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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054570 ID=TCONS_00054570|Name=TCONS_00054570|organism=Clytia hemisphaerica|type=transcript|length=2441bp
ggaaaaagccgtggtcgtctggtacaggctacACCGATATATACAAACAG
TGTTTTTATATATCGGTGCGCCCCCCCCCATGCGGCCAGAGACTGGGTAG
GTAGTGTAGATAGGGATTAATAATTACGGCAATTTGAATTTTATAACCCT
ATCTACATGATCTGAGTTATCAACTCGTGTCGTtctttcaagatggcgga
tgaaaacaacaacaaaatttttctcTGTGAAAATGTTCAAGGAAAAATCG
AAGTTTCACGTCAAATCACTGAAAGATTTTGTTGTGGGTATTTGATCGGA
AGATATGGCGAATCgggaattcaaatttttgatctTATCGAGCTTGACTT
GACACTATTTGAGAATTTTGACGTTAACAATGGACCATCTGATGCGATTC
AAGCAGAGTTTGCTTGTATCAGAGCATCATTTCCTGTCGGGCTGAATATT
GTGGGAGTTTTCATCACACAGCCAGAAAATGGAAATATCGAGgtTGCTCA
GCATTTGATTCGATACTTGAAGCAGATAGAAGACATCGTTTCAAATCCCA
GTTTGAATTATATTGTTTGTTTGATCAAACCTTCACACTGTGATTGGCAT
ATAGCCGATTCCGATGGTAATTTGAATATCGCCAATGATGTCTCAACCAT
CGATATAGATCTATCAGGTGAAGTTCTTTTTCGTGTTCAAAAGGAGGTCA
CTGTTAGTTACCTCGCTAAGAATACAGGAAATTGTATGTTTGATGGATTG
GATTTAATGTCCTCAGTAAATAGCAGATCGGCATTTTTGATTGATGAAAT
ACGTGCTATTCTTTTTGATAATGATGAAGGGCAGGTCATCGGAAATATTT
CCTGCAATGATATCGTGAATGATGTTCGAAAAGCCCGTGACATCAAAACA
TGGCCTGAATCACACCCTTTAGGAAATGTCATCAATGTCACCAATCTTGT
ACGAATGAGTTTCGATGCTTCGAAAGGTGATCCCAACCTAAACTCAGATT
CAGTCGATGAGATGGATAAAGAAATAGGATGTAGTGTCCCAGTTTTATTA
TCTAAAAGAATCAGTGGTCAATGTATCACCGTTAAAGTTAATGTTGATGC
TTTAGTGATGGCTCCATTGAAAACACCAGCACCAAAGCTATTATTTTTGT
TTCGAGATGCTATGTACAAGCAATCCACTGCTCTTCATTTAAGCATGCGT
AATAACAATAAGGTGTACGAACCTTTTCATTTTCTAACTTCATCTCTATC
AGTTTTTCCTATCACCACTCTCATCCCCTGTAATGATAACAAAGGGCAGG
TTTTGGGAGAGGATTCGACCACTGAGTACCGCCGCTCGCTTCATAAGCGA
TTCTTTATCGTTGTTGATCGACCCATCTTCAAGAAGTCTCAATCAATGTT
CAGTGAGAGGAAATTGAGTAATTATCATCTCATCAATCCACACCAAGGCT
TGAACATCCCTGCTATTGAGGGTGGTAAGGTGGCATTGGTTGATGGGCGT
TATGCATATCATCATTATACTCAAGAGAATTTCGATGATGGTCATTGGGG
ATGCGCGTACCGTTCACTGCAGACACTAGCTTCTTGGTTTTGGTTGCAAG
GGTACACTGAGCGTCGATTCCCAACGCATGAAGAAATCCAAAAAGCGTTG
GTCAAGATAGGGGATAAAGAAGCTAATTTTGTTGGGTCTCGTGAGTGGAT
CGGCTCAATGGAAGTCAGTTATTGTTTAGATGAATTGTTTGGGATCACTT
CTAAAACATTGCATGTTTCTACCGGTGCTGATCTCTCATACAAAGGACGT
GATTTGTATCAACATTTTAAAACACAGGGAACACCTGTTATGATCGGTGG
AGGAGTGCTAGCCCACACCATTGTAGGTgttgttttcaatgaaaatacGG
GAGAGACTCGTTTCTTGATCGTTGACCCTCATTTTACCGGTAATGACAAT
TTGAAAACTGTCCAATCTAAAGGTTGGGTTGGGTGGAAAGGTCAAAACTT
TTGGAATCAAACGGCTCATTATAACATGTGTATGCCACAGCGCCCGAAAT
GTATCTAATCGATTCAATTGATaggattttttaaagattctatTCACTTT
