TCONS_00054564 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054564
Unique Name	TCONS_00054564
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1442

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_243:652329..661983+
coding sequence from alignment at scaffold_243:652329..661983+

transcript sequence

>TCONS_00054564 ID=TCONS_00054564|Name=TCONS_00054564|organism=Clytia hemisphaerica|type=transcript|length=1442bp
CTTACCACCATGCTACTGCCTCTAAATATGTAGTTTCAATTTACTAATGT
ACGTTCCACTGTTCATCAGTTGTTTCCTTTTTTACGTGCTCCAGAAAGAA
AGAGAATTAGAAGAACTCACAGAGCGTATCGGCCAACTAACAACGAATGA
TGGTCAAAATCGTTCAATAGTGGTTAATCGAATGtatcaagaaaaaataa
aatgtctcGATCAAGAAATTGCTAAAAAGAATGAGATTTTGAAGGAGATC
AAATCACACATCAGAGGTTGTGCTGAACGAGAAGCTCAATTGTTGAGAGA
TATTGATGAACTCAAAGAAAAGgttgaatttttgcaaaattttccgAATG
GGGTTGAGAATGAAAATGACGCTCTTGCAGCTTTACAACAAAGCAGACTT
CGTGTGCGGACATTAGAATGTGAAAAAGAGGAACTGGTGAACGAGCTGAA
ACGTCTTCGAGAGCTGACCAATGACGGTGAAGAAAAAATAGacgtgACTC
AAGATGAAATCATCaagaagttgaaaaattatgataaaatgtTAGCTTTG
GAAGTTGACTTGAGGACTCGCATCAAGTCAATGGAAATTGAAAAGGAGAG
ACTTTCTAAAGAGAATAACAAGcTGAAAAAGGAATTGGATTCGTTCGACC
CAGCATTCTTCGACGAGCTAGAGGATCTCAAATACAATTATCAGAAATCT
CTTACAAAGAACTCGCTCTTGGAAAAGCAATTGATTGATTTGTCAGAGCA
ACTTGGTATTGATGTCAACATTCCACCCTAATTATCAACATATGTATTAA
CCCTGATGGGAACGTCACCTTACCTGCGCACTGGATGGAACTTTAGTAAG
TGCACGAATATTATATTGTTGATTATAAACACCGATTCTTTCACCCTCGA
ATACACTTACGGGAACAATATGGAAACATGCATCTCCACTGATACAAGCC
TTTTTATAGGATTCGTCTCCTTTTCAGggcaagattttttgaaatttctc
aaatattacctcggtattttctcaaattttacaccgttacagtgcacttt
ttcccacttgctcacaaatcaacccttacagtgcactttccaaagtccaa
aaaacctacccttaagggttGCCCCCCCCCCCCGGGCCTTTATGTAAAGT
TTAGAGGTCATAAAAATGCAAATTCTTTTCGATTTGGGTATTTCCAAAAC
TGATATTGATAATGTTTTTTAAAAACTTGTAATATAGATGTATGAAAAAA
GATTTTACTAAAAAATGTGATATATTTATGGAAAATTTTGAAAGATTTTT
AAAATTTAGAAGAAATATTGAAATTTGAAAAGCATATGGCGGCTGACAGC
CCACAACATATTTTATCCTTTATTTTCTCGTACGAAATTATATCTTGTGT
ATTTAAAATTTGGTGTCTAATTAAATAAGGAGGAGACTGAAC

Run BLAST on NCBI

protein sequence of TCONS_00054564-protein

>TCONS_00054564-protein ID=TCONS_00054564-protein|Name=TCONS_00054564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MYVPLFISCFLFYVLQKERELEELTERIGQLTTNDGQNRSIVVNRMYQEK
IKCLDQEIAKKNEILKEIKSHIRGCAEREAQLLRDIDELKEKVEFLQNFP
NGVENENDALAALQQSRLRVRTLECEKEELVNELKRLRELTNDGEEKIDV
TQDEIIKKLKNYDKMLALEVDLRTRIKSMEIEKERLSKENNKLKKELDSF
DPAFFDELEDLKYNYQKSLTKNSLLEKQLIDLSEQLGIDVNIPP

