TCONS_00054649 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054649
Unique NameTCONS_00054649
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054649 ID=TCONS_00054649|Name=TCONS_00054649|organism=Clytia hemisphaerica|type=transcript|length=3526bp
cttttttgttgcatagcgtaaaataactttttatacaTCCGTTCTACTTC
ATTAGTTTCACGCACTTTCCACAGCTTTGTTGATACCGATAATATGAAAA
TGTAACTCGGACGGGggtcatgaaattttggttaaataTATTAAACTGTT
GTGTATTGAGTTGTAAAGCTTTTCCAGCTAACACCTCAAAACCCGTTAAG
TCTTTTCACAATTGAATTAATTTGAATCTGATAATTTAAAGCGCAAAATG
ATTCGATAAGTTTTAGCCCCCTTTAATCGAATCCaacgaaaaaaaaacta
taaatagTTTGAACACTTTACTTGTGTtacaaatcaaatcaaagaatTGA
TGATTGGCCTTGAGACGTAAACAGTATCCGACAAGATGGCTTCCGTGAAG
GGAATGTTTTTATTTCTATGCATTGTTGCTTCAGTTACAAAGAATCTAAA
TGctACTGTAAGCTTGGTACCTCACACGAAAGGAAATGATTTTTGTGGGA
CAAACTATGATGGCGGCTATCATTACATCATTCGGTCTGACCTTGGTGTT
TTTATGagAGCTGGATCATTAACAGGAAGTCCGAGTACGAAGATTTATAA
ATTGTGTGAAGCGTGCAAAGGAGCAGACCATTACTTGGCGATCCCCGGGG
GCAAATACTATATCATCAAGGGAAATCAATATCGAAAGAATCGAGGATTG
GAAAGTGATAGAGATTCAAGAGTTTACAATCTACATCCAAATTGTCGTGG
TGGAAAACATTATTTTGGTGGAACGGACCACCACAAATACATAATATTCA
GCGATAACACATATCGTAGAGTGGTTGACATGACACATGATAGCCAAGCT
AGAACATTTAAACTCCATCCCAACTGCCAAGgTGGTTTATACTATTGGGC
ACGCGAAGGCTGGAAATACTTTGTGAAACAAGGACATTGGGGTATCGAAT
ATCATCGAGTTTCAGATTTAACGCGAGATCTTCTACATACTTCCTATTCA
GTCGCTAAACCAGTTATTGGTTTCCTTCCTGGTGGTTTGGCTGTGAATTA
CGGGCCTGTGTATGGTCAATGGACGTTGATCAAATCATTCAGAAACCCGT
CTTCTTCTGATGTTGAATACAAAAAGACGATCACAAAGAAAGTTGGTTAC
AACAAACAGAAGCTATCATCGACTGAACATAGCTGGAGTATCTCTGCTTC
TGTTACAACGTCTGCTGGCGCGTTGACTGAATCGATTGCTAAAACTCAAA
TGACTTTAACTGCTGCGTATGGAGGCTTAAAGATTGATACAACAACACAA
AACTGGAGTAAAGAAACTGAAACAACGGAAGAAATCACTATCACATTGAA
AGCCGGTCAATCCGTGTATTTCTGGCAATATCAAATCGGGTTAGGAACAG
ATACTGGACATCCTGTACTCTTCGGAAAGAACTTGGTGACCAATAATTCT
GGACGACCACCTAAAGAACCTGGATACACTACTAAAGCGTAAACAATCAA
CAAAGAGAGAGGGCGTCAGTCAAttggggcgtttattcaaaacAACCTTC
ATTTTTGGAGTCGATTACTCAAAATATTACCGTAATTATTGatttgttat
ttatttattacAGTTGGCTCTCACCCCGGGGGGGGGAGaggcactccagg
taagtgacctaccggacgtgcggcccttaaggctaggttttttggacttt
ggaaagtgcactgtaagggttgatttgtgagcaagtgggaaaaagtgcac
tgtaagggtgtaagatttgagaaaataccaaatttcgaggtaaactttga
gaaatttcaaaagattttgccctgaaaagggcaaaaaatttcgaaaaatt
gcactgtagcaagggtcgattttcagccaaatttttcctgcactgtaagg
gtccgattttagagactTGATTTTTgaccgaacgtacggtcgttttcaaa
atcgagtgccccctccccccggggCTCTCACTAACTCGGACGAGGAATCT
TACTTTGTTCAAataacagaaagattcgaattataaagaGTATATTAAAA
GAGGGCTTCTTCCTAACTGGAACTGAGAATAAGTTCGGATTATAGAAAAA
GATTtaaataatagaaattcgaaTAAGCGAGGGTCAACTGTATCTAttta
tatttgaatttatttatttgagtCTAGTCTAGTCTTTGTTTTTATGAAGA
TAATTCTTTGGAGAAAATCTTTCCACCTTGACTAAGTTTCTTTTACTGTA
ATTAGTGGATAAACTATTTAATTCTTATTTCCTCAAATGTGtttaaaagt
ctttaaaaacgtctttaaaatgtttttaaggaTCGAATGGTCAAGCCATC
GGCGCCTCAAACAATTGTTCCCGGTTCGAAttcccgctccttccaatgtt
ccgtttaGTTCAAAGATAGACAAGCCGGCTGGctgtggaccccgtgaaaa
caatcgaaagactacCTAAAAGTCTTCAAAGTCTTacattactgggctat
ccacgttaaATGTCGActcttttaaaatattcaaattcaTGAGGGTTGAC
CTGTGTTACGTTACAAGAGAAATACTACTACAAGTAAAGAAAATTCTAAA
TCATCTCCGAAGttgtcaaaaagaaaatttatttgaaaaaatcaccaatt
tttAGTTCATGTTTTAgtaattttcatgtattttggTCTTCCCCATTCAA
CAAATTAaatcaatcattcaaaaaattatataatatcTGAATAGGATTAA
ATGTCTTTGAAGTGGGACGGGATAAATTTTGGAACGTTCCCTTAAAAATG
