|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054527 ID=TCONS_00054527|Name=TCONS_00054527|organism=Clytia hemisphaerica|type=transcript|length=3265bp
tagaaaataggaTAAAATAATAgcaagcaaataaaaattcaagCTAGACA
TCTCATACAACCCCAGTGGggtgtcaattttttccaaatattgttTGATC
CCAGTATAGCTCTTCTCATATAAACACAAAGATTATCTTCAATACGTTAA
AATTATCCTAGGGAAACAGCatccctttttgaaaaattctcctATGTTCT
TCTGGTTGTCGAATTTCAGTATCTCGGCACaaaaaaaatgtcgaaaattt
gAAGAGAAAGAGCTTTTTTTCTTAAACTGGAAGGTTCTGGTGTCAGCTTC
ACAGCCTGTAGCGACAAAAAAGCACTATTAAAATCAGATTGTGTTCACAT
CTTCTCTTTTATACACTTTAAGGTGTCTATCATATTACAAAGAAAATATG
ACAAGAGTCAGTGTCATATTTGCAAAGCATTCTGGTCTCACGTGGTGGTT
TCGAATTGCATTTCCGATCGTGGTATAAATAGAACGAGTAGTGGGAGATT
TTGAAGCGNGGTTTCGAATTGCATTTCCGATCGTGGTATAAATAGAACGA
GTAGTAGGAGATTTTGAAGCATGGCGGCTTTGCTTCATCAAATCAAGAGT
TCTCTCTTTAACAAAATCATCGTGTGATTTCTCTACACCTTTGGATCAGT
TCTACACGTCATCGTCGACATTTTATCAACTGTTTCAAGAATATTTGACC
ATATATCTTTATCTTTAGTAAGGTGAGTGCTACAAGTATCTACTTTATAT
ACTCCTGTCAATCATTTGCTTAAACatgtaaaaagttttttaatttgata
atgGAAAAATGGATACAAATGCTGCtatgccattcaaatttcctcAGTGA
ATTAGGCaaatatttcttatttcttcacatatatactGTATCATAGCAAA
GCCCACTCTTTCCAcccaatctttaaaaattaaccaatttgACGCCAGTT
AGATTTCAATTGCTACGCTTTTCCCACGAGGTCTAGATAATTACTTTAGT
TGGGGGAAATAACTGAGgaaattctacttttaattATTTAACAAACTAAA
TTAAATAAATCATGACTATGATTTCCAGGTGATTTTCGAGCAAGATTATT
AGCCAAATGAAGTTGCATGAGCTTTTAAAGACCCATACAtaaatcataca
aaaacaaacaatacTTCTCATTCATTTTTATAGTCTGGGAAAATTACATC
ACAATGCCTCCAGTGACGAACGAAGGATCCAAATTGAGAAATGACACTCA
CACCAAGAAGAACTATGGATCCAATGAAGACATTGGAAGTTATCAAGAAT
CGAATGATGCCTACGTTGTCAAGGAGGATCGATACAACCTTggttattta
tcatttttcctGATCGGTATTGGAATGTTACTACCATGGAATTTCTTCAT
CAACGCTGACCAGTACTTTAAAAGCAAACTGAAAAACAATGAAAGTGATT
TGAAATTGTTCGAAAGTGCTTTTTCAATTTGCTCACAAATTCCATGCGGT
ATTGCATTGATTATCAATTTATGTTTGACAAATCGAGTTTCGAGGAACGG
TCGTGTCATTTCAACGTTGATCCTCTCGACAATCTGTTTCATTGTCACCA
CAGTACTGGTCAATGTGGATACTTCAGCNCATCAACCAGCAGTGGAGAAA
ACGATTGTACCGGTGAACAAAGCTTTTGTGCCGTCATTCGTAACATCTAT
CCGACAGCACTATCCGTCATGTGTGTTTTCGCCGTCACCTTGACTATCCA
ACCCGCCATTTTATCCGGTATTCGATCAGTCAATGAAAGCAATGGATCCG
CATTCACTAATAAATATTTCACGGCTGTTGTTGGATTCTTGATTTTCAAC
GTTGGTGATTTTGTTGGTCGAATCATCTCTGGTTTCGTTCGAATAGTTGA
TAAGAAAGGACCCTGGTTACCAATCCTCTGTGTTGCTCGAATTGCATTCA
TCCCACTGTTCATGTTCTGTAATTTCCAACCACGTCATCACTTAACAGTT
GTCTTCAATAAAGATATCTATCCTGTCATCTTTAATATCCTTTTCTCCGT
CAGTAATGGCTATCTCGCTAGTCTTTGTATGATGTACGGTCCGGAGCGTG
CACCTGAAGGGATGATGGAGACAGCAGGTGCAACCATGCAATTATTTTTG