TGACTGGGTATAATACACCAATGGTTACGGATTTTTTTCTAGGTTCCAAA
TTAACGAGGTAATTTCGTCCACTTCGAGCTTAGTGATGAAGAGTTATATT
CAATACACGggctgcaaaattatatcaatgcagtaaaaacatgtgattag
tactagtaatcgtatggtttggagtgcaaatAACGATTAataacgagtaa
caaaggagaaaatagtaatttgtacgagtccgaaggacgagtacaaatta
cggtattttctcctttgttacgagtgattaatcgttaattgcacgacaaa
acatacgattccgaggtaatcgtcagtaaacattcgaaaac Run BLAST on NCBI transcript from alignment at scaffold_243:720492..734018+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054570 ID=TCONS_00054570|Name=TCONS_00054570|organism=Clytia hemisphaerica|type=transcript|length=13527bp|location=Sequence derived from alignment at scaffold_243:720492..734018+ (Clytia hemisphaerica)
ggaaaaagccgtggtcgtctggtacaggctacACCGATATATACAAACAG
TGTTTTTATATATCGGTGCGCCCCCCCCCATGCGGCCAGAGACTGGGTAG
GTAGTGTAGATAGGGATTAATAATTACGGCAATTTGAATTTTATAACCCT
ATCTACATGATCTGAGTTATCAACTCGTGTCGTtctttcaagatggcgga
tgaaaacaacaacaaaatttttctcTGTGAAAATGTTCAAGGAAAAATCG
AAGTTTCACGTCAAATCACTGAAAGGTATACCAGTATTTTTTATCCTTCT
AAAACTATATGATAGGAAAAAACTGGAGCTAATGTGCAACGTCAacacat
accgtcaactgctctaacttgggatggACTAGAGAGTAGaggagtcccct
gcccagttgacGACCGGTCTAGTTGGGGACCAAACGtacgtctttgaacc
cagaaaagtcatacaaaaacaaagctctggagaatttcttttggtagtaa
tctgccttgacctatttcccgtactgtaaaaaaaattctagaaaaaaaca
agtagaatccgaaagatccaactttgcactCACTCGGAATCCACACAaaa
accagacgatctcaatcgaacggaatcgacgatcaaaccagtcgaaccaa
atcgaacgcaatacgcaatcgaatctcaatcgaacgtcaaaattctgggt
aatattcgattggttcgattgttgttcgacggtcgtggcttcttcatcAC
Aaacaaagacgaaagacagatctggacttattttgtactttccagtctct
tgttcgtacagttacatcaaaatgccttgaaaatgtcaatatgaaaattg
cgtaatcagagaacgtatgtctcgctcattataaaaaggcctagacaaac
tttcaataattggattgtaacatcgagtcaAGTCtctttgttaagtcacc
agggggtaaataaaacaaaccttgatacatttatcgatCGTTTCAACTCG
acaatttgtttaaaactcagcctcctaaatatttggggtaggtaaaatat
gtacaaagaaattcatacttttcgatttcgattgcatttattcaggttga
ttttttatgacttcttatggtactttttctaacgagtttgattactctgt
tctcacacttatgtctttttttttcgcgtccttttccgtgattactttta
tttatatttttaaagacaggttagaaggcatattgatgtaactgtcgtag
tttttctgactttctgtttctttgtgagttatttcctatgttttctaact
tactgaataaCTTACCgtcagatcgccaccggtgggattcgaaccctcta
aatgcaaagttccgatgttttgaaacccattgccttatccactgtgccac
ggattcatgccaggatagcgcttctgacggctatttatattgtccaaact
acagaccagactgtattaaaaaaaaaatcacaaaagagtgctcgtttcga
gctccaaccctaaccaaTCTGATatgtaaccacacccaaaccacacccat
acccaaccctaccaggtctcctgcaggtcctgacactattcccgcgtacc
ggatccgaaaaatagatacatgtctttcgtctttatgaagaagccttcac
