTGATTTTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAATTTTCGAAAAAAAAATTTTTCCGGCCGGTAGAACCGGAAATG
TCCCGAAAAAAGCGGTTTTTTGAGATTTTCTCAAGATTTTATCATTAGTT
TTTTGCGATATTTTGCACATAGATGCACATTAGTACTGCCGAAAAGGTGT
CGAAAACCGTTTGCCGAAAAAAAATTTTTTCCGGTCTGTAGAACCGGAAA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTTTTTGAGATTTTCTCGAGATTTTCTCATTAGTTTTTTGCGA
TTTTTTGCACATAGATGCACATTAGTACTGCCGAAAAGGTGTCGAAAACC
GTTTGTCGAAAATTTTTTTTTCCGGTCTGTAGAACCGGAAATGTGCCGGA
AATCGTCGCTTTTTTAACATTTCCGTCACATTTTTTCAACTTATTTAATT
GTTTCTTTACAGAAAAATGTTCTTTATGATGATGCCCAAAACTTAGCATC
GTTTGATTTCCAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
CTTTCATTTTTCTGTCTTTAGAAAAAAAGAAAGGAAAATCTTCAAAATAT
TTTCCATCAGTGAATTTTAAGCTATTTCAGTGCAGTACGAATGCTTTACT
CGCCCAAAAAGATCTCCAACACCCAATATTTTCTTGAAAATTAGATTGGA
AATCTTTAATTGGAGATTTTTTTCGAAAATTGATTTCTTCGAATGATCGG
TTATGACGAAAGTATTTTAGCTAATAAAGGAGGAATACAAGTGTTTTTAG
GAAAATCTGAATCAAATTGAATTGATAAAATTGTTGATGAAAATCTTGGT
AAATGATCAAAAGATTTAAATAGACCTTATCAGAGTTTTTGATTTTTCGA
AAACAGCGATGCATTGTGGGATTGTTTGGGGGTATTTATTACAATAGAAT
TCCCTCGAGGAATTCCTAAGAGATTTCTATTGTAATACCCCCGAAACAAG
CCCACAGTGCATCGCTTTTTTAGAAAAATAAAAAACACGGATACGATCTA
TTTAGCGCCAAACAACTTTTTTTCGGACACACTGTATATGCATATAGTGT
TCCATTCCCTGTTCATCATAGACCTGACGAATTTTCAACACATTTCCAAG
GGGAATGTCTACTGCAATTTATATTCCACACATCTGCATTTCTTAACTCC
TTATGAAAAAAATCTTCCCCTTTTTCAAAGTTCGTGGTCAGACGGTTGTG
AAATGAAAACAAAAAAAGAAGAAGACGAAGAAAAGAGTGATAGAAGGTGG
ATTTTCAGTAAAAAAGGGGATAATTTGATGATTAAATTTAATATTGTCGC
CATATTTGTATGTGTATACAGGTGTATTTTCTTGCTTTAAGAATGATAGT
CGTTGTCGAAATAGTAAAAGTTTTCTTTTGCTCTGTTCAAAAAAGAAACT
GGATTCAATTTAGTTCAGTTAGTTTCTCTTTTTGGAGTTGGAAACAGAAT
GAAGAAGCTGATAAGAATACTACATCTTTTTCGCCGGCTGAATATACTGT
TGTTAATGACAGGGCTACGTTTCATTTCTGGGAAAGGGCTATTTTATGGC
ATATTAGGCGGTCAAAAGGGGTTGGATTTTCTCCTGTGTGAAAACCATGA
TATTTTGGCCCATCCGTTTCCAGAAGATGATGTTGGCCCTGAATGAGTTT
TGATCGTTGGTACAGATACAGATAAAAACTTTCTTAAAGCTCTATTTAAC
ATGGCTGAATTAATCCTGACTGAATGTTTATTTGTTTTAATGTCTGATTA
AATGAGTTTCATCTCCCAAAACATGAGCCCTTTAGAGTTGGAAGGAAAAC
TTGTTTGGCTGTTCTGCATTTAGTTTTGTAAAAGTTTGACAAAGTCTGCC
GGCCATGTAGTTTAGGTTGAGGTTGTTTGAGGTTGGTTGAGCAAATGTTG
GCAGTTTTTATGTACTTGTACTTTTATGCAAGCGTTTGCTTTCATTTTTG
ATCCAACAAAGCTGCTACTTTCCGTTGTTCGATTTGTATGTTGAAAGTTT
TTGTAAAGTCAACATAACATCGACTTGCAAACAAAACAGTGTTCTAAATC
CAGCAACTTGCATCTGATATTAATTTATAGGGATTAGCTCAATCGGATTG
TTTGGTATGTGATGTTTAAGTAATGGAGAAATTTTCAATGGTCGAGATTC
GGCTGTTCTTATGTTTTTGATAATCTCATTTCGTTCTTATTTTTAGTTCT
TAAATCTGTTAGGCTCTGAAAGATCAGGAAGAAGATAAAGATTCAGCCGG
CCGGGTACACGGTTTTTTATAAGAACAAACTATATGAGAACGTAAGGTTT
CGATGGACCAAAATCCTCCGAAGGCTTAAAAAATTTTGGATGTTCTTTAA
AAGAACGTATAATGAGTTTTGTTACAAGGGGTAAAAATCATATTTTCCAT