Run BLAST on NCBI

transcript from alignment at scaffold_243:652329..661983+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054564 ID=TCONS_00054564|Name=TCONS_00054564|organism=Clytia hemisphaerica|type=transcript|length=9655bp|location=Sequence derived from alignment at scaffold_243:652329..661983+ (Clytia hemisphaerica)
CTTACCACCATGCTACTGCCTCTAAATATGTAGTTTCAATTTACTAATGT
ACGTTCCACTGTTCATCAGTTGTTTCCTTTTTTACGTGCTCCAGAAAGAA
AGAGAATTAGAAGAACTCACAGAGCGTATCGGCCAACTAACAACGAATGA
TGGTCAAAATCGTTCAATAGTGGTTAATCGAATGtatcaagaaaaaataa
aatgtctcGATCAAGAAATTGCTAAAAAGGTTTGTTGTCTGTGATAAACA
AAATGTAGCGCATGTGTAGTACCATCTTGAtgggggagtttctaaacatc
gaccagaaatggcgaccagataaatttgggttatcgagtttatctgctct
ctccaccgtagagaaagtcctcagaatactaaaaagtgacctttgaagta
accagtcattttcttgataaattgacacgatttgacaaaatattgacagg
gccaTTAAGTATGATGTCTCTAAGTTTTGTTACACCGAATATTTTAATCA
TGCTGAATGGGATGCCTtcagtatgaatagatagaacttgtcagtaggaa
aaaattgggaaggccagttttagagatatcaatctAATCAAtcattctat
tgtctttatgctgacaaaatgactatCTGATGAttaaatacaaagcttct
caaaccaatttcaaaaaatgttatgccgctaattattttgatgctgataa
tacaaaaggatagaaattgacaccataatcgagctccaagagcgtcgaaa
tggttgttttaTGCATAGGGAATGTGGCTCTAAATAGAtcagacaggggt
gagcttactcttcaatatgATATATTCAAATGATAAGGAGAGACAATCTA
CGTTGGTGAACAAGAAAaaactcgataatccaaatttatctggtcgctgt
aTTTTCAGTATACactattttttattagaacaactttataagaacaatga
ggttCACAAATGCCAAAAAAATTAGAGCATTAAGAACAAAAGCCTATCCA
AAACTTAAGGTATAGAGCCTCGCATTAAAATCCTACGGTATGAATTTTCG
TGTTTGGATTTTGTACTTTGTATATTGTCAAATATAAAGGGAGGGCAAAC
TGGGATCTAAAACTGACACTTCTGTATCAGTGAACCAGTGAGTTCGGCCA
CGGTGGGTAACCcagtgaaaaaaattataaaaatggcCTAATTTTAAGCC
CCGTTGGGATGATGAGTTAACCCGGTCAAATTTTATCGAAATTCCCTACC
CCTGTCAAAACTTGGAAATTCATTGTCTTACCAGGTCTCACTCACTCCGG
TCAAAATTCGTATTATATTATTTATATTATTTCTTTCTGGAATTCTTATA
CCTGTCATGAAAAATATGGAATTTGAAGGAGATAATCGCTGAATAAAAGT
TCAGTAAACTTTCTGGAAATAGGAAACTTTCATCTTGACATTTTGAAACT
CCCAAATATTTGTGCTCGCTCCGCTTGGAACTAAATCTTTAAATTACGTT
CATTCTGATAATTCTCATTTCGTTGTATTCGTCAACATGACCTTTAAATA
ACTGTTaaggaaaaactgaaaactttcCTAATGGATGAAAATGTCTGGAA
GATATTGGGTATTTCGCAAGAATGtctggaaaattttttaatattttcag
gtcaaaaatctggaaaaatgTGCCTTTTGAGATAAAAAGTTTGGGATTTT
CAACTTGGCAAACGCGTAGGAATCCTGAATAAGGTCAACGcggtcaaata
aaaaaaaaaattaataaatctaGTAAAGCCAATGCTTtcaattgacaatt
ttttctctTCGCCGGTGAAAATCGAGTTAAAAATTCTCACTCAGTTCGTT
TTTGAGATCTCAAATTCAAACCCggttaagtttatttttttacaaagccA
ACCCGGTGGATTTCAAAACATCACTGGGTCACTGACACAGCAGTGTAAAC
TGGTGATTACAATGAGaatattctttttatttctcattttcttcctcctc
tttctcttttttggtttcgaattttgcaataaaagtaAAGCAGATTAGTC
ATTTTACAACTTATATAACCTGCAAGTATCATTTAACTTTTGTACCTACC
TAAATCGAGCAAGGCTCTTTAGAGAATGAGGGAAgaatgaaaaatgagaa