cttgTTCGATCATCAATTCCGTTCgtttgagatcgtctggctttattctt
gcagcttcccatcatccaagctctcaaacatcacaagccgaatgaaatta
ctttagattttccgtagaaattatgcgatgaacaatccgggggtcaatga
gtcgacgatcgaacgcaatcaaacgcaatcaaacatcaatcgaacgcaat
cgaatatcaatcgaatctgaaaattgcagttatattcgattgagattcga
ttgcgtttgacaatcgaatttcaatcgatcgattgcgttcgattttgttc
gactggttcgtcGATCGTCGCTTCCGTTCGCTTGAGATCGAAAAAGccag
atttttcgaaaaaaatctaaaatagctacctgtggacaaaaaagttTCGT
AAGAAAAAGCACTTTATCTgccactccaaaaaatacttgtccaaaacgat
GAGTATGTAAGAAagcattcaacattccttcgtgtgaaatattgataaaa
aagttgatttaatcagcttcgaaatttgacgtccagcctgcgaccgacca
aactcaaaaaatgaaaaagaagactctacattgcgatcaaaacattccag
atgctgagaaaaaaaagaagaccttACATTGCGATCACAACATTCAAGGG
GCATGTCCGCGGTCTTTAACTTGACAACTCCAATGGGAAGTTTCTAGCTC
CGGAttgaaataacaaaggaaaCCGGTATATTGAATCTCCGGGTAGAtat
aaaaaattcccgcgtttttatCAAACAGTGTGGCTCAAATCCTTCAGATC
CttgattagaaaaagctatatcGTGAGGGGTCCTAAACCGAtcggtcttt
caaagatacaaactaaaataaaatcaaacctTTCACTGTGACGCAaggaa
gataccaaagtgtcaactaaactgagagatttgatacattgaaccaatta
aaccaaataacaataattgcttcttatacaaaacattgCAATATgtacaa
cgtcataaatgacaacaatagtaacagtatcataaaaagtaattattttt
acaattcacactttttaaaattacattaattgacatcttcaCATTACGGc
aatcttgttagatgttttgtttcgagagttcttgcaatagtttatcgttc
aacttggagagggaatgttttctcaacttcagttgagctacaatctgaca
atgtctgtctgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgt
ctgtctgtcacaaaaactttagggcagcctggagacttaaaaaatggtca
TATTTGGCtgaaatttggcacacttgttccttgggtgaatatctgggggt
gtttttttcatttttcaaaaattttgatttttggggcctggggacgagtt
tttcaccaaaatgaggctaaaactttggggcaacctggaaactttaaaaa
ttgtcgtatttagctgaaatttggcacacttgttccttgggtgaatatct
gggggtctacaatcgggcctatgaataatttgaagccactgaagttgagc
ccagtgcgttgcgcacgttcgactatgtaaacatagaatttttttcataa
cagtcaTCTGGGGgatcggaattaggcagggctgttttttcttgccagat
tcaacaagccatcaaccaacaaaattaataccgacatcaaaaaattcaaa
cgacctttccactagacacttctaaattatctgctattatgaagatgttc
cgaaattaaccaattgggtttacaatcggaattCCTCTGGGAGTTAGCGT
AAAGTTACGTAATAGCTAATACATAATTTTTCTGGGGTTGAAACCTGttg
aaaagtataaaaaaattgaaatggtttgtttttttcttcattatatattt
aagttttcattatcaaaattttcaaaatgctaatttgtagaccatattag
aaaatggttatatatttagcaaaataaacacttacaaaagctattactta
ctatttttacccccacctTTTAAACAGCGTCTTCTGTGGGCGTGATATCA
GGTGGAGACAAAATGCCCTCATAGTAAGATCCTCGGGTTgtcttattgtt
tgttccttttgtcgAGTCTGTCAGTCCTATTGTTCATGCCAAATCCATAC
ACGATGACGTCAATGTCTGGcggcatacctgaaaataaaaacaaaatgat
tattattatttttgcatgaattacgctaccttatatgtcattataaaatt
atacaaaacgaaaGGGAGTCTAGGCCGCTCGCCTTGAGAGCGCGggccct
aatattttttctctcgcggtctttaggggaaaacgaaagtgatcgatatt
