TCONS_00054602 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054602
Unique NameTCONS_00054602
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054602 ID=TCONS_00054602|Name=TCONS_00054602|organism=Clytia hemisphaerica|type=transcript|length=648bp
AATCAAAGCTTTCAAACcatcaaatttgaaatcttcAGCAGACTCTGAGA
AATCGATTGAGTTGATAGTGAGCGAAGCATTTTTAActaaagcaaaataa
agatatgaCCATGCTGAGTGTTTTAGTTTTTACAATTGCAATTTTATTAT
CAGTAGGAGATGTATCACCATTGAGTGTTGATTGTGGCGAGCATCTGGAT
GATTACCACCTCAGTGTTGATTGCCTACACGGCTTATGCTCTGAAGGAAG
ATTCCATTACATTGGTTGTAAAAGAACATGCGATAATGGGTCAAGTTTTG
TTTGTCCGCAAAAAGAATACGGATGTTGGTGTCCACAAGGTTACGCTgaa
aacgaaaaagaagaatGCGTTCCCCTTTCAAAATGTCCTTGCAGAGTAGG
CGACAAAGTTTACCAGcCTGGGCAAACTGTGGTCAGAAGTCTCTGTACGA
CATGCACCTGTTTCAGTGGTTCTATGATCTGTTATGAGGTTTGCATTGTT
TAGGTCCTCCTGATCTGGATCAGAATACAAAGAATTTACAaatatttcat
gttttgttttatGCTATAATCTATATTGAGTAGTTGTGAATGTAATTTTA
ATTACATAAAACTTGTACTTGAAATATATCACATGATCacatttggaa
Run BLAST on NCBI

protein sequence of TCONS_00054602-protein

>TCONS_00054602-protein ID=TCONS_00054602-protein|Name=TCONS_00054602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MTMLSVLVFTIAILLSVGDVSPLSVDCGEHLDDYHLSVDCLHGLCSEGRF
HYIGCKRTCDNGSSFVCPQKEYGCWCPQGYAENEKEECVPLSKCPCRVGD
KVYQPGQTVVRSLCTTCTCFSGSMICYEVCIV
Run BLAST on NCBI