aatatacTAGGTAAATGAAAATATCCTCCACACCCCcgccccctagtaga
tactttctgaccattCCCTTCGAAACCGAGTGGGATAAAGACGTTGAATA
ATAACCTTATTAGATTGCTACTAAGTAGGATAAGACTTACTCTATTGTAA
TCTCGCCCAACAAAAGTCGACCTTCTTTAATAGTAGTTTTCCCTCCCCTT
GCCTTTGCTTGAAGGGAAAGAAATGAATCAAGAAAAGCTTTTCTTTCTTt
agatttctttttcgaaacaATTATAACTGTTTCACTAGCAAATACCTTTT
CAACGAGCAAAAAATCGTAATCTAATTCAAATGCCACGAAATATATCTAT
TATAAAATTTAGTGGTTGGTcgaaatattttagattttgtaaTGTTTGCc
gtaatttttctaatttaactgaaCTTAGCGAAATTAGCTAATCAAACTTC
TACACGTGCATGTGTACTGTCAGCGCATCCTTGTTCAACGAGGTCAACAA
CCCATTAATTTTAACAAGGCTTATGTCATCCTTTTTCCGAAAATATTGAT
CCTCGTATAGATTAGATTATTTATGTCCAAACTTTAACTtcgacttagaa
tttttttcggTAGATAAACATCAAGACAGACTTGGCCCAATTATACTCTT
CTTTCTTTAAGAATGAGATTTTGAAGGAGATCAAATCACACATCAGAGGT
TGTGCTGAACGAGAAGCTCAATTGTTGAGAGATATTGATGAACTCAAAGA
AAAGGTGAGAACATTTCTGTTAAAGCTTCCAAAAACAAAACCTACCCTAT
TTAGCTAAGGCTACACTTATAAGGTTGCGTGAAAAATTCACCAATGTAAC
CAGGCGGTAAATGCCACTTTCAACCAAGCATTTGTATAGAACTTCGTGTG
CAACTTATTTAAGAAATAATTTACTTCAAATCACTAAATAAGAGATTCGG
CTGTATCTCTTTTGTTGTTTCTTAATCTTGAGAAAAGTGTTTATTTACTT
ACGTACTTACCTAATGTAGTTCTTTAACTAGGGGGTAATTGATTTCATAA
GTAGTGATAGTTGCACAATTGACAATAGGTGTCTACAAACCATACTCAAC
ACTCTCACGAGTATTTCAAGCTGAGTTTCTTACTTTATCTACCTACATTC
ACAATGACATACTTGTCTGAACAGATGGGTGTTGTCAGTACTAAATTCTC
AGACATCTTGACGTTTGGTGACGTGGAAAAAAACTCTGAAATCTTTGCAT
TACCTTGGGGTATCCAAACGAAATGGGTATCCAGGACGACAAATTTGAGA
AACCTTTTAGTACATTGGTACTAAATtaatgtttttcataatttctgaat
aattttcagaatttgtccAGTTATTTTTGCATTAGAGAACTAAGACTTCG
TGAAAACGAAcacaaaattaaaagtttttggttCGTCTTTAAGCACTCTT
TTTAACTGTAATTTCACCTTCATGCACATTTAAAGATATCTATTGAATCG
TAGgttgaatttttgcaaaattttccgAATGGGGTTGAGAATGAAAATGA
CGCTCTTGCAGCTTTACAACAAAGCAGGTATGTTGTCTCTTAGACCACGT
TCACACGTAACGGTTCTGTTTCACTCCGAAACAAAATCAAgctattctat
tggttaaagTCGAGGTTTACGTCATTTCTAATCAGTAGAATGGCTCCATT
TCATTTCGAAGCAGAACAGAACCGCTACGTGCGAACATAGTCTTAATTCT
ACTCAAAATGCATTAAGGGTATCGACGTGAAGGCAATAAAtatgttgaaa
aaaattttacgaccatgaaaaaaaagagatttcTGGCACCAAATTTCTGC
TTAATCATTTTCTTCgcattttccaagaaaagttTCTTATGCTTTGACAA
TTAAAGGAATAACATTAAAGTCTATAATTCTTTTCTTTCGTATACAGACT
TCGTGTGCGGACATTAGAATGTGAAAAAGAGGAACTGGTGAACGAGCTGA
AACGTCTTCGAGAGCTGACCAATGACGGTGAAGAAAAAATAGacgtggta
aaatttcaaaatgctcATTAAGggataatacacctttcccgaatttattt
cgactttttgaaaaacgCTATTCCGAAACCCTACTCTACTTGCATTTAAT
TTAGAAAGATTCTACTACGAAAtgcaaaatcagcaaaaagaaGAATTATG
TTAAAAGCTCTCCCggttcttgaaatatttcaattttaagcTTCAAAAGT
ATATAGTTCTCGTTTCAATTTGGAGAGCTCGaattcgcgtggataaattt
tggcgatCTTCAATATTTTCGACCATAACGCGGGCTTTTTTGTTCTGATT
ATTTgattttaacactgcaatgtttttgcAAGCTCAGTATTTATTTCATA
GCGATTCAGACCTCCATTTAAATGGTAACAATAACCTAAATGACAAACAA
TACAAATGAGATAACAAAATGTCCCTATCTCTTCCTTAGACTCAAGATGA