gtTCGAAGGAAGTACTTGCCAAAAAAAAccctagacaaaaagatgtattt
tgaggttgggaatggatcctgcgaagatgaaacaattttgactagagatt
tttttggcaaacccaaaaactctaatttttttccttccctcaagctaaaa
aggttacgggttttgggcaatcgaggcaaaaaccagcaaaaagctggtgt
ttccGTAAATCTGAGAATCGCAATAATATCCTCACTGTCAAATGAAGACT
Ttccatagaccgccactttcaaaacaaaacaaaaacaaactttagaaaaa
aatggcgacttgaagaaaaattctaaaaaaacatgccgaagggaaatgta
tatgagctattttaaaacaaaagaacaagtGCAAAGAAATtaatacggga
aagcttatgagtttttttatcatcctgatcaattcATATGACCTAacctg
caagtagagcactgattttctctttttagcaATCGGTCACAGACTGGTAC
CGCtcgcttcaaaagttttttattctaacaAGAttgcctcaaataaaaaa
tcaaaacaaacacgaagagcatgttaaaagtCGTCTAAccgttggttccc
aatggtcctaaacctcgtgggacactccctctcaatggattagacccatt
gaagtctagcaaAATGGGCAGAAAGGagtttcaaaaaagtaaaaagtaag
tgagaaatttgaataaaagaatTTCCGTCGCCAACTGGGTAGGGTActct
atctgacaaaacatgggacggcaatttggccaccatttcaccaccgctaa
cctccaaagtcatttgatttgacttaatgaacggtgtattaaaaaataca
cgaaaacaaatttgttgtcaaggagatttaacagtaagtgaaaatacaga
ccagatatcaaccagtcccatgttttgaccaatcatcccaagttagagca
gttgacggtagttcGGATAGATTGGTTCGTTTGataccgtgaagtcaggt
aacttgcatcagtcgaggctaacatgcacagccctcaaatgactgactaa
tcaaagcagcaaaatttcaaaacaaatgaattaCGCAGCTttgctcacag
ctctactctaccatttttgctttgattaaactttgtatttcaaggaccag
acaggtcattcatttgagggctatgcatgttagcctccacctgcctccac
tgatgcaagttacccgacttcacggtacctCTTgagggggatgacacctt
ctgaaaaaatgaaaaagtgggggatcgatcagaaattttcatgaagaaGG
GGCCGGGGATAGTAAGAAAGCGGGGGATGGTCTAAGAAGGGGGGTAGCTT
ACATGTATattgtaccgtgagattgggtaacttgcttcagtggaggctaa
catgcatagccctcaaattacTGACCAATCTAAGCAGCAaagtttcaaaa
caaatgaactacacagctccgcttgcagctctactagggctatgcatgtt
agcctccactgattcaagttacccaatctcacggtattatTTTCAAGcgc
tgttatgaaatttggtcttaaTGAAAGGAAGTCTTttgttagagtagtct
gaacTGAGTCAATAaggccagacggtgtcaatcgaacaactacgaacaaa
aattgcaatcgaaccaatcgaatgtaATCAAACACAATATGGAACGCGAT
cgaataccgtcaactgctctaacttggaacgaatggtcgaaacatgggac
tgttgatatctggcctgtattttcacttactgttcaatctctctttgaca
acaaatttgttttgataactccaccaagtttatcaatcatactttctgtc
ataacatatCGCAATAACTGTCACTGGTagtgcgccctttttaacttttt
tgttttcattcaaaataaccagacaccgattggagaattagagaacgccc
gccacCTAACTACCTGAAGTTTTTAAATCCACCATAGAACCTATCCTTCT
TTATGGTTCGGAAACGTGGTCCTTCACACGTAAATTAGAAAAACAACTCG
ATGGAACATACACACACCTTCTANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTTTTAG
TGACCTGGAGACTGCCATGCGCGACCGCGATTCTTGGCGCCAGAGGGTGG
AATCCATCATCTCGACCGCGgtcgaaagatgatgatgaaCTGCCTGATTT
TTCAAGTGAactttaagggaacttattttgacgGGAACTagttttggtga
