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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054572 ID=TCONS_00054572|Name=TCONS_00054572|organism=Clytia hemisphaerica|type=transcript|length=746bp
GTCAGCACACGTGACTCTTTTTCGCCCCGCCCATCCATTTTCTCAAACTT
CTAGATGTGCGCAAGGCCTTAACTCATTCGAAAattcaaacgttcgaatt
ctTTGAAACGTTCGAATACtcgaatcaaaacattcgatttattGTTGTGA
CATGACAACAAGctcaacaaaaaatcaaaacaagtcgTCTGTTCTGGAAC
TTTTCGCCAGTCTACTGCTGACTGCCACTGCAAACCCAACGAACTGATCA
TTTCACAAGAAAACCTGGTAAACTATCTTCGATACTACATCTCAAGATGA
GgTCCATATCGATTACTTTGTTGCTTTTGGCAAGTTTTGTTTGTATGCAT
TCAGCAAATCCTGTTCTTTCAAcCAAAGACTATTCGGGAAAAGATGCAAG
AATAATCACAGGAGATATCATGACTACAGcaaactttttgtttaaaagac
ACATTCATGAAATAGCAGAATTGAATGCTGCAGAAGCTGCCAAATTGAAA
TCAGATACTATTCAACAAGCTATCGACCGTTATCTCAAATTCGAAGAGGA
AATGGGCCAGAAGAACCATTTCAATGCTATTCCACCTAAAGGTTCACAAC
CCTGAAgctaagtttttattttttattaattgcATTGTTGATGTAGGAAA
AAGTTTAAATCAtgaattaaaaagattttttgaatgtACCAAATATTAAA
TTCTGTGTCATTCGAATATCACAAGATTTGGTCatttagaaattaa Run BLAST on NCBI protein sequence of TCONS_00054572-protein >TCONS_00054572-protein ID=TCONS_00054572-protein|Name=TCONS_00054572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MRSISITLLLLASFVCMHSANPVLSTKDYSGKDARIITGDIMTTANFLFK
RHIHEIAELNAAEAAKLKSDTIQQAIDRYLKFEEEMGQKNHFNAIPPKGS
QP Run BLAST on NCBI transcript from alignment at scaffold_243:735556..741948+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054572 ID=TCONS_00054572|Name=TCONS_00054572|organism=Clytia hemisphaerica|type=transcript|length=6393bp|location=Sequence derived from alignment at scaffold_243:735556..741948+ (Clytia hemisphaerica)
GTCAGCACACGTGACTCTTTTTCGCCCCGCCCATCCATTTTCTCAAACTT
CTAGATGTGCGCAAGGCCTTAACTCATTCGAAAattcaaacgttcgaatt
ctTTGAAACGTTCGAATACtcgaatcaaaacattcgatttattGTTGTGA
CATGACAACAAGctcaacaaaaaatcaaaacaagtcgTCTGTTCTGGAAC
TTTTCGCCAGTCTACTGCTGACTGCCACTGCAAACCCAACGAACTGATCA
TTTCACAAGAAAACCTGGTAAACTATCTTCGATACTACATCTCAAGATGA
GGTAAGAATGTTTCTGTTATACGATTATACTTTTATGTGAATATTCTAAT
TATTCTATGTCTATGTTATGTTTCACCGAAATAAATAGATNATACTTTTA
TGTGAATATTCTAATTATTCTATGTCTATGTTAATGTTTCACCGAAATAA
ATagatattcttttgttttattttctcgCGCTGGCttctttcgaaataaa
tcatAGTAGATCGGTTCTTATTGCCTAAAAAGTTTTGGTCGCTACAGTGC
TTTACTTACTTAGATCTATTAGACTTTTATGACTGCATAATTCACATTTC
AAATCCATAAAGCCAAACGGATTAATACTTAGTTTTACCAAGAActgatt
tttccttttttagacATAAAATCTGGTGATAGTCATCtcttgatttcatt
tttatttattttcttcaggTCCATATCGATTACTTTGTTGCTTTTGGCAA
GTTTTGTTTGTATGCATTCAGCAAATCCTGTTCTTTCAAGTAAGTCTTTT
CTGTTTTTCAAATTCCTTATTGATAATTTATGTATCTTATTGTCCCTTTT
AATACAGACCCATAGTAAACACCAACCCTATTGCTGGTAAAGTTTGCCCA
TTTTAAAATAGAGTGTTAAATGGTCATTGAGACGGGCttagaaaaaaagg
tttaaatTGGAGCGTTTGCTTAAAACCGAGAACAATCTTGTATTCCCGAA
ACCCAAAAATCtatatactagcaagtagctgtcgctatgaatgccccgcc
gatagcagacattagcccagaggaacttagccatgaagagagcaagggaa
tcataatcagactgtaaattggtgaaatgagtcttcataaaaagtgctca
atgttactagtagagctgtttaaagttaagaaacacgagccgatgcggtt
aaaattttctcagtaagatccatacataacgaaagtgtcaatccaaaaaa
acctgttaaatctacactttctgatgcaaatgacctaaattaaaaccatt
acaggtttcgcaacatgttaagggctagaatgatatcaaagttgattttc
ttcaatcaccagataaaaatcacttttgaaaacccaaacataACAATGTG