AATCATCaagaagttgaaaaattatgataaaatgtTAGCTTTGGAAGTTG
ACTTGAGGTATTATTATATTATGATaattaccagtggataccccttaaaa
ccacataccccttaaaacctacaaagttaCACTTTGGGCTCTCTTAGCCA
CCATACTTAatttaatattgtataattcacttttttacaacctcttataa
atgtaatataaattaatataaattattttataatataaatttcataaaaa
acttatATATAtacttaaaaagttatacaatttttttcatcaaaaatccC
TTTAACAATCCAAGTTTTTcggacctagagattacacaattgaatttaag
gtcataaaacctttaggtacctatacttatggtatgaaaaaatcattttc
ttcttcatggtTAGACCCCAAAGAAATCGTTAGTCCCTCAAATTTGCATA
GCTTTCCTAGGGTATGTAGATATCGTAGATTTATTAATTTAAATGTTATT
TTTAAGGACTCGCATCAAGTCAATGGAAATTGAAAAGGAGAGACTTTCTA
AAGAGAATAACAAGGTATGATTTTGATTAAATAAACTCTAAGTAGGCCGA
AAATTGAGGGACAATATTCACGCAAATGCAATAAAGATTGATccaaatta
atttgattctaCGGTTCCCGGGATAAAAATGAGGATAGCTTTTTCCATCT
TCAGTCGTGAGTTTTTCCCTCGCGATGGTACCTAGAACTAATAAACTGAG
GTAGttatactacctgtggttttgtagatgTCTGCTATTCAGACTAATGG
TAACCGCAAAAACTCTGTTAAAACTCTTGCTTTGGTACAAAAAATAAGGG
AAAAATTGGACACGaggcgaaaattaaaaaaatgtagtgtttccggaatg
cgggtgaaggaaaaaagctctcatgcggccggccggaaaatttttttttt
gttatttttgataacttttgatcattgaaatagaactttaaagataactt
ttatgtacaaacagtatgaagtaagccctgaatactagtgtatcaactac
taacgaacaaaacttgatttacaagcgggaatatctaactaaacgacgtt
tgataccttgaacggtcaacttgattttccttatgatgaaccatatagat
gaacccatagtctgcgacCGGGtcagaaagtttttctttttcacccgGCT
GGTTTCTGGAAACactgcatttttttattttcgcccaagaaataatgttt
ttattatGACTAAGATgttgttttgttattttgttattttcccATTTAGA
AAATAGAGACTTACCACCTCTGCAATGTGTAAATGTGTTTCATTTTCTAT
CAACTATTAGCACTTTTTCATGTTTAAGTCCCAAACATGAAAGTTGTTGT
TTTGGATCAGTGCATATATTTTATAGGCATCAACTAATATTTCGAGCTTC
GAGatatttgttgactttttagtctaaagtgaaagaaaaatacagcaaaa
tcaataaatattttaccatttttcaattAGCCATTTCTACTCTGGGATTG
TATTGAGCACTCAATTTCACTTAGTCTTAGAGTTATCCAGGGAATTCGGG
TTAAACTATAACAAAATGTCacaacacgttttttataagaacatccaaaa
ttttttaaaccttcggatgttcttaactttttgggtttcaagccgcctaa
aaatgttcttattttcaccatttttacctactttcctgagaaattggctg
ttttagagtccacaaaagCTTAAACATTATATTAACAATTGATTGATTAG
ATCGGTCAAAGTGAATGTAAAGACACAGAGTCACTTAAAGTCCTCCATCA
AACGTAGATCCTAAatatttgcttaaaatttgtttttgttttttggacct
acctctgGGGTCCTTTCCcggtcctttaaattaatctTTGTTCGCTCGTC
GGTTCGGCCGTTCTGTTACCggctttctgttttttttctttttttgcata
gtgatgcaaaatgaaAGTACCAAAAAAGTGACGGGgctcgattttcaaaa
aaagaattttggcaaattttggcTTAATGCATACAATATTTTAACCTGtg
tacagtggaacctctaattagcgtaCACCATCGGGggagaagtgtccgcc
ttttagaaacttttgatttcggagctccaattttgaaattaggccatccc
agggtgtcgaaaatacaaaattggggtctaaagtacttatctgcagacac
taggNNAGAATAATATCTCACTTTGGCTACTTCATCATCTATTCAGATtc
cctttgttaaaagtgattattggtcgtaaaaacagtttctcaaaatctga
tgcGTGGATAGATTGCTCTTTATAAGGGTATTTTTTCTCAGTtatgaaat
ttttagttttggaaaacgattgatatttacaaatctattttagcttacaa
tctggaattttaggagctgaaatttagtgattccatcgattttaactcct