aaattcgccaaaataagttcccgtcaaaattaaatattttgctcactcgc
caaaataagttatcgccaaaattaaatCTTTAGGTATTTtaaataacttc
ttgagttaaaaaaaaagcttcaaataaggtaaaatGCCCTAGAACAGATT
AGTTCCAGCGGCCAAAATTAAGGACGCTTgtcaaaattagtttccttaaG
GTAATCTAAAAACATTAAAGAGTTTAAAAGCAGCACATGATCTAACAACA
TTGAAATTTCCAGGATGATCCAGGAAAGCGAATCGGCCAGTTAGTGGAAG
TAGTTGAATTTTTCATCTGATCAAAATCAGGTTTTATCAGACACAAACTA
aagaaatctataaaaaaaacaaaagaaaatgtttctCATACAAAAATCTC
AAGACTGCAACCATGGGTTGCCATGAAGACAGACTGTATATCGGCTAAAT
TAAATCATTTTTACTACCTTCATTCCATGTTCATccttttttattatatt
attctCAGTCTGTCAGGAGTTTGATAAACTTGCTGCAAAatctttcaata
aaatttaatttaattttttttatagcaatatatttcgcaggtctatgtAT
TGACCTCTTttaaacagaacttttgattttacattttacaaagtttttcc
taccattcttttatcaaacgctctttgaagacttttAAGGATTGTTGTTC
AAtaatatcttcttctagatcattccaaggttttacacttctgtaaaaaa
gagagttagtttggtagcctctcataccgtcattagcaaagttcctttgg
TCGTGTCCGAGGagaaaatttctctgatcttatgAACTCGTCATAAATGT
GAAGGTTCTCGAAAACTTCTACCATATCAGGAACTTGccgcctggtcttt
aggctTGGTAGTTTGATGAGTCGTAACCGATCTTCGTATGCGTAGTAAAT
TTACTAATTAAAAAACAACTGAGTGATCAGATATATTTGAAATGTACCAG
TTCTGATTTTTGGGTCGTGTCACTCAAAGTGAAGTTGTTATATCCACTAA
TTCACTTTAGCTACACGGATGGTGTCAgccccccccagaaatctgaaggg
cacctaggccaggttagtagaggggggctaatgccttgcaattctttggg
gttacctattcattaagggtacctagctgtcttgatggaggctctgatgg
ctggttatattttccaaatcgaatttttcaaaatatttcaaattattgaa
ttttttttaccccagcacctagtttcccatccaatttctttttcttttcc
catcacgccatctttgctatatttttctaatgtggttgttttgatttaca
gccgccatctttatagcataacaacaaaTTATTTTGGCTGaatgggggta
cctaactcaaagcaatttctcaaggggacctaaattgctgggggcaccat
gctcaagaggcccggaattcccgagttattttttccgagttaaaaaaacc
gagttaagaaaaaaccgagttatcccgagttatgacgtcatttttgtaat
ttagtgacgtcatttttcattttttaactcgggaatttttgcttccttta
actttccgagttattttccattttttaactcgggaatttttgatttcttt
aactttccgagttatttttcattttttaactcgggaatttttgcttcctt
taactttccgagttattttccattttttaactcgggaatttttgctttct
ttaactttccgagttatttttcattttttaactcgggaatttattcttcc
tttagctttccgagttatttttgaatttttaacttgggaatttttgcttc
ctttagctttccgagttttttttcttcttaaaaaaaacaccagctttaGT
CTATTGATCCCATACCAACCAAAATCAAAGACACTTAACCTgctttgaat
aaaatgaataatcaaCAAACAAGTGAATAATTGAAAAACAAGAATTAAAG
TTAAAACCTGCTAGATAAACAAAGTGTAAGCCCTTCAAAAATCTTACAGC
ATAAATGTTGtgtaaatctcaaaaaatacagCAGGTAAGTGATGTgataa
agctatttcaaaattaatatttCCTCGCCCTATTTCattaaagaatactg
taagtgacatgacaagattttcagaaaaagtccttcccccttcgctgtaa
aaattttgaatgaatcatCAACGATTCTTGAATCGATCATAAAGACTGGC
AGTCTTTAAAGCTAAAAGGCGCTTCAATGAATGAACATCAAATTTTCgta
aggtcttaagtaaaattttacgtgcatgtgaaaaaagctttagtAGAAGC