AACACATGAGCACATTGTAAATATGTACAAAAAGATATGAAATAAACTGa
gggaaatgaaaattttggcaAGCATCTTGTTAAAGATCTCAATATGTCAA
GATTAAATCATCAATAAACCAAACCTTAAAAGGGAAAAATTTGTCGTGGA
AAAGTGACCGATATTTTAAGGCTAGTGACGGAGTTTTCCCCGGCGGAAAA
TCTTTCTGATCAACTTTAAGGAAGTTGTGacaaaaatttttacaaaagtg
ATAAGGTCTTTCCCTTTTTAATTTTCCCTTTTAAGGTATTCATTCATTCG
TGAAATTGTCACACACTACTTAAGGTAGAGGTGATCAGGAATTTACAAGG
TTACATATATAGCGCTATTTTACAAATACCATTaaatcaaaaaatgtagt
caaaTGTTTACAATACAAAAACGTTTTACGGTTTATCAAAAATAATATGT
TAGAAATAATATGGTAACCAAAAAAATGATCTTGACTGAAATTCAACCAT
CACTGTTTAACAGTGGTGGTTTGTTGGACAGAGTACGCAGGTGGTTGTTG
AGTTTGATAGACAACACCTCCTTGTGGCTGGTTCTAAAAAGGACAAAGAG
CAAAGAAATGACTTAGTAATTACAAAATATAATAGGTTCAAGATATATAG
TAGAAGTGCTGCACCCAATATGCGGGATAACCCAGTTGGGATGAATTTTG
ACTTTGGCTCTTTAGAAAGATACGAG
Run BLAST on NCBI

protein sequence of TCONS_00054649-protein

>TCONS_00054649-protein ID=TCONS_00054649-protein|Name=TCONS_00054649-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MASVKGMFLFLCIVASVTKNLNATVSLVPHTKGNDFCGTNYDGGYHYIIR
SDLGVFMRAGSLTGSPSTKIYKLCEACKGADHYLAIPGGKYYIIKGNQYR
KNRGLESDRDSRVYNLHPNCRGGKHYFGGTDHHKYIIFSDNTYRRVVDMT
HDSQARTFKLHPNCQGGLYYWAREGWKYFVKQGHWGIEYHRVSDLTRDLL
HTSYSVAKPVIGFLPGGLAVNYGPVYGQWTLIKSFRNPSSSDVEYKKTIT
KKVGYNKQKLSSTEHSWSISASVTTSAGALTESIAKTQMTLTAAYGGLKI
DTTTQNWSKETETTEEITITLKAGQSVYFWQYQIGLGTDTGHPVLFGKNL
VTNNSGRPPKEPGYTTKA
Run BLAST on NCBI

transcript from alignment at scaffold_243:487788..502771-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054649 ID=TCONS_00054649|Name=TCONS_00054649|organism=Clytia hemisphaerica|type=transcript|length=14984bp|location=Sequence derived from alignment at scaffold_243:487788..502771- (Clytia hemisphaerica)
CTTTTTTGTTGCATAGCGTAAAATAACTTTTTATACATCCGTTCTACTTC
ATTAGTTTCACGCACTTTCCACAGCTTTGTTGATACCGATAATATGAAAA
TGTAACTCGGACGGGGGTCATGAAATTTTGGTTAAATATATTAAACTGTT
GTGTATTGAGTTGTAAAGCTTTTCCAGCTAACACCTCAAAACCCGTTAAG
TCTTTTCACAATTGAATTAATTTGAATCTGATAATTTAAAGCGCAAAATG
ATTCGATAAGTTTTAGCCCCCTTTAATCGAATCCAACGAAAAAAAAACTA
TAAATAGTTTGAACACTTTACTTGTGTTACAAATCAAATCAAAGAATTGA
TGATTGGCCTTGAGACGTAAACAGTATCCGACAAGATGGCTTCCGTGAAG
GGAATGTTTTTATTTCTATGCATTGTTGCTTCAGTTACAAAGAATCTAAA
TGGTATGTTATCTTCTCGATTTTTTCTTTTTTTCTTTACACTGCTCATTT
AAGCAACTGCGAGTTTTTTCATGAAATAAGAAGTGCTTTTTCATCATTCT
CTAACGTTGCCGTAGAAGTTTCTTGAGATAAAGTTGACGCTCTCCTATTC
GATAGGCTCCCTCCCTTTAAATGAAATTTAAAGTCTCCGTCAACAAGAAA
CTCTCACAAACGACGTCTCCTATTCGATAGGCTCCCTCCCTTTAAATNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNCATCAACAAGAAACTCTCACAAACG
ACGTCTCCTATTCGATAGGCTCCCTCCCTTTAAATGAAATTTAAAGTCTC
CGTCAACAAGAAACTCTCACAAACGACGTCTCTTATGCGATAAGCTCCCT
CCCTTTAAATGAAATTTAAAGTCTCCGTCAACAAGAAACTCTCATAAACG
ACGTCTCTTATTCGATAAGCTCACTTATTCGATAAAAATCTAATTCCCCT
TGAAGATCGAATTAGAGAGCGTCAACTGTACTTGAATATTTGGCCGAAAT
GGGTTCTCGTATTCCTATTAAATGGTTCTCGTGGAAACTTCATTGATTGT
AAAATCTTTTTTCAGCTACTGTAAGCTTGGTACCTCACACGAAAGGAAAT
GATTTTTGTGGGACAAACTATGATGGCGGCTATCATTACATCATTCGGTC
TGACCTTGGTGTTTTTATGAGGTAAAACTTTTTTTTAGTTTTATTATCAT
AGATCTTATACCCTTTTACATGTTTTACACTTTTTGAGAAGTAAATATTA
ACTTGAAAAGCATTCTTTACGTGTTACGACTGCAGACCATAGCTTTCTAC
CCGATAGCAGGCGAGGTCTCTTTCTTTCTGCTCTACTTACCCTTGATCCT
TCTCTTTCGAAGTCTTTGGTATGGCCTGACTAAAGATTGAACCCACGACC