transcript from alignment at scaffold_243:229612..231847-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054602 ID=TCONS_00054602|Name=TCONS_00054602|organism=Clytia hemisphaerica|type=transcript|length=2236bp|location=Sequence derived from alignment at scaffold_243:229612..231847- (Clytia hemisphaerica)
AATCAAAGCTTTCAAACCATCAAATTTGAAATCTTCAGCAGACTCTGAGA
AATCGATTGAGTTGATAGTGAGCGAAGCATTTTTAACTAAAGCAAAATAA
AGATATGACCATGCTGAGTGTTTTAGTTTTTACAATTGCAATTTTATTAT
CAGTAGGTGAGTATAAGTTTACACTTGTGGGATTAATTCAGCCAATAGAA
TTCTGCGCCAGGATCCTGTATCTTCATTAAAATCGTCCAATCAGGGTTTG
GTCCAATACACACGTCGAAACATTTTTTATATACAGGGTGTCCCTAATTA
AAGTATCGAGTTTGAACATGCGATTGAGTAGAAAAGTTTGTGTGTGTTAT
CGCTAAAATATAAGAACGTTCTCCATCACACAGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGTAAT
GACAAAGAAAAAAGAGGGAGAGCTTAAAATACAATTTTGTGAACACGCAC
ATAAAACTTTCTACTCGTAGTTGTGTTTCGACTCGATACTTTAAATTATT
ATGTTACAAGTACAAAAACACTCAAAAAATGGCAAAAATAAGACGTGTTA
AGAACATTTTTAGGCTTCAAGCTCAGCTCAAAAAGTTAAGAACAATCTTT
AGCTGTCCCCAAAATTTTAGATGTTCTTATAAAAATCTGAATTTTCACTT
TTAGGAGATGTATCACCATTGAGTGTTGATTGTGGCGAGCATCTGGATGA
TTACCACCTCAGTGTTGATTGCCTACGTAAGAGAAAATTTCTAAAGAAAT
ATTATAGAATTATTTTTTATCATTATTTTAATTAATAACACGAAATTAAG
CAGATGTTCGACTAGAAATATTTTCCGCATTGAATGCGCGGTTTTATCAT
TCACTCATTAGTAATTTTAGTCTAAATTTTAAAAAATTTTGATTTTCGTA
ATTTTGAAACCCTTAAAGAGACTTGATTGCTTTTTAATGATGTTTTTACC
CATTTGAGGGGCTGAAAAAGGGGGTGAAAAAGGGATGACAGTCATGGCTC
GCACATACCCAACACCCATGTTGCCTAAGTACCCCCCAGATACAATACCG
AGTTTATGTATGTTTGTTTTTCTGTGACGGAGACGGTAAGGTTCTAATTT
GACTAGATCCTAACCAGCTGAGAACGACGGTAAATCAGCGCTTTTACCGT
CCTCGATTTTGTGGGTCAAAACTGCGGGTTTTTCCAAATCGCTTCAGTCA
CTCTACCGTCCCCAAAAGAGCAAATACATAAACTCGCTAATACAAGAGGA
ACGATTCGTTTTCTTTTGTCGGTCATGGTCATTCAAGTTCGATACTGTTA
TTCTTTTTTCTAGACGGCTTATGCTCTGAAGGAAGATTCCATTACATTGG
TTGTAAAAGAACATGCGATAATGGGTCAAGTTTTGTTTGTCCGCAAAAAG
AATACGGATGTTGGTGTCCACAAGGTTACGCTGAAAACGAAAAAGAAGAA
TGCGTTCCCCTTTCAAAATGTCCTTGCAGAGTAGGCGACAAAGTTTACCA
GGTATGTTTCCGATTAAAAATATCTATGAACTTATTGCCTGAAAAAAGTA
AAGCCAGCAGTGGATATTTTGCACGGGGTGAAGGGGGGGGGCGCGAATAA
GGTTTGCACATACCCGGTACCCATTTTGCCTTAGTACCCCTCGGGATGTT
TTGTTTTCCTTATCAAGAATCTTCTCAAATGATCAGCAAATTATTCGTAA
AAATATATTGATGATATTGTTAAGAGAGTATGCTAGCAAAGATCATAAAG
AGAAAAAGTTGTGCATCAAAATCTAAAGTCAAAGTGTGCTAAACGAGGAA
CGAGCTGCCATTTATAAACATTTAGTCTAAGAGATTCAATTTGTTCATTT
TTAGCCTGGGCAAACTGTGGTCAGAAGTCTCTGTACGACATGCACCTGTT
TCAGTGGTTCTATGATCTGTTATGAGGTTTGCATTGTTTAGGTCCTCCTG
ATCTGGATCAGAATACAAAGAATTTACAAATATTTCATGTTTTGTTTTAT
GCTATAATCTATATTGAGTAGTTGTGAATGTAATTTTAATTACATAAAAC
TTGTACTTGAAATATATCACATGATCACATTTGGAA