ACAATCGGACTTGGTTTAGGATCAGTTTTATCCTTAGCTATTGTAGATAC
AATCTAATGATAGGCGTTATGATATTTGAGTCTttcagtacacgtttttt
ataagagcatcaaaagattttgaagattttgaatgCTCNGCAGTTGTCGG
TATGAGCTGTGCTGGAACCTTCGCCTCTATCACCAATATCATCTCCTTAG
CTGTTGGTGATGATATCAAATTAGATTCAACAATCTATTTCAGTATCGCT
TCTCTGGTTTTGTTCGCTTGCATCTTTGTCTACATTGGTATGTTTCGATT
ACCAGTGTTGAAAgataaatttgaaatcaaacttTATGATGATAAAATGT
CCAGTACTCCATCAACCAGCAGTGGAGAAAACGATTGTACCGGTGAACAA
AGCTTTTGTGCCGTCATTCGTAACATCTATCCGACAGCACTATCCGTCAT
GTGTGTTTTCGCCGTCACCTTGACTATCCAACCCGCCATTTTATCCGGTA
TTCGATCAGTCAATGAAAGCAATGGATCCGCATTCACTAATAAATATTTC
ACGGCTGTTGTTGGATTCTTGATTTTCAACGTTGGTGATTTTGTTGGTCG
AATCATCTCTGGTTTCGTTCGAATAGTTGATAAGAAAGGACCCTGGTTAC
CAATCCTCTGTGTTGCTCGAATTGCATTCATCCCACTGTTCATGTTCTGT
AATTTCCAACCACGTCATCACTTAACAGTTGTCTTCAATAAAGATATCTA
TCCTGTCATCTTTAATATCCTTTTCTCCGTCAGTAATGGCTATCTCGCTA
GTCTTTGTATGATGTACGGTCCGGAGCGTGCACCTGAAGGGATGATGGAG
ACAGCAGGTGCAACCATGCAATTATTTTTGACAATCGGACTTGGTTTAGG
ATCAGTTTTATCCTTAGCTATTGTAGATACAATCTAATGATAGGCGTTAT
GATATTTGAGTCTttcagtacacgttttttataagagcatcaaaagattt
tgaagattttgaatgctcttaactttttgagttctaagcctaaaaatgtt
cttaacatgttcttattttgactattttgtaataattttgacctgagaaa
tagggtgtttttgag Run BLAST on NCBI transcript from alignment at scaffold_243:305939..309203+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054527 ID=TCONS_00054527|Name=TCONS_00054527|organism=Clytia hemisphaerica|type=transcript|length=3265bp|location=Sequence derived from alignment at scaffold_243:305939..309203+ (Clytia hemisphaerica)
tagaaaataggaTAAAATAATAgcaagcaaataaaaattcaagCTAGACA
TCTCATACAACCCCAGTGGggtgtcaattttttccaaatattgttTGATC
CCAGTATAGCTCTTCTCATATAAACACAAAGATTATCTTCAATACGTTAA
AATTATCCTAGGGAAACAGCatccctttttgaaaaattctcctATGTTCT
TCTGGTTGTCGAATTTCAGTATCTCGGCACaaaaaaaatgtcgaaaattt
gAAGAGAAAGAGCTTTTTTTCTTAAACTGGAAGGTTCTGGTGTCAGCTTC
ACAGCCTGTAGCGACAAAAAAGCACTATTAAAATCAGATTGTGTTCACAT
CTTCTCTTTTATACACTTTAAGGTGTCTATCATATTACAAAGAAAATATG
ACAAGAGTCAGTGTCATATTTGCAAAGCATTCTGGTCTCACGTGGTGGTT
TCGAATTGCATTTCCGATCGTGGTATAAATAGAACGAGTAGTGGGAGATT
TTGAAGCGNGGTTTCGAATTGCATTTCCGATCGTGGTATAAATAGAACGA
GTAGTAGGAGATTTTGAAGCATGGCGGCTTTGCTTCATCAAATCAAGAGT
TCTCTCTTTAACAAAATCATCGTGTGATTTCTCTACACCTTTGGATCAGT
TCTACACGTCATCGTCGACATTTTATCAACTGTTTCAAGAATATTTGACC
ATATATCTTTATCTTTAGTAAGGTGAGTGCTACAAGTATCTACTTTATAT
ACTCCTGTCAATCATTTGCTTAAACatgtaaaaagttttttaatttgata
atgGAAAAATGGATACAAATGCTGCtatgccattcaaatttcctcAGTGA
ATTAGGCaaatatttcttatttcttcacatatatactGTATCATAGCAAA