TATCGCATCGTTGCCGAAAGCTCTACCTTTTGTACTACGCTTCGCTTCAT
TTACTTTTAACTTTGTAGCCGGTCTCTACTTCAATATTAGTCCGTTACTC
TTGTTTCCTGAATAGACGGGGGGATTCGAATAAGCAGGGGGTGTAGGAAA
ATTTTCTAAATTTTAATAAGAACCAATACTAACAAAAAGGANNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCCCCCCCCCCCCCGGGACT
GTACTTCAAAGCACTTAAAAATCACTTGCAGTTTTAAAGATTTGAAGGAA
TTCCCCTTTTTTTGCCAAATATTTCGGCGCTGATTGTAGCGGTTTGAAAA
ACGATAAATTACGCATGCGTATAAGTCTCTATTTGGGTGAGCTGGAAACA
TTAGATGAACTCATAATGAGGTAATTTGTTTCAGAGCTGGATCATTAACA
GGAAGTCCGAGTACGAAGATTTATAAATTGTGTGAAGCGTGCAAAGGAGC
AGACCATTACTTGGCGATCCCCGGGGGCAAATACTATATCATCAAGGGAA
ATCAATATCGAAAGGTAAGTGTTTTTTTAACGGTAACGATAAAAGCACCT
AAAATTTAGCGTCATCAAAACTTTAGTGTGAACTAAGATGTGACAACAGT
AATATTACAAAACACTTTCGCTAAATAATTTTTTCGTGGTGCGACCTAAA
GTTTAAAGTTTATGGCCTTGTGTAACATATTACCCTGCCTCGCTGACTTC
CAATTTCAACATTAGCAATTCTCAACTAAAAAACTTACTAAACAAAGAGA
AGTCAATCTGTATCATGCAACCTAATCCTTCCCAAATTAAAGGCTTTGGT
CATAGTGAAAAATCAATATCAGAATTTGAAGATAAAACCTTATTTTTCGC
TTCTTTGACATGTTTAAGAACAGAGGAGTGTAAAGAGATGGAAAAACGGC
TCGTCATATACCAGGTCTCTTGCCCTTAAGGGAATTTATGTCGAGTAAAT
AGGTTTCTTTTGTTGTGGCTATAAAAAATCTACATAATTAGAGTGTTGTG
ACGAAATTCTTTTGCTTCAAGCCTGAAAAGCTCGAGAAAATTATAACTTC
ATCTTGATTTCTTGATGGCACACTTTTCATTTTTTGAAAATTTTGATTTT
TGAGGCCTGGGACGAGTTTTTCCCCAAAACGAGGCTAAAACTTTGGGGCA
GCCTGGAGACTTCAAAAATTGTCGGATTTGGCTGAAATTTGGCACACTTG
TTCCTTGGGTGAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNTTCAAACTTTTTTTAAGTTAATGATAAATAATTTAT
TTAAATTTTCTCGGAAAAATTTTCTATTTGGCCACATCCCAAGTTATAGC
TGTTTTTGTATAGAAATTTAATGGAGAAAATTGCCAAAAATGAGGTTTTT
TGGAGATTTTAAAGGAAAGATACTTCCACAAAAATTTTCCGAAATTGTAT
TTTTAGATACTAAATAGATACACCATCTGAACCAAAAAAATTCCAAAATG
TTTGATTTTTACCGAGATTAGGGCTTTGAAAGGTGAAATACTCTTCTTCG
AAAAACTCTTCGTTTTCTTCTTCATTTAATTTTTTCATTTCAATTTTTCG
ATTTTTAAATTCTAAAAAGGTAGGTTTACCAGGACATACAAAAAAAGTTA
TACATTAATCTTTTTAAAATGCAGAAATTGCCATTTAAATTGGTGAAAAA
TCTAAAAATTGTCCAGAGCCCTTAATAGATTAGTAAAAGTAAGTAAGTAT
ATTCATATGGTGGCTGTCGGCGGAGCCGGGAGTGAGGGAGTCTATCCCCT
TTTCTATTTGCGCTAGACCTGGGAGATCGAATGCTGAGGTGGAGCGCCCC
ACCTACTCTCAGCTCCAGTAACTTACCGCCTAAATCAGATTACCCAATCT
AAGCTACTCATCCGCTGAGTCGGCGGTGACTGGGGATCGAACCCACAAAC
CTTAGATTGTAAGGCGAATGCTTTACCGACTGAGCTACCCGGCATCTAAT
GGATTATTATCTGCTAATTGTATGTATATACTCTTAGAATCGAGGATTGG
AAAGTGATAGAGATTCAAGAGTTTACAATCTACATCCAAATTGTCGTGGT
GGAAAACATTATTTTGGTGGAACGGACCACCACAAATACATAATATTCAG
CGATAACACATATCGTAGAGTGGTTGACATGACACATGATAGCCAAGCTA
GAACATTTAAACTCCATCCCAACTGCCAAGGTAATGATATGTATTGTACA
CTCTTATCTTGGACCTGATGTATAATTTTCTTCTGACATAGTAAAGCTCT
GAAGTTAAGGTAATCAACGTCTTCTCCGATGGAAATTGACCCGCTCCTTT
AAAGGTTTATTGTGATCGGCCGCCAATCTACTCTGTACCAAAGTGTATCT
CACGTTTATCACTTCGCAGTACACTCTGTGCGCAGTGTCTGTTTGATAAA
AAAATTCCCGTATGGAGAGCTCTGCGATGAAGTATGTCTTATAAATAGCA
ATACTTCTCTCATCGTGTCCCTTCTCTCACGAACGCTCCATCGCAGCGGT
CGGTTTGAAAAATCTCAAACGAGAAAAAACAATGACAACAGACCCTCTAT
GGCAATGAATTTTGAAATAAGCCGTAGATACTGGGTTTGTGTACAGACAA
CCGCCAATCCGCCGTCGGAATATCAGATAAAGCAGACACTCCACTCTTTA
GAAGTATCATTTTTTCCGAATCGGCTTTATAAAGGCTTTCTGCCTACATG
TAATTATGTTGTGTAACGTGTATTCTTCTTACTGTTAAAAAAATCATTGA
TTTTTATACAATTGTACAATTTTTTTAAGGTGGTTTATACTATTGGGCAC
GCGAAGGCTGGAAATACTTTGTGAAACAAGGACATTGGGGTATCGAATAT
CATCGAGTTTCAGATTTAACGCGAGATCTTCTACATACTTCCTATTCAGT
CGCTAAACCAGTTATTGGTTTCCTTCCTGGTGGTTTGGCTGTGAATTACG