AAAAAACAATGGAGTGATCGTGTAAGACCCGTTCGGCTCCATAGAAGCCC
GGGGGTACTAGAATTGCAAGCTaacgggtatgtgccgcaaaaatcgagga
aaaaactgatttttcgggattttgtgacccttattggaatttttggctgt
ttttacaAGCCTTAGGGGGACTGAACttagattttgtgatttttacgacc
cttcgaAGGTCCAAAAAATACCCGTACTTGCCTTAGTACCCCCCCCATAG
AACTCATTCACAAAATTCTTCTTCTAATCTATTGCTTGTGGTTTCGATCA
ATAGATTATagctggtgtttttttatgaagaaaaataactcggaaagcta
aaggaaccaaaaattcccgaggtaaaaaaatggaaaataactcggaaagc
taaaggaagcaaaaattcccgagttaaaaattcaaaaataactcggaaag
ttaaaggaagcaaaaattcccgagtNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggaaagttaaaggaagaa
aaaattcccgagttaaaaaatggaaaataactcggaaagttaaaggaagc
aaaaattcccgagttaaaaaatgaaaaatgacgtcactagattccaaaaa
tgacgtcataactcgggataactcggttttttcttaactcggttttttta
actcggagcacctgaaaagtgggctgaaacaaTGTAACGCTAACATTCCC
TGATTCGATTCCCTTCCTGAGACGGGGTCAAACTTAAAACTCTTAATatg
tccataaaagtatcactgtCTTGTTTATTCTATTTTACAGATTTTGTTGT
GGGTATTTGATCGGAAGATATGGCGAATCgggaattcaaatttttgatct
TATCGAGCTTGACTTGACACTATTTGAGAATTTTGACGTTAACAATGGAC
CATCTGATGCGATTCAAGCAGAGTTTGCTTGTATCAGAGCATCATTTCCT
GTCGGGCTGAATATTGTGGGAGTTTTCATCACACAGCCAGAAAATGGAAA
TATCGAGGTATAACGTTTTGACTGATTTGAATactttattttgaatattt
tttatactTATTAAAAGAGCATACTTTCTTGAAGGAAGTTTTCAAGATAG
TTCGTcgtactttaatcgtagaattttagcgttttagcgagttttcccta
ttttcgctaaaagaaaaatttaaatgaaaaatttctgtaacgctagccca
gtgacatattaaggtttctaaaatttgaacgccgcggctggaaaacctat
cctccttcgatacaaaaagtcttgcgctaagtttgacaagcgtagaaaac
tcggattagaAAAGACTCTACACTactatttgtaaacgaaaaaagttctg
acgtcaatttcatgaaaaagtactgcgacgtcacagagtttcaaataaaa
aggtgtggcatttttgttgcacgatttcgaattattttatatcaacacac
gcaacaaaatccaacattgttgtttgatcAGGTTTGATGATTAAACttcg
tctaacattatttaaaaaaggtttcaatgttggttgcattgcatatgcgc
cggtcttaagctgtccgcatgtgaagccaacaaacgggaaaaccttcagt
gctcaatcgcaaagcgcgagcctctccttcacaactaaggctttttcttt
cctagaagcaaccctctcaccacctcagacacctttgggtGTCTGCAACT
ACGGGcaccctcgataattttgacagggtcactatggcatttcattgaaa
acaaacttccgttatcttaaaaagacatatcatcgaggcttacagacaca
aaattttaACTAATGTAGAAAGTTTAGaagtataatttttattattgtat
tcggcattttaagccaaaacgatgtcaggaattaacccacattatagtat
tttaaaggcttttgatgtgcaagcaaaaccgtaaaccggcgtttgcgacg
acgggaaccgtctagtagtTTCTAAACCATTTCTGAAAACAAGCCGTGGC
TCTTGTAAAAAACCAGCGCAATGAGTTTTCTTCAAGCACTAATTCTTTCA
AGCTCATAAGATTTATGTGTTTCAGTCCCCTAAAACTTTAGAAAACtaat
taaagaaatttattttatcattttttaggtTGCTCAGCATTTGATTCGAT
ACTTGAAGCAGATAGAAGACATCGTTTCAAATCCCAGTTTGAATTATATT
GTTTGTTTGATCAAACCTTCACACTGTGATTGGCATATAGCCGATTCCGA
