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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054518 ID=TCONS_00054518|Name=TCONS_00054518|organism=Clytia hemisphaerica|type=transcript|length=1139bp
caaaatgttgATCGATGGAAGAACCAAACATAACTACACACCATTGCATT
TTGCAGCATTGAACAACaaacatgacgtcatcagaCGGTTGTTGGCCAAA
GGAGCGGATCATGAATTGAAAGATGATAATGGTCAACGCCCTGATGAACA
GTCTGAATGTGATGGTGTTACCAAAGAAATCTTTCGATCGTTTCGTTCGT
CTTGattgattgattgattgtttccattgtctctttcatcgtttccaatg
acgtcatcggttccAAACATTTCCACattcccAACATGACAGCACGCATG
AGAAGTTACACCCGTTATTTTCGACGCCGTTTCTACGCTTACGATATTTA
TTCATTCCATCTCTACATTTCTGTAACGCATTTTGGCTTGCTTTTAGATG
TATTTTTACCACTTCACTATCTTGACTATTATTACGTCAACCGTCACTAG
TTTTGGTGGCGTGTCTACTCTTGTGCCCTTACTTTTCCACCTTATGGATT
ACCTCGGTTGAATATGAAAAAGAGTCACTATTGATTTCGATTGGATCACT
TCCCTTGTAAATATCCGACTTTTTTCACTAACTCGGTGAAATTTTGCTCA
GTCAGAAAACCCTGCCAACAGTGGCCTCGgtgaaaacatgatttttttct
tacaatCAAGGTTAAATTATCTAAGTACTGTCAaagtttttacggttttt
tttTCGGAAGAGACTCATGGGCGCTAAATATTGGATGGTTTTAGTTTGCT
CTTTATTTCAAGCCGATGAACATTTTTTGGTATATATATACGACGAATAT
TTATAtggtaatagacgatatcggcttaacatgaaaactcagatttgatc
cccgagaattccccaagTTTCACAATGCTTTGCacggaaaaaagttcacg
gtgaaataTTTTCCgtgcaaagcattgtggggaattctcggggatcaaat
ctgagttttcacgttaagccgatatcgtctattagatAAGAAGACTTTAT
CATTATATAGAATTGATAAATACATATACTGTATAAATATCAGGGGGGAT
CGGGTTcaataatccgaaatgataagccgtcgtcgaacatagaggtcgtc
gtcgccgcgcatagaggccgtggtcggacatagaggtcg Run BLAST on NCBI transcript from alignment at scaffold_243:174485..176384+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054518 ID=TCONS_00054518|Name=TCONS_00054518|organism=Clytia hemisphaerica|type=transcript|length=1900bp|location=Sequence derived from alignment at scaffold_243:174485..176384+ (Clytia hemisphaerica)
caaaatgttgATCGATGGAAGAACCAAACATAACTACACACCATTGCATT
TTGCAGCATTGAACAACaaacatgacgtcatcagaCGGTTGTTGGCCAAA
GGAGCGGATCATGAATTGAAAGATGATAATGGTCAACGCCCTGATGAACA
GTCTGAATGTGATGGTGTTACCAAAGAAATCTTTCGATCGTTTCGTTCGT
CTTGGTAAGAAACATATccactttttcatgttttttagggtggaaatatt
tttcgtaggttggaatctttttttctattattgCGAGAAGTGTTGAAACT
Ttttcttaaagtttttaaaatagatgtgaaatgttattttaggtagactt
taaatttttcagtttgataaattttacctTTTCGGAGTTTAAATGAATGA
AACGGataaattaatttcaattttttgattaagatttttcattgcattgg
AGCAGACATATTTTGGAGACATATTTTTGCAAATAGATggttgtttatga
aattttttctctggttgttatgaattaatttttcagtgaagaaagaaatt
gtcgtttttttcgattttatagTACGTTTCTTATTATATTGTGTTCATGT
ATTTGTTTTCAATTGTTACTCACTCGatgatttatttttcagattgattg
attgattgtttccattgtctctttcatcgtttccaatgacgtcatcggtt
ccAAACATTTCCACGTAAGTCTATTTGATTATGTATTTGGTTTCTGGTTG
AAGCAATATTGTGTATGAAGCCTAAAATATCCTAACTTTGACCTAGAAGT
AAGAAACAGCTTTGCAACAACATGAGGCTGAAAATTCCAAAACAGGTTGT
GATACTGTACCTCAAAGAAGTttactagttcttataaaaaaattgtactG