CACtgtactgtgaaactgaaagtgcttccctcccataaagaatacataat
gcagattaaaggtgaattccaaaatgaaattgaatacaatttcagtcATT
TGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNattcacaaaatagcatcaaatactccataatccatcgttttt
cggcttttgttccgcttctgtttacatttttctgctcgctgctCCCCATG
CTCAACCATTTGTTTGCTGTAACAGctgtgcttcaaatgtccacgagaat
gaaTCAGTTCATGTTAGTCATAGTATATTCTCATTGGCATGTCTCACTTA
TAACCTTCTGtaagaaactcaatgttggtatataccagtttttggcacgt
tttggcgcaaggctttactctttgaaaaattactttcgggGCACATGCAA
TATCGCCCGCCAtaacgacccacggcatggcccgaacattttcaatttaa
tttccttcaatatgaagtcactatataggtaaacaatatgaattaacggt
caatttcccttttgtctatgcctttataatatcagTAGGGTTTCGGTAGA
GCAGCGCATAGGCATAAAACACTTGCTGTCATTGAAGATGTCGTCTATCA
TTCTGAAAatcgtataaggtttgatccaatatcagtagtttgatagttat
tcattcagtagcaaacaatgtcctcagtaaatccagttgagcaactacgt
taaaaagatattaaccaagtgccaagcaaaaatcttgtgtgctgtttgtt
gtttgtgaaagcttTAGCTGGTGTGGACTTGGACTGGCAGTTCAGCCcgg
gactttcgatttctcgctttctcaaatgctctgtgtaaaatgcacgaaag
ttaaaaaaattatcacgaAAAAAATCGGAAGAAACATGAAtctgaacatg
aatatttttctggcgagcaagtccgctacgtgaagcaacaaaagcccctg
cggggcaataatcagatggtttgagatttttgcctgaagaaaccCTCTGT
GGTTTCGAGTAAAATCAAGGGTGTCaaggtcagaatcacaaaattttcaa
tgttatttttttctccTATTTCAAAATAAAACCACAATAGGTTGGTTGTC
CCTTTGCCTCTTAAATTgccacaaattcatctcctgtcgtcAACCTTTTC
TTAGCCAGAGTGATTGGCCAAACAAACAGTAAGTACGTACCCCGATTGAT
CAAATATCTTATAAGTATTTCATGATTGGCCACTCACTCACCACTCACTC
ACCACACACAACATGTGGTtttgttgattaccaaaaattatgaCAAGTCA
TAGGCCATAGGCAGATAAGTAGAGAAAGAGGGGGAAGGGAAGCAGTTTTT
CCTGCACTTATCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGATGACGAATTTGGAGAAGATCG
AAAATGTGCAGGcttcaaattcttcagaatttgcgacaaaatagataaaa
tcaggactgtctattctgttttttcttctaCAACCATCTAAAGCCATTTG
ACGAGTCTtgacttttaacgttttgacACTAACAGCCATCAAATCCCGGG
CAAACCCTGCATTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA
CGCGACTTGATAaacagttttcttatatttaccgcggactttaagtcagt
aaaataaatctaatgacaCTAACGAATGATCCGGAAAAACAACTCCAGGT
Tggctaaaaacaagctgcgacaaaaaagactccggagcatacgctgcgag
tgcatgttttgcaggggtgtcgcaccgccccTGCAATTGGCTTGATTATT
TCTTTACAGGAAAAGGTATTTCATGGTGATGCCCAAAACTTTGCATTGAT
TGATTACCAATCCGGAACACCTTAAAAATaaccggaacagccgaaaaccg
atGGAAAACggatttcattgatttttttgattacaCTCGAtagattttca
ttatttttttgatttaagGAAAATAGTTATTTCCAAAATGTAATGGTGCC
CAATTtcgaagaaaaattatttctggcCGCCAAATCcagaaatgtcccga
aaaaaattccTCGAGATTTTTTCAtcacagtggagtctccataactcaaa
cacgcACAGGGAAcacgaatttgttcgagttgGAGAAAGGCAACcgggca
ttgttaactgaagggactacaaaagttgttcgagttaaggagacattcga
gttaaagagactccagtgtagttttttctgacgttttgtttattttgaat
ttaatgtttgCTGTTGATCAGCCAAGTActgtaggtccataaaagtatca
cttgtctcTATGATGTGAAATCGATTTCACGCCCTAAAGTATTTGACCAT
AACTATGCAAAATACGGTTCTAAATTCTTGATAGGTTTTATTATGGTTTT
TTGATGTTTAAAAACATATTCTTGTTGTTAGGGGTTTACTTACCTTGTCG
ATATTTGAAATTTGCATTTACTTGCTACATTCCATATGCTACTctacttt
gtattttaaggctCGGTGTACACCTAAAGCTTGTTATTGTAAAATCGACA
TTTCTAATATTTCGAACGTTTTAATCAAAGGCGGGAATTATCGACCAATC
AGAGAAAAGAATttgctttgtttgtgtttttagACAAAAGCAAGAGATTT
TTTGTTCTTATGCTCACATTTTGGAGATTTTGAGAGAAAGGCTTGCGGAC
AcgttttctttcatttcagcCAAAGACTATTCGGGAAAAGATGCAAGAAT
AATCACAGGAGATATCATGACTACAGcaaactttttgtttaaaagacACA
TTCATGAAATAGCAGAATTGAATGCTGCAGAAGCTGCCAAATTGAAATCA