aaaattaaaaaatcaattttactcTATACGGAAAGaataactactgtaat
ttaggtgaaaacttgacacccaaatttcttttcttagaagtgcgttttca
aatagttttcaacactggtgaatctataaaatgagctgatttcaaatatg
taattCTTATTTGCATTGAGGGGACCGAAGTGCCCGAAAttttcagttga
aaataatcaaattatgtgcataattttttgagaattcaaaagaatccaat
caatatgagaaaatatgcaattaaaatacgataagaacaaagaaacgaca
ttatcattgcacacgtgcaattgaattcccattgcaactaagggacccct
tacagacacgcttcattttgagaaaaaaagcaTGAATTCATTCTATCTGA
TAATAGTTCTATGCTAGGTcatagaagaacaagagaaaggttattaaaac
gcaacaatttagtttttaacaaatgaaagaaaatctagaaatataacacc
aaaattgaaaatacaatttgttgaatgggtcaagggaaaactggaaattt
gtagaaataatttgaatgataagactaataagtgcttgaaataaaaatat
ctaaaaaaattttcttcgattttggacgtctgtgcccgtttgatattcaa
tatccgctaattggagagctgaAATAGGGGTTTTTACCATTTCGTGCGAA
AGAATTTGTCCgttaatcagagggtccgctaattgagtgtccgcctttta
gaaactattttatgaggatttgactaggaagcggccggggaaaatgaaat
tgtccgctaatcagaggtgtccgccgtttagagtgtccgttaattagagg
tttgaCTGTAtcagaaaatattttctaatgATTATTATCTCATGATTGGG
AAGCGtttttaacttgaaattttgatccTTGATAGTTTAGATTAAACTTT
TATCGTTTTGATTCAGTAACCTACTATATTGGATATCGCGAAAGTCAGTC
ACCTATCTTGAGCGACTTTTTCTTGATAAAAAAGTACACGCTTATTTACG
AGAATACAAATATTCATCATGGATTTAGCCGAAAAGTTATGAATATGCTA
AGACCCCAGCAATTCTCAAATCATTCACAAAAAATGCCTTTCTACATGTT
GAATTTAGGTCGAATTTGGACCGTAACCTAAAAATTCATTAACAATATTA
AgataaattttcgaaaaaagttaagaatatccccAGATTGTATGGAGAAA
AACGTGAAAATCGGCATGTGTATGCATTCTGGTATTTTATATGCTTATGT
TCTTATTCATCTCTTCTTTCACTCCTATCGAAGTTAATCAACCGTCATGG
TGAATTCTTAAAACTCTCTATCAATTACAGAAAaagaattttggattttc
taaaactttGGCCCAAATcttgatatatatttttttctcttattatTCTT
ACTACAAGGGTAGCTTGTATTTTCTTCAGTAGACTAATAAACTGTCCTAG
TTTTCATAATTTCGATTGAATTCAACTTcgtgtggatttaatttcgcgtg
gatttaatttcgcgagccAGCAAATTCACAGGATTTCGTGAGCTTTATTT
TCAAACgtaaaaaattaacgaaaacGTGAAATGGAATATCACAAAGATTA
ATCCGattaaaaatctgatttttttctctttcaagcTGAAAAAGGAATTG
GATTCGTTCGACCCAGCATTCTTCGACGAGCTAGAGGATCTCAAATACAA
TTATCAGAAATCTCTTACAAAGAACTCGCTCTTGGAAAAGCAATTGATTG
ATTTGTCAGAGCAACTTGGTATTGATGTCAACATTCCACCCTAATTATCA
ACATATGTATTAACCCTGATGGGAACGTCACCTTACCTGCGCACTGGATG
GAACTTTAGTAAGTGCACGAATATTATATTGTTGATTATAAACACCGATT
CTTTCACCCTCGAATACACTTACGGGAACAATATGGAAACATGCATCTCC
ACTGATACAAGCCTTTTTATAGGATTCGTCTCCTTTTCAGggcaagattt
tttgaaatttctcaaatattacctcggtattttctcaaattttacaccgt
tacagtgcactttttcccacttgctcacaaatcaacccttacagtgcact
ttccaaagtccaaaaaacctacccttaagggttGCCCCCCCCCCCCGGGC
CTTTATGTAAAGTTTAGAGGTCATAAAAATGCAAATTCTTTTCGATTTGG
GTATTTCCAAAACTGATATTGATAATGTTTTTTAAAAACTTGTAATATAG
ATGTATGAAAAAAGATTTTACTAAAAAATGTGATATATTTATGGAAAATT
TTGAAAGATTTTTAAAATTTAGAAGAAATATTGAAATTTGAAAAGCATAT
GGCGGCTGACAGCCCACAACATATTTTATCCTTTATTTTCTCGTACGAAA
TTATATCTTGTGTATTTAAAATTTGGTGTCTAATTAAATAAGGAGGAGAC
TGAAC

