TCONS_00054577 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054577
Unique NameTCONS_00054577
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1138

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054577 ID=TCONS_00054577|Name=TCONS_00054577|organism=Clytia hemisphaerica|type=transcript|length=1138bp
NNCACTTTCCAGAACATGCAGTTCTTCGAAAACATCCCGTTCCCAACCCA
AGTATGTTTGAAACGCTCACCAAGTCTGCTACAAGTCTGGGAGTTGAGTT
GGACATAACCAATGGCAAATCTTTACAAGCGAGTTTAGACGGAGCAGTTT
TCCCAGATGATCCATACAAAAATGTCATGTTAAGAATCTTAACCACTCGT
TGTATGACAACTGCCCTTTACTTCTGTTCTGGAACTGATAAGTTTGACAA
CTTCTTTCACTTTGGTTTGGCTGCACCCATCTACACGCATTTCACTTCTC
CTATTAGAAGATACCCTGATGTGATGGTTCATCGTTTATTGGGAGTAGCT
TGTGGTGCTTACAACTCCTCTGCCGCTTTTGTTGATCAAGAGGCTGCTGA
GaAAGTGACAACGCACATGAATTATCGACACAAAATGGCGCAACACGCTG
GTCGAGCTTCGGTTAACTTACATACACAAattttcttcAAGAATCGAGTG
TGTGATGAAGAAGGTTACGTCATGTTTGTTCGAAAGAACGCACTGCAAGT
ACTTATTCCCAAATATGGTCTGGAAGGGACTGTTTATTTGTCCAAGAAGA
AAGAGTCAGAAGGACTTTTCAAGTTTGACGAAGAGGCACTGACCCAATCA
TTTGGTGACACGACAATTCATGTCTTTGATAAAGTCATCGTTCAAATgag
cattgaaaaaaaaactatacaATCCAGTGAAATGCAGCTTAAGCTCGTGC
GACCTAAGATCCCGGGATTATCGGTGGAACCCGTCGATTCCAAACTCGAT
GAACCCGACTCAAAACGACTCAAAAAGTGACTCATTTGATTCATATTTTT
TGCttttacgaaaaaaaattttatcacgTGTAAATGGTATTTTATACAAA
CGAGAAATATAAATCCTAAAAAGAGTCAATATTGATTCAACTACTGACGA
CTTTCATGACGTGAAAATGATCCGTCCCTAAAGAAATTGATCAAACAtcc
tttttgtttcatttttgtcaaagttttagCATAAAATCACAAAACGATAT
TTAAGTCCAAGTGTCAATGAATTGTCatgtttttgctaaaaaaactATTT
CGCTTTTATTTCATTTAATCCATTTTTTGACCCTTCAC
Run BLAST on NCBI

protein sequence of TCONS_00054577-protein

>TCONS_00054577-protein ID=TCONS_00054577-protein|Name=TCONS_00054577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
HFPEHAVLRKHPVPNPSMFETLTKSATSLGVELDITNGKSLQASLDGAVF
PDDPYKNVMLRILTTRCMTTALYFCSGTDKFDNFFHFGLAAPIYTHFTSP
IRRYPDVMVHRLLGVACGAYNSSAAFVDQEAAEKVTTHMNYRHKMAQHAG
RASVNLHTQIFFKNRVCDEEGYVMFVRKNALQVLIPKYGLEGTVYLSKKK
ESEGLFKFDEEALTQSFGDTTIHVFDKVIVQMSIEKKTIQSSEMQLKLVR
PKIPGLSVEPVDSKLDEPDSKRLKK
Run BLAST on NCBI