TGGTAATTTGAATATCGCCAATGATGTCTCAACCATCGATATAGATCTAT
CAGGTGAAGTTCTTTTTCGTGTTCAAAAGGAGGTCACTGTTAGTTACCTC
GCTAAGAATACAGGAAATTGTATGTTTGATGGATTGGATTTAATGTCCTC
AGTAAATAGCAGATCGGCATTTTTGATTGATGAAATACGTGCTATTCTTT
TTGATAATGATGAAGGGCAGGTCATCGGAAATATTTCCTGCAATGATATC
GTGAATGATGTTCGAAAAGCCCGTGACATCAAAACATGGCCTGAATCACA
CCCTTTAGGAAATGTCATCAATGTCACCAATCTTGTACGAATGAGTTTCG
ATGCTTCGAAAGGTGATCCCAACCTAAACTCAGATTCAGTCGATGAGATG
GATAAAGAAATAGGATGTAGTGTCCCAGTTTTATTATCTAAAAGAATCAG
TGGTCAATGTATCACCGTTAAAGTTAATGTTGATGCTTTAGTGATGGCTC
CATTGAAAACACCAGCACCAAAGCTATTATTTTTGTTTCGAGATGCTATG
TACAAGCAATCCACTGCTCTTCATTTAAGCATGCGTAATAACAATAAGGT
GTACGAACCTTTTCATTTTCTAACTTCATCTCTATCAGTTTTTCCTATCA
CCACTCTCATCCCCTGTAATGATAACAAAGGGCAGGTTTTGGGAGAGGAT
TCGACCACTGAGTACCGCCGCTCGCTTCATAAGCGATTCTTTATCGTTGT
TGATCGACCCATCTTCAAGAAGTCTCAATCAATGTTCAGTGAGAGGAAAT
TGAGTAATTATCATCTCATCAATCCACACCAAGGCTTGAACATCCCTGCT
ATTGAGGGTGGTAAGGTGGCATTGGTTGATGGGCGTTATGCATATCATCA
TTATACTCAAGAGAATTTCGATGATGGTCATTGGGGATGCGCGTACCGTT
CACTGCAGACACTAGCTTCTTGGTTTTGGTTGCAAGGGTACACTGAGCGT
CGATTCCCAACGCATGAAGAAATCCAAAAAGCGTTGGTCAAGATAGGGGA
TAAAGAAGCTAATTTTGTTGGGTCTCGTGAGTGGATCGGCTCAATGGAAG
TCAGTTATTGTTTAGATGAATTGTTTGGGATCACTTCTAAAACATTGCAT
GTTTCTACCGGTGCTGATCTCTCATACAAAGGACGTGATTTGTATCAACA
TTTTAAAACACAGGGAACACCTGTTATGATCGGTGGAGGAGTGCTAGCCC
ACACCATTGTAGGTgttgttttcaatgaaaatacGGGAGAGACTCGTTTC
TTGATCGTTGACCCTCATTTTACCGGTAATGACAATTTGAAAACTGTCCA
ATCTAAAGGTTGGGTTGGGTGGAAAGGTCAAAACTTTTGGAATCAAACGG
CTCATTATAACATGTGTATGCCACAGCGCCCGAAATGTATCTAATCGATT
CAATTGATaggattttttaaagattctatTCACTTTTGACTGGGTATAAT
ACACCAATGGTTACGGATTTTTTTCTAGGTTCCAAATTAACGAGGTAATT
TCGTCCACTTCGAGCTTAGTGATGAAGAGTTATATTCAATACACGggctg
caaaattatatcaatgcagtaaaaacatgtgattagtactagtaatcgta
tggtttggagtgcaaatAACGATTAataacgagtaacaaaggagaaaata
gtaatttgtacgagtccgaaggacgagtacaaattacggtattttctcct
ttgttacgagtgattaatcgttaattgcacgacaaaacatacgattccga
ggtaatcgtcagtaaacattcgaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054570-exon-scaffold_243-1491911889:720492..720766 | TCONS_00054570-exon-scaffold_243-1491911889:720492..720766 | Clytia hemisphaerica | exon |
| TCONS_00054570-exon-scaffold_243-1510915933:720492..720766 | TCONS_00054570-exon-scaffold_243-1510915933:720492..720766 | Clytia hemisphaerica | exon |
| TCONS_00054570-exon-scaffold_243-1575043694:720492..720766 | TCONS_00054570-exon-scaffold_243-1575043694:720492..720766 | Clytia hemisphaerica | exon |