TTCATTTTTCAGGTTGCAAATAATCAGTCACCATGTTGTCCTTCATTCCT
CATCAAAACAACTTCCTCGCCTCGATGTCCTTCTTACAACATGCTTTAAG
CTTGCCTCGGCTACCATTCAACATGTTCAACGACCCTGGGTTGCTACATT
TCAGCATCATTGCTACCATAGCAACAATCGCCATTATGGCAAACATTTAC
CTCGTCACTTACATCATGCGAACTAAAACGACGCGCATCTGCAAAAACTC
TTGTTATGGATATTACCTGCTACACATCTCTTTTTTGGATATCTTAGCAT
CAACTTTAGCGATTCTGTTATCCATAAATACACACGCGGCGGTGAAACCA
TCTAGCTCATCAATGAGTTGGATTTCTGTGAATGGACATTATTTGAACCA
TATTTTTTGTGGTGTTGTCCACAGTACTATTGCATTGATGCTTTACCAGA
AATTCCTCTGTTTACGTAAATCTTCACATAAACGAAAAGCATTCTTTAAT
TTGAAGCTGAGCTTATCCTTGACGTGGTGCTGGGCGGTCGGAAGCGTACT
CCCAGAGATCATTGTATATAAAAATGCAATCGAGGAAGAAGATAGAGAAA
ACAGTTCATGTTTGATCGTTATAATTGTTTTGTTAATTATCGTTCCGTTG
TTAATGATCGGTTATTATCGAATCAGTATTCTTCGATTACGAAGGAGTGA
AAGCGTTTTATTATTGAAACGGAGTCGTGAATACCGCAAATTTGCTTCCG
TTTGCTTACTTTTATCGATAGCCCTGGTGGCTTGTAATCTACCCAAGTAT
TTATATCATCTTTTACAAATCATGAATAAGGAAGGGAAAATTGATTTCTC
ATTTTCTGAAAAACTGCAGACAATCTTTGATACGATTTCCTGGCTTTATT
TACCAGTTATACCGCTTATTTACTGTCTAACTTACCGGATTTATAAACGC
AAACCCAAGTTACCAGACCTGACCAATAGTAATAACAACAATAACAACAT
CAGCGCACTGCTTGAATCCAAATTCCTTTCCATGGCGGCCACTCCAACAC
CGACCTCATTAACGACGTCGCGGAGCCAATCGGTACCGAATTTCGAACCT
AGGAGACGCTCCTTGTTTGATAGACGTAAGAGTAATAGTAGTGTTGAGGA
TATCTTGGATATTTGTTCGCGAAGATTTTCAGCACCGAATGTGGAAGTGA
ACCCCGAGCTTCTCTCATCCTGCATGTTGACTTTAGAATCTATCTATGAG
GCGAACAGGAAAAAGAAATCACTTTTCAGACAAGCATTGAGACGGTTCAG
TGGGAATCCGACTGATAGTGTCGATGACGTCAGCATGATGTCATCACAAG
ATTCGATCCCATTCCCCCATGTTGTACATCGGTTGAATCAAGGCGGACAA
AGTCCTTTGAAAGAGGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00054436-exon-scaffold_242-1575043694:1765688..1765780 | TCONS_00054436-exon-scaffold_242-1575043694:1765688..1765780 | Clytia hemisphaerica | exon |
TCONS_00054436-exon-scaffold_242-1575043694:1759360..1760768 | TCONS_00054436-exon-scaffold_242-1575043694:1759360..1760768 | Clytia hemisphaerica | exon |
TCONS_00054436-exon-scaffold_242-1510915933:1765688..1765780 | TCONS_00054436-exon-scaffold_242-1510915933:1765688..1765780 | Clytia hemisphaerica | exon |
TCONS_00054436-exon-scaffold_242-1510915933:1759360..1760768 | TCONS_00054436-exon-scaffold_242-1510915933:1759360..1760768 | Clytia hemisphaerica | exon |
TCONS_00054436-exon-scaffold_242-1491911889:1765688..1765780 | TCONS_00054436-exon-scaffold_242-1491911889:1765688..1765780 | Clytia hemisphaerica | exon |
TCONS_00054436-exon-scaffold_242-1491911889:1759360..1760768 | TCONS_00054436-exon-scaffold_242-1491911889:1759360..1760768 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_242 | supercontig | scaffold_242:1759360..1765780 - |
Blast
The following BLAST results are available for this feature:
|