GGCCTGTGTATGGTCAATGGACGTTGATCAAATCATTCAGAAACCCGTCT
TCTTCTGATGTAATTTTACTAGTTTTTAATGCGCTCTTCCAGAAACTTTC
GTACGCTAAGGATGTCCGATATATTGTAAAGATTTCAGTGCCCCATCCCA
TAATTTTGCTAGTTTTTAATGCGCTCTTCCAGAAACTTTCGTACGCTAAG
GATGTCCGATATATTGTAAAGATTTCAGTGCCCCATCCCATAATTTTGCT
AGTTTTTAATGCGCTTTCCCAAAAAACTTCCGTAATTTATTACTTTCTTT
TTTTCGCAAGAGCCTAATTCATTTCCTGCAAGAAATTCTTTCATTAAACT
GGACAGTCCCACTTATCTTCTGCACGCTAACAGAAGCATAAAATATTTTT
TAAGACCTGTAATCAAATCTTTAACCATTTACATCATTCTAAATCATCAT
CCAGCCTTGCTTGGGTACTTTTTAGACGGTGACCTCTTAAATTTTAAAAA
CATTGTTTCTAGGTTGAATACAAAAAGACGATCACAAAGAAAGTTGGTTA
CAACAAACAGAAGCTATCATCGACTGAACATAGCTGGAGTATCTCTGCTT
CTGTTACAACGTCTGCTGGCGCGTTGACTGAATCGATTGCTAAAACTCAA
ATGACTTTAACTGCTGCGTATGGAGGCTTAAAGGTGGGTTGAAAAGCAAG
GGGTAACCAGATAAAAGATAAAATTCAACCAAAAGATTCCTTCTATAGCC
CTTAACAGAACCTCCAAATTTTACCGGCTTCTTGTTTTTCAAAGTCAAGA
TATATAGGTTTGATATTTTAAGTTTTTGCTTGAAAACAATAGAATGAAGG
TATGTGTGAAGTGCGAAAATCTGAGATTTTAAATCGTCATTATCTTGGTT
ACAGAATGTCATTTGGAAATATTTGGTGGTCTTAAGAAGGACCATGGAAG
GAATCTTTGAGCAAAGTTTTACTTTTCATCTGGTTATCCCTTTAAACGTG
TTTTCAATTGTTTATTAGTTTTTTTTTTATTTATGATGCAATCACCCTGC
AATCAGGCTCCTAAAAATCGGAAGAGCGGCATAATTGCCGTTTTGTATGA
TTTATTGTAAAAATATGCTCAATTTAGGCTATTTAGATTAAATTATTTTT
TCCACAATTTTATAAATGAAGGGGTCTTCGGAGTATTTATTCGGGGCTTT
TTAAACATTTTCGGGTCTTAGAACGTAAATTATGATCTATACTGGACAAA
TTTTGAAAGCTCGAAATATAGTGGAGTCTCCATAATTCGAACATGCACAG
GAAACAAACATTTGTTCGAGTTAAGGAAGTCTCGAGTTATAGTTAACTTA
ATAAGGTCTACAAGGCATTGTTAACTGAAGAGACCGAGTTGAGGAGACGT
TCCAGTTATAGAGACTCTACTTTATCTTCTATCGATTTAGATTGATACAA
CAACACAAAACTGGAGTAAAGAAACTGAAACAACGGAAGAAATCACTATC
ACATTGAAAGCCGGTCAATCCGTGTATTTCTGGCAATATCAAATCGGGTT
AGGAACAGATACTGGACATCCTGTACTCTTCGGAAAGAACTTGGTGACCA
ATAATTCTGGACGACCACCTAAAGAACCTGGATACACTACTAAAGCGTAA
ACAATCAACAAAGAGAGAGGGCGTCAGTCAATTGGGGCGTTTATTCAAAA
CAACCTTCATTTTTGGAGTCGATTACTCAAAATATTACCGTAATTATTGA
TTTGTTATTTATTTATTACAGTTGGCTCTCACCCCGGGGGGGGGAGAGGC
ACTCCAGGTAAGTGACCTACCGGACGTGCGGCCCTTAAGGCTAGGTTTTT
TGGACTTTGGAAAGTGCACTGTAAGGGTTGATTTGTGAGCAAGTGGGAAA
AAGTGCACTGTAAGGGTGTAAGATTTGAGAAAATACCAAATTTCGAGGTA
AACTTTGAGAAATTTCAAAAGATTTTGCCCTGAAAAGGGCAAAAAATTTC
GAAAAATTGCACTGTAGCAAGGGTCGATTTTCAGCCAAATTTTTCCTGCA
CTGTAAGGGTCCGATTTTAGAGACTTGATTTTTGACCGAACGTACGGTCG
TTTTCAAAATCGAGTGCCCCCTCCCCCCGGGGCTCTCACTAACTCGGACG
AGGAATCTTACTTTGTTCAAATAACAGAAAGATTCGAATTATAAAGAGTA
TATTAAAAGAGGGCTTCTTCCTAACTGGAACTGAGAATAAGTTCGGATTA
TAGAAAAAGATTTAAATAATAGAAATTCGAATAAGCGAGGGTCAACTGTA
TCTATTTATATTTGAATTTATTTATTTGAGTCTAGTCTAGTCTTTGTTTT
TATGAAGATAATTCTTTGGAGAAAATCTTTCCACCTTGACTAAGTTTCTT
TTACTGTAATTAGTGGATAAACTATTTAATTCTTATTTCCTCAAATGTGT
TTAAAAGTCTTTAAAAACGTCTTTAAAATGTTTTTAAGGATCGAATGGTC
AAGCCATCGGCGCCTCAAACAATTGTTCCCGGTTCGAATTCCCGCTCCTT
CCAATGTTCCGTTTAGTTCAAAGATAGACAAGCCGGCTGGCTGTGGACCC
CGTGAAAACAATCGAAAGACTACCTAAAAGTCTTCAAAGTCTTACATTAC
TGGGCTATCCACGTTAAATGTCGACTCTTTTAAAATATTCAAATTCATGA
GGGTTGACCTGTGTTACGTTACAAGAGAAATACTACTACAAGTAAAGAAA
ATTCTAAATCATCTCCGAAGTTGTCAAAAAGAAAATTTATTTGAAAAAAT
CACCAATTTTTAGTTCATGTTTTAGTAATTTTCATGTATTTTGGTCTTCC
CCATTCAACAAATTAAATCAATCATTCAAAAAATTATATAATATCTGAAT
AGGATTAAATGTCTTTGAAGTGGGACGGGATAAATTTTGGAACGTTCCCT
TAAAAATGAACACATGAGCACATTGTAAATATGTACAAAAAGATATGAAA
TAAACTGAGGGAAATGAAAATTTTGGCAAGCATCTTGTTAAAGATCTCAA
