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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054576 ID=TCONS_00054576|Name=TCONS_00054576|organism=Clytia hemisphaerica|type=transcript|length=2317bpRun BLAST on NCBI protein sequence of TCONS_00054576-protein >TCONS_00054576-protein ID=TCONS_00054576-protein|Name=TCONS_00054576-protein|organism=Clytia hemisphaerica|type=polypeptide|length=654bp MLKSKVFVKKTRRGKVVKVVREHYLRDDIWCGSKACTQCESTNADTEVLSRun BLAST on NCBI transcript from alignment at scaffold_243:801287..819892+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054576 ID=TCONS_00054576|Name=TCONS_00054576|organism=Clytia hemisphaerica|type=transcript|length=18606bp|location=Sequence derived from alignment at scaffold_243:801287..819892+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_243:801287..819892+ >TCONS_00054576 ID=TCONS_00054576|Name=TCONS_00054576|organism=Clytia hemisphaerica|type=CDS|length=37335bp|location=Sequence derived from alignment at scaffold_243:801287..819892+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00054576 vs. Swiss-Prot (Human)
Match: RRP44 (Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2) HSP 1 Score: 755.362 bits (1949), Expect = 0.000e+0 Identity = 384/660 (58.18%), Postives = 500/660 (75.76%), Query Frame = 2
Query: 353 MLKSXXXXXXXXXXXXXXXXXEHYLRDDIWCGSKACTQCESTNADTEVLSDLPGSVSSLCDFNHYVVLDTNAVLHQMDVLEDPVFQNVILLQTVLQEVKHQSYTAYKRIRELISVKERNFYVFCNEHHRDTFVERRKSESPNDYNDRMIRVASKWYNKHLKEFGKDDQDERISIVLLTNDIKNKERAMEEGIEVYTVHEYVKSLRGYEHLVEKLARATFKSSD---GKVLFPEHLPLSAIQTGLRTKKFLQGTFFASRENYLEGTVRIPG---REKEIFVQGLVSLNRAVQDDIVAVELLPESQWAAPSSXXXXXXXXXXXXXXXXQIVXXXXXXXXXXXXXXXSCRVVGIIKRNWRPYCGMLSPNGNAKGLKHMFIAADRQIPRIMIESRQGELLRTKKIIVSIDAWPRNSRYPIGHYVRDLGDCGDKETENQVLLLEHDIHHQPFSQQVLDDLPKMPWVITEQDLAERRDLRELNICSVDPPGCTDIDDALHCRVLENGNFECGVHIADVTHFIKPNTHIDEEAQSRGTTVYLVDQRIDMIPELLSSNLCSLHEKVERFAFSCVWELTPNADIVKVEFFKSIIASKAAMTYAEAQMMIDDTNRQDDVPTSLRQLNTLAKKLRQKRLDAGALTLASTEIRFNIDSETHDPIDLQSKQLR 2314
MLKSK F+KKTR G V+K+VREHYLRDDI CG+ C C + + SS+C HY++ DTN +LHQ+DVLEDP +NVI+LQTVLQEV+++S YKRIR++ + +E++FY F NEHHR+T+VE+ + E+ ND NDR IRVA+KWYN+HLK+ D+Q + ++ +TND +NKE+A+EEGI +T EYVKSL L+++LA + + ++ GK++F EHLPLS +Q G+++ +LQGTF ASRENYLE TV I G KEI +QGL LNRAV +DIVAVELLP+SQW APSS+VL ++ + + E+E+ + L+ +++ K + RVVGIIKRNWRPYCGMLS + + +H+F AD++IPRI IE+RQ L ++IIV+ID WPRNSRYP GH+VR+LGD G+KETE +VLLLEHD+ HQPFSQ VL LPKMPW ITE+D+ R DLR L ICSVDPPGCTDIDDALHCR LENGN E GVHIADV+HFI+P +D+E+ RGTTVYL ++RIDM+PELLSSNLCSL V+R AFSC+WE+ NA+I+K +F KS+I SKA++TYAEAQ+ ID N DD+ TSLR LN LAK L+++R++ GALTL+S E+RF++DSETHDPIDLQ+K+LR
Sbjct: 1 MLKSKTFLKKTRAGGVMKIVREHYLRDDIGCGAPGCAACGGAHEGPALEPQPQDPASSVCPQPHYLLPDTNVLLHQIDVLEDPAIRNVIVLQTVLQEVRNRSAPVYKRIRDVTNNQEKHFYTFTNEHHRETYVEQEQGENANDRNDRAIRVAAKWYNEHLKKMSADNQ---LQVIFITNDRRNKEKAIEEGIPAFTCEEYVKSLTANPELIDRLACLSEEGNEIESGKIIFSEHLPLSKLQQGIKSGTYLQGTFRASRENYLEATVWIHGDNEENKEIILQGLKHLNRAVHEDIVAVELLPKSQWVAPSSVVLHDEGQNEEDVEKEEETERMLKTAVSEKMLKPTGRVVGIIKRNWRPYCGMLSKSDIKESRRHLFTPADKRIPRIRIETRQASTLEGRRIIVAIDGWPRNSRYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPWSITEKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCIWEMNHNAEILKTKFTKSVINSKASLTYAEAQLRIDSANMNDDITTSLRGLNKLAKILKKRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELR 657 The following BLAST results are available for this feature:
BLAST of TCONS_00054576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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