Coding sequence (CDS) from alignment at scaffold_243:652329..661983+

>TCONS_00054564 ID=TCONS_00054564|Name=TCONS_00054564|organism=Clytia hemisphaerica|type=CDS|length=5145bp|location=Sequence derived from alignment at scaffold_243:652329..661983+ (Clytia hemisphaerica)
ATGTACGTTCCACTGTTCATCAGTTGTTTCCTTTTTTACGTGCTCCAGAA
AGAAAGAGAATTAGAAGAACTCACAGAGCGTATCGGCCAACTAACAACGA
ATGATGGTCAAAATCGTTCAATAGTGGTTAATCGAATGtatcaagaaaaa
ataaaatgtctcGATCAAGAAATTGCTAAAAAGAATGAGATTTTGAAGGA
GATCAAATCACACATCAGAGGTTGTGCTGAACGAGAAGCTCAATTGTTGA
GAGATATTGATGAACTCAAAGAAAAGgttgaatttttgcaaaattttccg
AATGGGGTTGAGAATGAAAATGACGCTCTTGCAGCTTTACAACAAAGCAG
ACTTCGTGTGCGGACATTAGAATGTGAAAAAGAGGAACTGGTGAACGAGC
TGAAACGTCTTCGAGAGCTGACCAATGACGGTGAAGAAAAAATAGacgtg
ACTCAAGATGAAATCATCaagaagttgaaaaattatgataaaatgtTAGC
TTTGGAAGTTGACTTGAGGACTCGCATCAAGTCAATGGAAATTGAAAAGG
AGAGACTTTCTAAAGAGAATAACAAGcTGAAAAAGGAATTGGATTCGTTC
GACCCAGCATTCTTCGACGAGCTAGAGGATCTCAAATACAATTATCAGAA
ATCTCTTACAAAGAACTCGCTCTTGGAAAAGCAATTGATTGATTTGTCAG
AGCAACTTGGTATTGATGTCAACATTCCACCCTAAATGTACGTTCCACTG
TTCATCAGTTGTTTCCTTTTTTACGTGCTCCAGAAAGAAAGAGAATTAGA
AGAACTCACAGAGCGTATCGGCCAACTAACAACGAATGATGGTCAAAATC
GTTCAATAGTGGTTAATCGAATGtatcaagaaaaaataaaatgtctcGAT
CAAGAAATTGCTAAAAAGAATGAGATTTTGAAGGAGATCAAATCACACAT
CAGAGGTTGTGCTGAACGAGAAGCTCAATTGTTGAGAGATATTGATGAAC
TCAAAGAAAAGgttgaatttttgcaaaattttccgAATGGGGTTGAGAAT
GAAAATGACGCTCTTGCAGCTTTACAACAAAGCAGACTTCGTGTGCGGAC
ATTAGAATGTGAAAAAGAGGAACTGGTGAACGAGCTGAAACGTCTTCGAG
AGCTGACCAATGACGGTGAAGAAAAAATAGacgtgACTCAAGATGAAATC
ATCaagaagttgaaaaattatgataaaatgtTAGCTTTGGAAGTTGACTT
GAGGACTCGCATCAAGTCAATGGAAATTGAAAAGGAGAGACTTTCTAAAG
AGAATAACAAGcTGAAAAAGGAATTGGATTCGTTCGACCCAGCATTCTTC
GACGAGCTAGAGGATCTCAAATACAATTATCAGAAATCTCTTACAAAGAA
CTCGCTCTTGGAAAAGCAATTGATTGATTTGTCAGAGCAACTTGGTATTG
ATGTCAACATTCCACCCTAAATGTACGTTCCACTGTTCATCAGTTGTTTC
CTTTTTTACGTGCTCCAGAAAGAAAGAGAATTAGAAGAACTCACAGAGCG
TATCGGCCAACTAACAACGAATGATGGTCAAAATCGTTCAATAGTGGTTA
ATCGAATGtatcaagaaaaaataaaatgtctcGATCAAGAAATTGCTAAA
AAGAATGAGATTTTGAAGGAGATCAAATCACACATCAGAGGTTGTGCTGA
ACGAGAAGCTCAATTGTTGAGAGATATTGATGAACTCAAAGAAAAGgttg
aatttttgcaaaattttccgAATGGGGTTGAGAATGAAAATGACGCTCTT
GCAGCTTTACAACAAAGCAGACTTCGTGTGCGGACATTAGAATGTGAAAA
AGAGGAACTGGTGAACGAGCTGAAACGTCTTCGAGAGCTGACCAATGACG
GTGAAGAAAAAATAGacgtgACTCAAGATGAAATCATCaagaagttgaaa
aattatgataaaatgtTAGCTTTGGAAGTTGACTTGAGGACTCGCATCAA
GTCAATGGAAATTGAAAAGGAGAGACTTTCTAAAGAGAATAACAAGcTGA
AAAAGGAATTGGATTCGTTCGACCCAGCATTCTTCGACGAGCTAGAGGAT
CTCAAATACAATTATCAGAAATCTCTTACAAAGAACTCGCTCTTGGAAAA
GCAATTGATTGATTTGTCAGAGCAACTTGGTATTGATGTCAACATTCCAC
CCTAAATGTACGTTCCACTGTTCATCAGTTGTTTCCTTTTTTACGTGCTC
CAGAAAGAAAGAGAATTAGAAGAACTCACAGAGCGTATCGGCCAACTAAC
AACGAATGATGGTCAAAATCGTTCAATAGTGGTTAATCGAATGtatcaag
aaaaaataaaatgtctcGATCAAGAAATTGCTAAAAAGAATGAGATTTTG
AAGGAGATCAAATCACACATCAGAGGTTGTGCTGAACGAGAAGCTCAATT
GTTGAGAGATATTGATGAACTCAAAGAAAAGgttgaatttttgcaaaatt
ttccgAATGGGGTTGAGAATGAAAATGACGCTCTTGCAGCTTTACAACAA
AGCAGACTTCGTGTGCGGACATTAGAATGTGAAAAAGAGGAACTGGTGAA
CGAGCTGAAACGTCTTCGAGAGCTGACCAATGACGGTGAAGAAAAAATAG
acgtgACTCAAGATGAAATCATCaagaagttgaaaaattatgataaaatg