TATGTCAAGATTAAATCATCAATAAACCAAACCTTAAAAGGGAAAAATTT
GTCGTGGAAAAGTGACCGATATTTTAAGGCTAGTGACGGAGTTTTCCCCG
GCGGAAAATCTTTCTGATCAACTTTAAGGAAGTTGTGACAAAAATTTTTA
CAAAAGTGATAAGGTCTTTCCCTTTTTAATTTTCCCTTTTAAGGTATTCA
TTCATTCGTGAAATTGTCACACACTACTTAAGGTAGAGGTGATCAGGAAT
TTACAAGGTTACATATATAGCGCTATTTTACAAATACCATTAAATCAAAA
AATGTAGTCAAATGTTTACAATACAAAAACGTTTTACGGTTTATCAAAAA
TAATATGTTAGAAATAATATGGTAACCAAAAAAATGATCTTGACTGAAAT
TCAACCATCACTGTTTAACAGTGGTGGTTTGTTGGACAGAGTACGCAGGT
GGTTGTTGAGTTTGATAGACAACACCTCCTTGTGGCTGGTTCTAAAAAGG
ACAAAGAGCAAAGAAATGACTTAGTAATTACAAAATATAATAGGTTCAAG
ATATATAGTAGAAGTGCTGCACCCAATATGCGGGATAACCCAGTTGGGAT
GAATTTTGACTTTGGCTCTTTAGAAAGATACGAG

Coding sequence (CDS) from alignment at scaffold_243:487788..502771-

>TCONS_00054649 ID=TCONS_00054649|Name=TCONS_00054649|organism=Clytia hemisphaerica|type=CDS|length=7749bp|location=Sequence derived from alignment at scaffold_243:487788..502771- (Clytia hemisphaerica)
ATTGATACAACAACACAAAACTGGAGTAAAGAAACTGAAACAACGGAAGA
AATCACTATCACATTGAAAGCCGGTCAATCCGTGTATTTCTGGCAATATC
AAATCGGGTTAGGAACAGATACTGGACATCCTGTACTCTTCGGAAAGAAC
TTGGTGACCAATAATTCTGGACGACCACCTAAAGAACCTGGATACACTAC
TAAAGCGTAAGTTGAATACAAAAAGACGATCACAAAGAAAGTTGGTTACA
ACAAACAGAAGCTATCATCGACTGAACATAGCTGGAGTATCTCTGCTTCT
GTTACAACGTCTGCTGGCGCGTTGACTGAATCGATTGCTAAAACTCAAAT
GACTTTAACTGCTGCGTATGGAGGCTTAAAGGTGGTTTATACTATTGGGC
ACGCGAAGGCTGGAAATACTTTGTGAAACAAGGACATTGGGGTATCGAAT
ATCATCGAGTTTCAGATTTAACGCGAGATCTTCTACATACTTCCTATTCA
GTCGCTAAACCAGTTATTGGTTTCCTTCCTGGTGGTTTGGCTGTGAATTA
CGGGCCTGTGTATGGTCAATGGACGTTGATCAAATCATTCAGAAACCCGT
CTTCTTCTGATAATCGAGGATTGGAAAGTGATAGAGATTCAAGAGTTTAC
AATCTACATCCAAATTGTCGTGGTGGAAAACATTATTTTGGTGGAACGGA
CCACCACAAATACATAATATTCAGCGATAACACATATCGTAGAGTGGTTG
ACATGACACATGATAGCCAAGCTAGAACATTTAAACTCCATCCCAACTGC
CAAGAGCTGGATCATTAACAGGAAGTCCGAGTACGAAGATTTATAAATTG
TGTGAAGCGTGCAAAGGAGCAGACCATTACTTGGCGATCCCCGGGGGCAA
ATACTATATCATCAAGGGAAATCAATATCGAAAGCTACTGTAAGCTTGGT
ACCTCACACGAAAGGAAATGATTTTTGTGGGACAAACTATGATGGCGGCT
ATCATTACATCATTCGGTCTGACCTTGGTGTTTTTATGAGATGGCTTCCG
TGAAGGGAATGTTTTTATTTCTATGCATTGTTGCTTCAGTTACAAAGAAT
CTAAATGATTGATACAACAACACAAAACTGGAGTAAAGAAACTGAAACAA
CGGAAGAAATCACTATCACATTGAAAGCCGGTCAATCCGTGTATTTCTGG
CAATATCAAATCGGGTTAGGAACAGATACTGGACATCCTGTACTCTTCGG
AAAGAACTTGGTGACCAATAATTCTGGACGACCACCTAAAGAACCTGGAT
ACACTACTAAAGCGTAAGTTGAATACAAAAAGACGATCACAAAGAAAGTT
GGTTACAACAAACAGAAGCTATCATCGACTGAACATAGCTGGAGTATCTC
TGCTTCTGTTACAACGTCTGCTGGCGCGTTGACTGAATCGATTGCTAAAA
CTCAAATGACTTTAACTGCTGCGTATGGAGGCTTAAAGGTGGTTTATACT
ATTGGGCACGCGAAGGCTGGAAATACTTTGTGAAACAAGGACATTGGGGT
ATCGAATATCATCGAGTTTCAGATTTAACGCGAGATCTTCTACATACTTC
CTATTCAGTCGCTAAACCAGTTATTGGTTTCCTTCCTGGTGGTTTGGCTG
TGAATTACGGGCCTGTGTATGGTCAATGGACGTTGATCAAATCATTCAGA
AACCCGTCTTCTTCTGATAATCGAGGATTGGAAAGTGATAGAGATTCAAG
AGTTTACAATCTACATCCAAATTGTCGTGGTGGAAAACATTATTTTGGTG
GAACGGACCACCACAAATACATAATATTCAGCGATAACACATATCGTAGA
GTGGTTGACATGACACATGATAGCCAAGCTAGAACATTTAAACTCCATCC
CAACTGCCAAGAGCTGGATCATTAACAGGAAGTCCGAGTACGAAGATTTA
TAAATTGTGTGAAGCGTGCAAAGGAGCAGACCATTACTTGGCGATCCCCG
GGGGCAAATACTATATCATCAAGGGAAATCAATATCGAAAGCTACTGTAA
GCTTGGTACCTCACACGAAAGGAAATGATTTTTGTGGGACAAACTATGAT
GGCGGCTATCATTACATCATTCGGTCTGACCTTGGTGTTTTTATGAGATG