Coding sequence (CDS) from alignment at scaffold_243:229612..231847-

>TCONS_00054602 ID=TCONS_00054602|Name=TCONS_00054602|organism=Clytia hemisphaerica|type=CDS|length=1596bp|location=Sequence derived from alignment at scaffold_243:229612..231847- (Clytia hemisphaerica)
CCTGGGCAAACTGTGGTCAGAAGTCTCTGTACGACATGCACCTGTTTCAG
TGGTTCTATGATCTGTTATGAGGTTTGCATTGTTTAGACGGCTTATGCTC
TGAAGGAAGATTCCATTACATTGGTTGTAAAAGAACATGCGATAATGGGT
CAAGTTTTGTTTGTCCGCAAAAAGAATACGGATGTTGGTGTCCACAAGGT
TACGCTGAAAACGAAAAAGAAGAATGCGTTCCCCTTTCAAAATGTCCTTG
CAGAGTAGGCGACAAAGTTTACCAGGAGATGTATCACCATTGAGTGTTGA
TTGTGGCGAGCATCTGGATGATTACCACCTCAGTGTTGATTGCCTACATG
ACCATGCTGAGTGTTTTAGTTTTTACAATTGCAATTTTATTATCAGTAGC
CTGGGCAAACTGTGGTCAGAAGTCTCTGTACGACATGCACCTGTTTCAGT
GGTTCTATGATCTGTTATGAGGTTTGCATTGTTTAGACGGCTTATGCTCT
GAAGGAAGATTCCATTACATTGGTTGTAAAAGAACATGCGATAATGGGTC
AAGTTTTGTTTGTCCGCAAAAAGAATACGGATGTTGGTGTCCACAAGGTT
ACGCTGAAAACGAAAAAGAAGAATGCGTTCCCCTTTCAAAATGTCCTTGC
AGAGTAGGCGACAAAGTTTACCAGGAGATGTATCACCATTGAGTGTTGAT
TGTGGCGAGCATCTGGATGATTACCACCTCAGTGTTGATTGCCTACATGA
CCATGCTGAGTGTTTTAGTTTTTACAATTGCAATTTTATTATCAGTAGCC
TGGGCAAACTGTGGTCAGAAGTCTCTGTACGACATGCACCTGTTTCAGTG
GTTCTATGATCTGTTATGAGGTTTGCATTGTTTAGACGGCTTATGCTCTG
AAGGAAGATTCCATTACATTGGTTGTAAAAGAACATGCGATAATGGGTCA
AGTTTTGTTTGTCCGCAAAAAGAATACGGATGTTGGTGTCCACAAGGTTA
CGCTGAAAACGAAAAAGAAGAATGCGTTCCCCTTTCAAAATGTCCTTGCA
GAGTAGGCGACAAAGTTTACCAGGAGATGTATCACCATTGAGTGTTGATT
GTGGCGAGCATCTGGATGATTACCACCTCAGTGTTGATTGCCTACATGAC
CATGCTGAGTGTTTTAGTTTTTACAATTGCAATTTTATTATCAGTAGCCT
GGGCAAACTGTGGTCAGAAGTCTCTGTACGACATGCACCTGTTTCAGTGG
TTCTATGATCTGTTATGAGGTTTGCATTGTTTAGACGGCTTATGCTCTGA
AGGAAGATTCCATTACATTGGTTGTAAAAGAACATGCGATAATGGGTCAA
GTTTTGTTTGTCCGCAAAAAGAATACGGATGTTGGTGTCCACAAGGTTAC
GCTGAAAACGAAAAAGAAGAATGCGTTCCCCTTTCAAAATGTCCTTGCAG
AGTAGGCGACAAAGTTTACCAGGAGATGTATCACCATTGAGTGTTGATTG
TGGCGAGCATCTGGATGATTACCACCTCAGTGTTGATTGCCTACATGACC
ATGCTGAGTGTTTTAGTTTTTACAATTGCAATTTTATTATCAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034410XLOC_034410Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054602-exon-scaffold_243-1575043694:231692..231847TCONS_00054602-exon-scaffold_243-1575043694:231692..231847Clytia hemisphaericaexon
TCONS_00054602-exon-scaffold_243-1575043694:230972..231043TCONS_00054602-exon-scaffold_243-1575043694:230972..231043Clytia hemisphaericaexon
TCONS_00054602-exon-scaffold_243-1575043694:230197..230384TCONS_00054602-exon-scaffold_243-1575043694:230197..230384Clytia hemisphaericaexon
TCONS_00054602-exon-scaffold_243-1575043694:229612..229843TCONS_00054602-exon-scaffold_243-1575043694:229612..229843Clytia hemisphaericaexon
TCONS_00054602-exon-scaffold_243-1510915933:231692..231847TCONS_00054602-exon-scaffold_243-1510915933:231692..231847Clytia hemisphaericaexon
TCONS_00054602-exon-scaffold_243-1510915933:230972..231043TCONS_00054602-exon-scaffold_243-1510915933:230972..231043Clytia hemisphaericaexon
TCONS_00054602-exon-scaffold_243-1510915933:230197..230384TCONS_00054602-exon-scaffold_243-1510915933:230197..230384Clytia hemisphaericaexon
TCONS_00054602-exon-scaffold_243-1510915933:229612..229843TCONS_00054602-exon-scaffold_243-1510915933:229612..229843Clytia hemisphaericaexon
TCONS_00054602-exon-scaffold_243-1491911889:231692..231847TCONS_00054602-exon-scaffold_243-1491911889:231692..231847Clytia hemisphaericaexon
TCONS_00054602-exon-scaffold_243-1491911889:230972..231043TCONS_00054602-exon-scaffold_243-1491911889:230972..231043Clytia hemisphaericaexon
TCONS_00054602-exon-scaffold_243-1491911889:230197..230384TCONS_00054602-exon-scaffold_243-1491911889:230197..230384Clytia hemisphaericaexon
TCONS_00054602-exon-scaffold_243-1491911889:229612..229843TCONS_00054602-exon-scaffold_243-1491911889:229612..229843Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054602-proteinTCONS_00054602-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:229612..231847 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.108983	0	0.519502	0.680891	12.9392	4.89255	15.4746	18.2458	8.65334	8.98658	10.6463	8.17489	1.82002	2.86038	5.58402	4.76452	0	0	0.0926608	0.0842421	2.60302	2.47801	0.110813	0.473052	0.0896982	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002919TIL_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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