tTAGCTTTGGAAGTTGACTTGAGGACTCGCATCAAGTCAATGGAAATTGA
AAAGGAGAGACTTTCTAAAGAGAATAACAAGcTGAAAAAGGAATTGGATT
CGTTCGACCCAGCATTCTTCGACGAGCTAGAGGATCTCAAATACAATTAT
CAGAAATCTCTTACAAAGAACTCGCTCTTGGAAAAGCAATTGATTGATTT
GTCAGAGCAACTTGGTATTGATGTCAACATTCCACCCTAAATGTACGTTC
CACTGTTCATCAGTTGTTTCCTTTTTTACGTGCTCCAGAAAGAAAGAGAA
TTAGAAGAACTCACAGAGCGTATCGGCCAACTAACAACGAATGATGGTCA
AAATCGTTCAATAGTGGTTAATCGAATGtatcaagaaaaaataaaatgtc
tcGATCAAGAAATTGCTAAAAAGAATGAGATTTTGAAGGAGATCAAATCA
CACATCAGAGGTTGTGCTGAACGAGAAGCTCAATTGTTGAGAGATATTGA
TGAACTCAAAGAAAAGgttgaatttttgcaaaattttccgAATGGGGTTG
AGAATGAAAATGACGCTCTTGCAGCTTTACAACAAAGCAGACTTCGTGTG
CGGACATTAGAATGTGAAAAAGAGGAACTGGTGAACGAGCTGAAACGTCT
TCGAGAGCTGACCAATGACGGTGAAGAAAAAATAGacgtgACTCAAGATG
AAATCATCaagaagttgaaaaattatgataaaatgtTAGCTTTGGAAGTT
GACTTGAGGACTCGCATCAAGTCAATGGAAATTGAAAAGGAGAGACTTTC
TAAAGAGAATAACAAGcTGAAAAAGGAATTGGATTCGTTCGACCCAGCAT
TCTTCGACGAGCTAGAGGATCTCAAATACAATTATCAGAAATCTCTTACA
AAGAACTCGCTCTTGGAAAAGCAATTGATTGATTTGTCAGAGCAACTTGG
TATTGATGTCAACATTCCACCCTAAATGTACGTTCCACTGTTCATCAGTT
GTTTCCTTTTTTACGTGCTCCAGAAAGAAAGAGAATTAGAAGAACTCACA
GAGCGTATCGGCCAACTAACAACGAATGATGGTCAAAATCGTTCAATAGT
GGTTAATCGAATGtatcaagaaaaaataaaatgtctcGATCAAGAAATTG
CTAAAAAGAATGAGATTTTGAAGGAGATCAAATCACACATCAGAGGTTGT
GCTGAACGAGAAGCTCAATTGTTGAGAGATATTGATGAACTCAAAGAAAA
GgttgaatttttgcaaaattttccgAATGGGGTTGAGAATGAAAATGACG
CTCTTGCAGCTTTACAACAAAGCAGACTTCGTGTGCGGACATTAGAATGT
GAAAAAGAGGAACTGGTGAACGAGCTGAAACGTCTTCGAGAGCTGACCAA
TGACGGTGAAGAAAAAATAGacgtgACTCAAGATGAAATCATCaagaagt
tgaaaaattatgataaaatgtTAGCTTTGGAAGTTGACTTGAGGACTCGC
ATCAAGTCAATGGAAATTGAAAAGGAGAGACTTTCTAAAGAGAATAACAA
GcTGAAAAAGGAATTGGATTCGTTCGACCCAGCATTCTTCGACGAGCTAG
AGGATCTCAAATACAATTATCAGAAATCTCTTACAAAGAACTCGCTCTTG
GAAAAGCAATTGATTGATTTGTCAGAGCAACTTGGTATTGATGTCAACAT
TCCACCCTAAATGTACGTTCCACTGTTCATCAGTTGTTTCCTTTTTTACG
TGCTCCAGAAAGAAAGAGAATTAGAAGAACTCACAGAGCGTATCGGCCAA
CTAACAACGAATGATGGTCAAAATCGTTCAATAGTGGTTAATCGAATGta
tcaagaaaaaataaaatgtctcGATCAAGAAATTGCTAAAAAGAATGAGA
TTTTGAAGGAGATCAAATCACACATCAGAGGTTGTGCTGAACGAGAAGCT
CAATTGTTGAGAGATATTGATGAACTCAAAGAAAAGgttgaatttttgca
aaattttccgAATGGGGTTGAGAATGAAAATGACGCTCTTGCAGCTTTAC
AACAAAGCAGACTTCGTGTGCGGACATTAGAATGTGAAAAAGAGGAACTG
GTGAACGAGCTGAAACGTCTTCGAGAGCTGACCAATGACGGTGAAGAAAA
AATAGacgtgACTCAAGATGAAATCATCaagaagttgaaaaattatgata
aaatgtTAGCTTTGGAAGTTGACTTGAGGACTCGCATCAAGTCAATGGAA
ATTGAAAAGGAGAGACTTTCTAAAGAGAATAACAAGcTGAAAAAGGAATT
GGATTCGTTCGACCCAGCATTCTTCGACGAGCTAGAGGATCTCAAATACA
ATTATCAGAAATCTCTTACAAAGAACTCGCTCTTGGAAAAGCAATTGATT
GATTTGTCAGAGCAACTTGGTATTGATGTCAACATTCCACCCTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034390	XLOC_034390	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00054564-protein	TCONS_00054564-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_243	supercontig	scaffold_243:652329..661983 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.05718e-07	3.31015	4.98088e-06	0.0788054	0	7.11735e-07	5.16197	2.17352e-06	5.11006	2.01479	5.34142	1.54691	2.29737	1.45403e-07	0.00341763	0.00389681	0.16901	1.84004	4.18474	4.26722	2.15934	5.43739	0	3.40335	4.34406e-08	0.000232009	4.2393	6.99812	7.28224	6.7645