GCTTCCGTGAAGGGAATGTTTTTATTTCTATGCATTGTTGCTTCAGTTAC
AAAGAATCTAAATGATTGATACAACAACACAAAACTGGAGTAAAGAAACT
GAAACAACGGAAGAAATCACTATCACATTGAAAGCCGGTCAATCCGTGTA
TTTCTGGCAATATCAAATCGGGTTAGGAACAGATACTGGACATCCTGTAC
TCTTCGGAAAGAACTTGGTGACCAATAATTCTGGACGACCACCTAAAGAA
CCTGGATACACTACTAAAGCGTAAGTTGAATACAAAAAGACGATCACAAA
GAAAGTTGGTTACAACAAACAGAAGCTATCATCGACTGAACATAGCTGGA
GTATCTCTGCTTCTGTTACAACGTCTGCTGGCGCGTTGACTGAATCGATT
GCTAAAACTCAAATGACTTTAACTGCTGCGTATGGAGGCTTAAAGGTGGT
TTATACTATTGGGCACGCGAAGGCTGGAAATACTTTGTGAAACAAGGACA
TTGGGGTATCGAATATCATCGAGTTTCAGATTTAACGCGAGATCTTCTAC
ATACTTCCTATTCAGTCGCTAAACCAGTTATTGGTTTCCTTCCTGGTGGT
TTGGCTGTGAATTACGGGCCTGTGTATGGTCAATGGACGTTGATCAAATC
ATTCAGAAACCCGTCTTCTTCTGATAATCGAGGATTGGAAAGTGATAGAG
ATTCAAGAGTTTACAATCTACATCCAAATTGTCGTGGTGGAAAACATTAT
TTTGGTGGAACGGACCACCACAAATACATAATATTCAGCGATAACACATA
TCGTAGAGTGGTTGACATGACACATGATAGCCAAGCTAGAACATTTAAAC
TCCATCCCAACTGCCAAGAGCTGGATCATTAACAGGAAGTCCGAGTACGA
AGATTTATAAATTGTGTGAAGCGTGCAAAGGAGCAGACCATTACTTGGCG
ATCCCCGGGGGCAAATACTATATCATCAAGGGAAATCAATATCGAAAGCT
ACTGTAAGCTTGGTACCTCACACGAAAGGAAATGATTTTTGTGGGACAAA
CTATGATGGCGGCTATCATTACATCATTCGGTCTGACCTTGGTGTTTTTA
TGAGATGGCTTCCGTGAAGGGAATGTTTTTATTTCTATGCATTGTTGCTT
CAGTTACAAAGAATCTAAATGATTGATACAACAACACAAAACTGGAGTAA
AGAAACTGAAACAACGGAAGAAATCACTATCACATTGAAAGCCGGTCAAT
CCGTGTATTTCTGGCAATATCAAATCGGGTTAGGAACAGATACTGGACAT
CCTGTACTCTTCGGAAAGAACTTGGTGACCAATAATTCTGGACGACCACC
TAAAGAACCTGGATACACTACTAAAGCGTAAGTTGAATACAAAAAGACGA
TCACAAAGAAAGTTGGTTACAACAAACAGAAGCTATCATCGACTGAACAT
AGCTGGAGTATCTCTGCTTCTGTTACAACGTCTGCTGGCGCGTTGACTGA
ATCGATTGCTAAAACTCAAATGACTTTAACTGCTGCGTATGGAGGCTTAA
AGGTGGTTTATACTATTGGGCACGCGAAGGCTGGAAATACTTTGTGAAAC
AAGGACATTGGGGTATCGAATATCATCGAGTTTCAGATTTAACGCGAGAT
CTTCTACATACTTCCTATTCAGTCGCTAAACCAGTTATTGGTTTCCTTCC
TGGTGGTTTGGCTGTGAATTACGGGCCTGTGTATGGTCAATGGACGTTGA
TCAAATCATTCAGAAACCCGTCTTCTTCTGATAATCGAGGATTGGAAAGT
GATAGAGATTCAAGAGTTTACAATCTACATCCAAATTGTCGTGGTGGAAA
ACATTATTTTGGTGGAACGGACCACCACAAATACATAATATTCAGCGATA
ACACATATCGTAGAGTGGTTGACATGACACATGATAGCCAAGCTAGAACA
TTTAAACTCCATCCCAACTGCCAAGAGCTGGATCATTAACAGGAAGTCCG
AGTACGAAGATTTATAAATTGTGTGAAGCGTGCAAAGGAGCAGACCATTA
CTTGGCGATCCCCGGGGGCAAATACTATATCATCAAGGGAAATCAATATC
GAAAGCTACTGTAAGCTTGGTACCTCACACGAAAGGAAATGATTTTTGTG
GGACAAACTATGATGGCGGCTATCATTACATCATTCGGTCTGACCTTGGT
GTTTTTATGAGATGGCTTCCGTGAAGGGAATGTTTTTATTTCTATGCATT
GTTGCTTCAGTTACAAAGAATCTAAATGATTGATACAACAACACAAAACT
GGAGTAAAGAAACTGAAACAACGGAAGAAATCACTATCACATTGAAAGCC
GGTCAATCCGTGTATTTCTGGCAATATCAAATCGGGTTAGGAACAGATAC
TGGACATCCTGTACTCTTCGGAAAGAACTTGGTGACCAATAATTCTGGAC
GACCACCTAAAGAACCTGGATACACTACTAAAGCGTAAGTTGAATACAAA
AAGACGATCACAAAGAAAGTTGGTTACAACAAACAGAAGCTATCATCGAC
TGAACATAGCTGGAGTATCTCTGCTTCTGTTACAACGTCTGCTGGCGCGT
TGACTGAATCGATTGCTAAAACTCAAATGACTTTAACTGCTGCGTATGGA
GGCTTAAAGGTGGTTTATACTATTGGGCACGCGAAGGCTGGAAATACTTT
GTGAAACAAGGACATTGGGGTATCGAATATCATCGAGTTTCAGATTTAAC
GCGAGATCTTCTACATACTTCCTATTCAGTCGCTAAACCAGTTATTGGTT
TCCTTCCTGGTGGTTTGGCTGTGAATTACGGGCCTGTGTATGGTCAATGG
ACGTTGATCAAATCATTCAGAAACCCGTCTTCTTCTGATAATCGAGGATT
GGAAAGTGATAGAGATTCAAGAGTTTACAATCTACATCCAAATTGTCGTG
GTGGAAAACATTATTTTGGTGGAACGGACCACCACAAATACATAATATTC
AGCGATAACACATATCGTAGAGTGGTTGACATGACACATGATAGCCAAGC