| TCONS_00054570-exon-scaffold_243-1491911889:730732..730948 | TCONS_00054570-exon-scaffold_243-1491911889:730732..730948 | Clytia hemisphaerica | exon |
| TCONS_00054570-exon-scaffold_243-1510915933:730732..730948 | TCONS_00054570-exon-scaffold_243-1510915933:730732..730948 | Clytia hemisphaerica | exon |
| TCONS_00054570-exon-scaffold_243-1575043694:730732..730948 | TCONS_00054570-exon-scaffold_243-1575043694:730732..730948 | Clytia hemisphaerica | exon |
| TCONS_00054570-exon-scaffold_243-1491911889:732070..734018 | TCONS_00054570-exon-scaffold_243-1491911889:732070..734018 | Clytia hemisphaerica | exon |
| TCONS_00054570-exon-scaffold_243-1510915933:732070..734018 | TCONS_00054570-exon-scaffold_243-1510915933:732070..734018 | Clytia hemisphaerica | exon |
| TCONS_00054570-exon-scaffold_243-1575043694:732070..734018 | TCONS_00054570-exon-scaffold_243-1575043694:732070..734018 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:720492..734018 + |
Blast
BLAST of TCONS_00054570 vs. Swiss-Prot (Human)
Match: UFSP2 (Ufm1-specific protease 2 OS=Homo sapiens GN=UFSP2 PE=1 SV=3) HSP 1 Score: 322.398 bits (825), Expect = 2.732e-100 Identity = 163/362 (45.03%), Postives = 224/362 (61.88%), Query Frame = 1
Query: 988 LNSDSVDEMDKEIGCSVPVLLSKRISGQCITVKVNVDALVMAPLKTPAPKLLFLFRDAMYKQSTALHLSMRNNNK-----VYEPFHFLTSSLSVFPITTLIPCNDNKGQVLGEDSTTEYRRSLHKRFFIVVDRPIFKKSQSM-FSERKLSNYHLINPHQGLNIPAIEGGKVALVDGRYAYHHYTQENFDDGHWGCAYRSLQTLASWFWLQGYTERRFPTHEEIQKALVKIGDKEANFVGSREWIGSMEVSYCLDELFGITSKTLHVSTGADLSYKGRDLYQHFKTQGTPVMIGGGVLAHTIVGVVFNENTGETRFLIVDPHFTGNDNLKTVQSKGWVGWKGQNFWNQTAHYNMCMPQRPKCI 2055
+N D + EM + P++ + + + + VDA++ + K+ L DA++ Q T + + K V EP HFL +T P GQ+ YR+ LH F + DRP FK+S + F + + ++ NPH LN P +E G + +V G Y YHHY Q+ DD WGCAYRSLQT+ SWF QGYTER PTH EIQ+ALV GDK A FVGSR+WIGS+EV L++L GITSK L VS G++++ +GR+L HF+++GTPVMIGGGVLAHTI+GV +NE TG+ +FLI+DPH+TG ++L+ + KGW GWKG +FWN+ A+YN+C+PQRP I
Sbjct: 115 VNIDLMLEMSTSLAAVTPIIERESGGHHYVNMTLPVDAVISVAPEETWGKVRKLLVDAIHNQLTDMEKCILKYMKGTSIVVPEPLHFLLPGKKNL-VTISYPSGIPDGQL------QAYRKELHDLFNLPHDRPYFKRSNAYHFPDEPYKDGYIRNPHTYLNPPNMETGMIYVVQGIYGYHHYMQDRIDDNGWGCAYRSLQTICSWFKHQGYTERSIPTHREIQQALVDAGDKPATFVGSRQWIGSIEVQLVLNQLIGITSKILFVSQGSEIASQGRELANHFQSEGTPVMIGGGVLAHTILGVAWNEITGQIKFLILDPHYTGAEDLQVILEKGWCGWKGPDFWNKDAYYNLCLPQRPNMI 469
The following BLAST results are available for this feature:
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