Blast

[Close]

BLAST of TCONS_00054564 vs. Swiss-Prot (Human)
Match: CE290 (Centrosomal protein of 290 kDa OS=Homo sapiens GN=CEP290 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.155e-24
Identity = 82/218 (37.61%), Postives = 139/218 (63.76%), Query Frame = 2

Query:  125 RIGQLTTNDGQN-RSIVVNRMYQEKIKCLDQEIAKKNEILKEIKSHIRGCAEREAQLLRDIDELKEKVEFLQNFPNGVENENDALAALQQSRLRVRTLECEKEELVNELKRLRELTNDGEEKIDVTQDEIIKKLKNYDKMLALEVDLRTRIKSMEIXXXXXXXXXXXXXXXXDSFDPAFFDELEDLKYNYQKSLTKNSLLEKQLIDLSEQLGIDVNIP 775
            R  QL   D ++ +SIVV RMY+ K+K L+ +IAKKN+ + ++K  ++   ERE ++ +  ++L+++++ L++ P G E E      LQ  RL    L+ EK EL+++++  ++    G E      D++ +K+K          DL T++K  ++EK+ L +E  KLKKEL++FDP+FF+E+EDLKYNY++ + KN LLE+++  LSEQLG+++  P
Sbjct: 2254 RGPQLEGADSKSWKSIVVTRMYETKLKELETDIAKKNQSITDLKQLVKEATEREQKVNKYNEDLEQQIKILKHVPEGAETEQGLKRELQVLRLANHQLDKEKAELIHQIEANKD--QSGAESTIPDADQLKEKIK----------DLETQLKMSDLEKQHLKEEIKKLKKELENFDPSFFEEIEDLKYNYKEEVKKNILLEEKVKKLSEQLGVELTSP 2459

The following BLAST results are available for this feature:

BLAST of TCONS_00054564 vs. Swiss-Prot (Human)

BLAST of TCONS_00054564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CE290	1.155e-24	37.61	Centrosomal protein of 290 kDa OS=Homo sapiens GN=...	[more]

You are here

TCONS_00054564 (transcript) - C. hemisphaerica