TAGAACATTTAAACTCCATCCCAACTGCCAAGAGCTGGATCATTAACAGG
AAGTCCGAGTACGAAGATTTATAAATTGTGTGAAGCGTGCAAAGGAGCAG
ACCATTACTTGGCGATCCCCGGGGGCAAATACTATATCATCAAGGGAAAT
CAATATCGAAAGCTACTGTAAGCTTGGTACCTCACACGAAAGGAAATGAT
TTTTGTGGGACAAACTATGATGGCGGCTATCATTACATCATTCGGTCTGA
CCTTGGTGTTTTTATGAGATGGCTTCCGTGAAGGGAATGTTTTTATTTCT
ATGCATTGTTGCTTCAGTTACAAAGAATCTAAATGATTGATACAACAACA
CAAAACTGGAGTAAAGAAACTGAAACAACGGAAGAAATCACTATCACATT
GAAAGCCGGTCAATCCGTGTATTTCTGGCAATATCAAATCGGGTTAGGAA
CAGATACTGGACATCCTGTACTCTTCGGAAAGAACTTGGTGACCAATAAT
TCTGGACGACCACCTAAAGAACCTGGATACACTACTAAAGCGTAAGTTGA
ATACAAAAAGACGATCACAAAGAAAGTTGGTTACAACAAACAGAAGCTAT
CATCGACTGAACATAGCTGGAGTATCTCTGCTTCTGTTACAACGTCTGCT
GGCGCGTTGACTGAATCGATTGCTAAAACTCAAATGACTTTAACTGCTGC
GTATGGAGGCTTAAAGGTGGTTTATACTATTGGGCACGCGAAGGCTGGAA
ATACTTTGTGAAACAAGGACATTGGGGTATCGAATATCATCGAGTTTCAG
ATTTAACGCGAGATCTTCTACATACTTCCTATTCAGTCGCTAAACCAGTT
ATTGGTTTCCTTCCTGGTGGTTTGGCTGTGAATTACGGGCCTGTGTATGG
TCAATGGACGTTGATCAAATCATTCAGAAACCCGTCTTCTTCTGATAATC
GAGGATTGGAAAGTGATAGAGATTCAAGAGTTTACAATCTACATCCAAAT
TGTCGTGGTGGAAAACATTATTTTGGTGGAACGGACCACCACAAATACAT
AATATTCAGCGATAACACATATCGTAGAGTGGTTGACATGACACATGATA
GCCAAGCTAGAACATTTAAACTCCATCCCAACTGCCAAGAGCTGGATCAT
TAACAGGAAGTCCGAGTACGAAGATTTATAAATTGTGTGAAGCGTGCAAA
GGAGCAGACCATTACTTGGCGATCCCCGGGGGCAAATACTATATCATCAA
GGGAAATCAATATCGAAAGCTACTGTAAGCTTGGTACCTCACACGAAAGG
AAATGATTTTTGTGGGACAAACTATGATGGCGGCTATCATTACATCATTC
GGTCTGACCTTGGTGTTTTTATGAGATGGCTTCCGTGAAGGGAATGTTTT
TATTTCTATGCATTGTTGCTTCAGTTACAAAGAATCTAAATGATTGATAC
AACAACACAAAACTGGAGTAAAGAAACTGAAACAACGGAAGAAATCACTA
TCACATTGAAAGCCGGTCAATCCGTGTATTTCTGGCAATATCAAATCGGG
TTAGGAACAGATACTGGACATCCTGTACTCTTCGGAAAGAACTTGGTGAC
CAATAATTCTGGACGACCACCTAAAGAACCTGGATACACTACTAAAGCGT
AAGTTGAATACAAAAAGACGATCACAAAGAAAGTTGGTTACAACAAACAG
AAGCTATCATCGACTGAACATAGCTGGAGTATCTCTGCTTCTGTTACAAC
GTCTGCTGGCGCGTTGACTGAATCGATTGCTAAAACTCAAATGACTTTAA
CTGCTGCGTATGGAGGCTTAAAGGTGGTTTATACTATTGGGCACGCGAAG
GCTGGAAATACTTTGTGAAACAAGGACATTGGGGTATCGAATATCATCGA
GTTTCAGATTTAACGCGAGATCTTCTACATACTTCCTATTCAGTCGCTAA
ACCAGTTATTGGTTTCCTTCCTGGTGGTTTGGCTGTGAATTACGGGCCTG
TGTATGGTCAATGGACGTTGATCAAATCATTCAGAAACCCGTCTTCTTCT
GATAATCGAGGATTGGAAAGTGATAGAGATTCAAGAGTTTACAATCTACA
TCCAAATTGTCGTGGTGGAAAACATTATTTTGGTGGAACGGACCACCACA
AATACATAATATTCAGCGATAACACATATCGTAGAGTGGTTGACATGACA
CATGATAGCCAAGCTAGAACATTTAAACTCCATCCCAACTGCCAAGAGCT
GGATCATTAACAGGAAGTCCGAGTACGAAGATTTATAAATTGTGTGAAGC
GTGCAAAGGAGCAGACCATTACTTGGCGATCCCCGGGGGCAAATACTATA
TCATCAAGGGAAATCAATATCGAAAGCTACTGTAAGCTTGGTACCTCACA
CGAAAGGAAATGATTTTTGTGGGACAAACTATGATGGCGGCTATCATTAC
ATCATTCGGTCTGACCTTGGTGTTTTTATGAGATGGCTTCCGTGAAGGGA
ATGTTTTTATTTCTATGCATTGTTGCTTCAGTTACAAAGAATCTAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034423XLOC_034423Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054649-proteinTCONS_00054649-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054649-exon-scaffold_243-1575043694:502320..502771TCONS_00054649-exon-scaffold_243-1575043694:502320..502771Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1575043694:499151..499256TCONS_00054649-exon-scaffold_243-1575043694:499151..499256Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1575043694:495308..495437