GATACTATTCAACAAGCTATCGACCGTTATCTCAAATTCGAAGAGGAAAT
GGGCCAGAAGAACCATTTCAATGCTATTCCACCTAAAGGTTCACAACCCT
GAAgctaagtttttattttttattaattgcATTGTTGATGTAGGAAAAAG
TTTAAATCAtgaattaaaaagattttttgaatgtACCAAATATTAAATTC
TGTGTCATTCGAATATCACAAGATTTGGTCatttagaaattaa Coding sequence (CDS) from alignment at scaffold_243:735556..741948+ >TCONS_00054572 ID=TCONS_00054572|Name=TCONS_00054572|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at scaffold_243:735556..741948+ (Clytia hemisphaerica)
ATGAGgTCCATATCGATTACTTTGTTGCTTTTGGCAAGTTTTGTTTGTAT
GCATTCAGCAAATCCTGTTCTTTCAAcCAAAGACTATTCGGGAAAAGATG
CAAGAATAATCACAGGAGATATCATGACTACAGcaaactttttgtttaaa
agacACATTCATGAAATAGCAGAATTGAATGCTGCAGAAGCTGCCAAATT
GAAATCAGATACTATTCAACAAGCTATCGACCGTTATCTCAAATTCGAAG
AGGAAATGGGCCAGAAGAACCATTTCAATGCTATTCCACCTAAAGGTTCA
CAACCCTGAATGAGgTCCATATCGATTACTTTGTTGCTTTTGGCAAGTTT
TGTTTGTATGCATTCAGCAAATCCTGTTCTTTCAAcCAAAGACTATTCGG
GAAAAGATGCAAGAATAATCACAGGAGATATCATGACTACAGcaaacttt
ttgtttaaaagacACATTCATGAAATAGCAGAATTGAATGCTGCAGAAGC
TGCCAAATTGAAATCAGATACTATTCAACAAGCTATCGACCGTTATCTCA
AATTCGAAGAGGAAATGGGCCAGAAGAACCATTTCAATGCTATTCCACCT
AAAGGTTCACAACCCTGAATGAGgTCCATATCGATTACTTTGTTGCTTTT
GGCAAGTTTTGTTTGTATGCATTCAGCAAATCCTGTTCTTTCAAcCAAAG
ACTATTCGGGAAAAGATGCAAGAATAATCACAGGAGATATCATGACTACA
GcaaactttttgtttaaaagacACATTCATGAAATAGCAGAATTGAATGC
TGCAGAAGCTGCCAAATTGAAATCAGATACTATTCAACAAGCTATCGACC
GTTATCTCAAATTCGAAGAGGAAATGGGCCAGAAGAACCATTTCAATGCT
ATTCCACCTAAAGGTTCACAACCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054572-exon-scaffold_243-1491911889:735556..735856 | TCONS_00054572-exon-scaffold_243-1491911889:735556..735856 | Clytia hemisphaerica | exon |
| TCONS_00054572-exon-scaffold_243-1510915933:735556..735856 | TCONS_00054572-exon-scaffold_243-1510915933:735556..735856 | Clytia hemisphaerica | exon |
| TCONS_00054572-exon-scaffold_243-1575043694:735556..735856 | TCONS_00054572-exon-scaffold_243-1575043694:735556..735856 | Clytia hemisphaerica | exon |
| TCONS_00054572-exon-scaffold_243-1491911889:736274..736344 | TCONS_00054572-exon-scaffold_243-1491911889:736274..736344 | Clytia hemisphaerica | exon |
| TCONS_00054572-exon-scaffold_243-1510915933:736274..736344 | TCONS_00054572-exon-scaffold_243-1510915933:736274..736344 | Clytia hemisphaerica | exon |
| TCONS_00054572-exon-scaffold_243-1575043694:736274..736344 | TCONS_00054572-exon-scaffold_243-1575043694:736274..736344 | Clytia hemisphaerica | exon |
| TCONS_00054572-exon-scaffold_243-1491911889:741575..741948 | TCONS_00054572-exon-scaffold_243-1491911889:741575..741948 | Clytia hemisphaerica | exon |
| TCONS_00054572-exon-scaffold_243-1510915933:741575..741948 | TCONS_00054572-exon-scaffold_243-1510915933:741575..741948 | Clytia hemisphaerica | exon |
| TCONS_00054572-exon-scaffold_243-1575043694:741575..741948 | TCONS_00054572-exon-scaffold_243-1575043694:741575..741948 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:735556..741948 + |
Blast
The following BLAST results are available for this feature:
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