CTCCGTGGTTTTTTAACTTTTCCATCTGATCAGATTCTCAGCATTCTCAT
TAGccgcttttaaaaaaaaacatttattcaTCTTCAAGAAGTCAACAAGT
TTCGTTTGGCAATAAACctccaattttttatttttagattcccAACATGA
CAGCACGCATGAGAAGTTACACCCGTTATTTTCGACGCCGTTTCTACGCT
TACGATATTTATTCATTCCATCTCTACATTTCTGTAACGCATTTTGGCTT
GCTTTTAGATGTATTTTTACCACTTCACTATCTTGACTATTATTACGTCA
ACCGTCACTAGTTTTGGTGGCGTGTCTACTCTTGTGCCCTTACTTTTCCA
CCTTATGGATTACCTCGGTTGAATATGAAAAAGAGTCACTATTGATTTCG
ATTGGATCACTTCCCTTGTAAATATCCGACTTTTTTCACTAACTCGGTGA
AATTTTGCTCAGTCAGAAAACCCTGCCAACAGTGGCCTCGgtgaaaacat
gatttttttcttacaatCAAGGTTAAATTATCTAAGTACTGTCAaagttt
ttacggttttttttTCGGAAGAGACTCATGGGCGCTAAATATTGGATGGT
TTTAGTTTGCTCTTTATTTCAAGCCGATGAACATTTTTTGGTATATATAT
ACGACGAATATTTATAtggtaatagacgatatcggcttaacatgaaaact
cagatttgatccccgagaattccccaagTTTCACAATGCTTTGCacggaa
aaaagttcacggtgaaataTTTTCCgtgcaaagcattgtggggaattctc
ggggatcaaatctgagttttcacgttaagccgatatcgtctattagatAA
GAAGACTTTATCATTATATAGAATTGATAAATACATATACTGTATAAATA
TCAGGGGGGATCGGGTTcaataatccgaaatgataagccgtcgtcgaaca
tagaggtcgtcgtcgccgcgcatagaggccgtggtcggacatagaggtcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054518-exon-scaffold_243-1491911889:174485..174688 | TCONS_00054518-exon-scaffold_243-1491911889:174485..174688 | Clytia hemisphaerica | exon |
| TCONS_00054518-exon-scaffold_243-1510915933:174485..174688 | TCONS_00054518-exon-scaffold_243-1510915933:174485..174688 | Clytia hemisphaerica | exon |
| TCONS_00054518-exon-scaffold_243-1575043694:174485..174688 | TCONS_00054518-exon-scaffold_243-1575043694:174485..174688 | Clytia hemisphaerica | exon |
| TCONS_00054518-exon-scaffold_243-1491911889:175127..175198 | TCONS_00054518-exon-scaffold_243-1491911889:175127..175198 | Clytia hemisphaerica | exon |
| TCONS_00054518-exon-scaffold_243-1510915933:175127..175198 | TCONS_00054518-exon-scaffold_243-1510915933:175127..175198 | Clytia hemisphaerica | exon |
| TCONS_00054518-exon-scaffold_243-1575043694:175127..175198 | TCONS_00054518-exon-scaffold_243-1575043694:175127..175198 | Clytia hemisphaerica | exon |
| TCONS_00054518-exon-scaffold_243-1491911889:175522..176384 | TCONS_00054518-exon-scaffold_243-1491911889:175522..176384 | Clytia hemisphaerica | exon |
| TCONS_00054518-exon-scaffold_243-1510915933:175522..176384 | TCONS_00054518-exon-scaffold_243-1510915933:175522..176384 | Clytia hemisphaerica | exon |
| TCONS_00054518-exon-scaffold_243-1575043694:175522..176384 | TCONS_00054518-exon-scaffold_243-1575043694:175522..176384 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:174485..176384 + |
Blast
The following BLAST results are available for this feature:
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