TCONS_00054649-exon-scaffold_243-1575043694:495308..495437Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1575043694:492242..492434TCONS_00054649-exon-scaffold_243-1575043694:492242..492434Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1575043694:491413..491642TCONS_00054649-exon-scaffold_243-1575043694:491413..491642Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1575043694:490789..490959TCONS_00054649-exon-scaffold_243-1575043694:490789..490959Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1575043694:487788..490031TCONS_00054649-exon-scaffold_243-1575043694:487788..490031Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1510915933:502320..502771TCONS_00054649-exon-scaffold_243-1510915933:502320..502771Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1510915933:499151..499256TCONS_00054649-exon-scaffold_243-1510915933:499151..499256Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1510915933:495308..495437TCONS_00054649-exon-scaffold_243-1510915933:495308..495437Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1510915933:492242..492434TCONS_00054649-exon-scaffold_243-1510915933:492242..492434Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1510915933:491413..491642TCONS_00054649-exon-scaffold_243-1510915933:491413..491642Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1510915933:490789..490959TCONS_00054649-exon-scaffold_243-1510915933:490789..490959Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1510915933:487788..490031TCONS_00054649-exon-scaffold_243-1510915933:487788..490031Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1491911889:502320..502771TCONS_00054649-exon-scaffold_243-1491911889:502320..502771Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1491911889:499151..499256TCONS_00054649-exon-scaffold_243-1491911889:499151..499256Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1491911889:495308..495437TCONS_00054649-exon-scaffold_243-1491911889:495308..495437Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1491911889:492242..492434TCONS_00054649-exon-scaffold_243-1491911889:492242..492434Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1491911889:491413..491642TCONS_00054649-exon-scaffold_243-1491911889:491413..491642Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1491911889:490789..490959TCONS_00054649-exon-scaffold_243-1491911889:490789..490959Clytia hemisphaericaexon
TCONS_00054649-exon-scaffold_243-1491911889:487788..490031TCONS_00054649-exon-scaffold_243-1491911889:487788..490031Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:487788..502771 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.584045	0.407406	0.395266	0.379413	1.34331	0.778357	59.5992	60.8085	154.677	153.563	231.777	267.184	50.7819	38.5007	9.39764	9.87196	175.82	131.344	55.1333	54.3655	62.9669	57.6242	26.2003	36.5929	36.9027	32.4273	4.5588	1.28045	0.190098	0.168158
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028988CEL-III_C
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054649 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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