GCCCACTCTTTCCAcccaatctttaaaaattaaccaatttgACGCCAGTT
AGATTTCAATTGCTACGCTTTTCCCACGAGGTCTAGATAATTACTTTAGT
TGGGGGAAATAACTGAGgaaattctacttttaattATTTAACAAACTAAA
TTAAATAAATCATGACTATGATTTCCAGGTGATTTTCGAGCAAGATTATT
AGCCAAATGAAGTTGCATGAGCTTTTAAAGACCCATACAtaaatcataca
aaaacaaacaatacTTCTCATTCATTTTTATAGTCTGGGAAAATTACATC
ACAATGCCTCCAGTGACGAACGAAGGATCCAAATTGAGAAATGACACTCA
CACCAAGAAGAACTATGGATCCAATGAAGACATTGGAAGTTATCAAGAAT
CGAATGATGCCTACGTTGTCAAGGAGGATCGATACAACCTTggttattta
tcatttttcctGATCGGTATTGGAATGTTACTACCATGGAATTTCTTCAT
CAACGCTGACCAGTACTTTAAAAGCAAACTGAAAAACAATGAAAGTGATT
TGAAATTGTTCGAAAGTGCTTTTTCAATTTGCTCACAAATTCCATGCGGT
ATTGCATTGATTATCAATTTATGTTTGACAAATCGAGTTTCGAGGAACGG
TCGTGTCATTTCAACGTTGATCCTCTCGACAATCTGTTTCATTGTCACCA
CAGTACTGGTCAATGTGGATACTTCAGCNCATCAACCAGCAGTGGAGAAA
ACGATTGTACCGGTGAACAAAGCTTTTGTGCCGTCATTCGTAACATCTAT
CCGACAGCACTATCCGTCATGTGTGTTTTCGCCGTCACCTTGACTATCCA
ACCCGCCATTTTATCCGGTATTCGATCAGTCAATGAAAGCAATGGATCCG
CATTCACTAATAAATATTTCACGGCTGTTGTTGGATTCTTGATTTTCAAC
GTTGGTGATTTTGTTGGTCGAATCATCTCTGGTTTCGTTCGAATAGTTGA
TAAGAAAGGACCCTGGTTACCAATCCTCTGTGTTGCTCGAATTGCATTCA
TCCCACTGTTCATGTTCTGTAATTTCCAACCACGTCATCACTTAACAGTT
GTCTTCAATAAAGATATCTATCCTGTCATCTTTAATATCCTTTTCTCCGT
CAGTAATGGCTATCTCGCTAGTCTTTGTATGATGTACGGTCCGGAGCGTG
CACCTGAAGGGATGATGGAGACAGCAGGTGCAACCATGCAATTATTTTTG
ACAATCGGACTTGGTTTAGGATCAGTTTTATCCTTAGCTATTGTAGATAC
AATCTAATGATAGGCGTTATGATATTTGAGTCTttcagtacacgtttttt
ataagagcatcaaaagattttgaagattttgaatgCTCNGCAGTTGTCGG
TATGAGCTGTGCTGGAACCTTCGCCTCTATCACCAATATCATCTCCTTAG
CTGTTGGTGATGATATCAAATTAGATTCAACAATCTATTTCAGTATCGCT
TCTCTGGTTTTGTTCGCTTGCATCTTTGTCTACATTGGTATGTTTCGATT
ACCAGTGTTGAAAgataaatttgaaatcaaacttTATGATGATAAAATGT
CCAGTACTCCATCAACCAGCAGTGGAGAAAACGATTGTACCGGTGAACAA
AGCTTTTGTGCCGTCATTCGTAACATCTATCCGACAGCACTATCCGTCAT
GTGTGTTTTCGCCGTCACCTTGACTATCCAACCCGCCATTTTATCCGGTA
TTCGATCAGTCAATGAAAGCAATGGATCCGCATTCACTAATAAATATTTC
ACGGCTGTTGTTGGATTCTTGATTTTCAACGTTGGTGATTTTGTTGGTCG
AATCATCTCTGGTTTCGTTCGAATAGTTGATAAGAAAGGACCCTGGTTAC
CAATCCTCTGTGTTGCTCGAATTGCATTCATCCCACTGTTCATGTTCTGT
AATTTCCAACCACGTCATCACTTAACAGTTGTCTTCAATAAAGATATCTA
TCCTGTCATCTTTAATATCCTTTTCTCCGTCAGTAATGGCTATCTCGCTA
GTCTTTGTATGATGTACGGTCCGGAGCGTGCACCTGAAGGGATGATGGAG
ACAGCAGGTGCAACCATGCAATTATTTTTGACAATCGGACTTGGTTTAGG
ATCAGTTTTATCCTTAGCTATTGTAGATACAATCTAATGATAGGCGTTAT
GATATTTGAGTCTttcagtacacgttttttataagagcatcaaaagattt
tgaagattttgaatgctcttaactttttgagttctaagcctaaaaatgtt
cttaacatgttcttattttgactattttgtaataattttgacctgagaaa
tagggtgtttttgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054527-exon-scaffold_243-1491911889:305939..309203 | TCONS_00054527-exon-scaffold_243-1491911889:305939..309203 | Clytia hemisphaerica | exon |
| TCONS_00054527-exon-scaffold_243-1510915933:305939..309203 | TCONS_00054527-exon-scaffold_243-1510915933:305939..309203 | Clytia hemisphaerica | exon |
| TCONS_00054527-exon-scaffold_243-1575043694:305939..309203 | TCONS_00054527-exon-scaffold_243-1575043694:305939..309203 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:305939..309203 + |
Blast
BLAST of TCONS_00054527 vs. Swiss-Prot (Human)
Match: S29A1 (Equilibrative nucleoside transporter 1 OS=Homo sapiens GN=SLC29A1 PE=1 SV=3) HSP 1 Score: 152.14 bits (383), Expect = 1.021e-38 Identity = 96/273 (35.16%), Postives = 144/273 (52.75%), Query Frame = 1
Query: 2299 GMSCAGTFASITNIISLAVGDDIKLDSTIYFSIASLVLFACIFVYIGMFRLPVLKDKFEIKLYD--DKMSSTPSTSSGENDCTGEQ----------------SFCAVIRNIYPTALSVMCVFAVTLTIQPAILSGIRSVNESNGSAFTNKYFTAVVGFLIFNVGDFVGRIISGFVRIVDKKGPWLPILCVARIAFIPLFMFCNFQPRHHLTVVFNKDIYPVIFNILFSVSNGYLASLCMMYGPERAPEGMMETAGATMQLFLTIGLGLGSVLS 3063
G AG FAS+ I ++A G ++ + YF A V+ I Y+G+ RL + ++KL ++ + S GE G++ S A+++NI A SV +F +T+ + PA+ ++S GS+ +YF V FL FN+ D++GR ++ K WLP L +AR+ F+PL + CN +PR +LTVVF D + + F F+ SNGYLASLCM +GP++ ETAGA M FL +GL LG+V S
Sbjct: 179 GQGLAGFFASVAMICAIASGSELSESAFGYFITACAVIILTIICYLGLPRLEFYRYYQQLKLEGPGEQETKLDLISKGEEPRAGKEESGVSVSNSQPTNESHSIKAILKNISVLAFSVCFIFTITIGMFPAVTVEVKS--SIAGSSTWERYFIPVSCFLTFNIFDWLGRSLTAVFMWPGKDSRWLPSLVLARLVFVPLLLLCNIKPRRYLTVVFEHDAWFIFFMAAFAFSNGYLASLCMCFGPKKVKPAEAETAGAIMAFFLCLGLALGAVFS 449 HSP 2 Score: 132.494 bits (332), Expect = 2.600e-32 Identity = 76/186 (40.86%), Postives = 108/186 (58.06%), Query Frame = 3
Query: 1626 SXSTSSGENDCTGEQSFCAVIRNIYPTALSVMCVFAVTLTIQPAILSGIRSVNESNGSAFTNKYFTAVVGFLIFNVGDFVGRIISGFVRIVDKKGPWLPILCVARIAFIPLFMFCNFQPRHHLTVVFNKDIYPVIFNILFSVSNGYLASLCMMYGPERAPEGMMETAGATMQLFLTIGLGLGSVLS 2183
S S S N+ S A+++NI A SV +F +T+ + PA+ ++S GS+ +YF V FL FN+ D++GR ++ K WLP L +AR+ F+PL + CN +PR +LTVVF D + + F F+ SNGYLASLCM +GP++ ETAGA M FL +GL LG+V S
Sbjct: 269 SVSNSQPTNE---SHSIKAILKNISVLAFSVCFIFTITIGMFPAVTVEVKS--SIAGSSTWERYFIPVSCFLTFNIFDWLGRSLTAVFMWPGKDSRWLPSLVLARLVFVPLLLLCNIKPRRYLTVVFEHDAWFIFFMAAFAFSNGYLASLCMCFGPKKVKPAEAETAGAIMAFFLCLGLALGAVFS 449
The following BLAST results are available for this feature:
|