transcript from alignment at scaffold_243:820401..830390+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054577 ID=TCONS_00054577|Name=TCONS_00054577|organism=Clytia hemisphaerica|type=transcript|length=9990bp|location=Sequence derived from alignment at scaffold_243:820401..830390+ (Clytia hemisphaerica)
NNCACTTTCCAGAACATGCAGTTCTTCGAAAACATCCCGTTCCCAACCCA
AGTATGTTTGAAACGCTCACCAAGTCTGCTACAAGTCTGGTAAGTGGTGA
TGGTTAGTGTCAAGTTcagaaattgatgaaaaatgctTTCGTTCTACTAT
GCAATAGGGCATCAATCAGCCTCAAAATTCTATGAATTCTTAATAATTAC
TTTAAATTCCTTCTTGGATTTCTTCGTTGTAGGGAGTTGAGTTGGACATA
ACCAATGGCAAATCTTTACAAGCGAGTTTAGACGGAGCAGTTTTCCCAGA
TGATCCATACAAAAATGTCATGTTAAGAATCTTAACCACTCGTTGTATGA
CAACTGCCCTTTACTTCTGTTCTGGAACTGATAAGTTTGACAACTTCTTT
CACTTTGGTTTGGCTGCACCCATCTACACGCATTTCACTTCTCCTATTAG
AAGGTATTACTTATTTTAATTGGCCCAGCGCGGTTAGCGtaagggccttt
catttgcactGTGCCCGCTGTAAGTAACTCGCATGGTAGACGGAGCTCGT
TTTATTATTTGAGGAAAACAAAGATTACAGGCTAATCATCAATTCTTTGC
CGCGGAAAGTCATatacttttcaaccaatcaatggtttaactcactaaaa
gaatTTATTCAGCGATAAGAGAATgttaatctttagtaagtgtgATCTAA
TTCTACTCAAACTTTATGGAACTAATAGATTCTGTCTTGTTTTCATCTTT
GACGTTTGACTGCTTCAGACACACGTTTTTTTACCAGTTGTAACTATCAT
TATTGATGCTGAAAGTAGTTTTTCCTGCTGATCCTGTGGGTATTTATTAC
AATAGTGCAAATACAAACATCCATATCATTTGGTGCTGACTGTAGTTTCT
CGCTCAGTCGCGAATCTGCTCCCTGCTATCATCATATACATTTCTTTCAA
AAGGTAATTAATTAAATCattgagacatttttttaatataggcgactatc
aaaaatatgttctgttTGTGTCAGCCGACCGACCAAGAAATTGGCAGACA
AAGATTCCAAGTCTGACAAGTCGGAAAATTGTTGCAATTTTTCATCGAGC
GAGCGAATAAATACTAAAAACTATACTTTGGAATCACCTAATTTACTACC
GTCATCCTTTACATCATTTACGGTTCAGTTATAACAATCACACCACCATC
TTCAAGACTTCGCTGGTCGCAAATGAATAATAAAGAAATGGCGGcttcaa
attgaaattgaaacggTGCACACCAAATTGCCAAATAAACTGGAATACAA
ATaccattttagaaaaatggacgGTTTCCACATCCATACAAATCTTTCGC
CCGCGGGCACTGCTTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNtctattgttctctgcgtacgtacaagggag
gagggggtatcaaatttttggaaaatctttttgtacgtactatatggacg
gccccctAAATATTTAAGCAAGTTCGAGAGCTCACAGAAACCAGTCCTTC
GTTTCACTCTGTATGTAatcatgaaaataaaacaataacaaaatgacACT
CTTGTGCGCTCGTAAAAAAAAGTAATGGCTGATGGTTttgacgcgaacgg
aacatattttcgaTTGCCGCCAAAATAATAATAGTGTCTATTAAATAGAT
TGTGCAGCTCCCTTTTAATGTTGTTGCTTGGAGAACGTAGCAATGTTGGT
CGGACCCCTCCACACCCTTCCCGTAATTCTggttttctggattttttttc
tgtgCAGTCTTTGCACTCCATCGCTTTTTAAaagggaggtaaacaaaccc
attTTGTTTGCTTTTCCTTAGGGAAGAGTGGTTTTTGgcctttttggcct
ttttctcAACTTCTATTGCatggaatttttgaaaacttcagTATGCTTTT
ACTACCAGTCAGCAATGCTCAAAGAAAAAGATAACAATTTTTACGTTTGC
TCTGAAAATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCTTTTTAGGAG
AGAATAGCAATTCAATAAGAAATTGAcgtttcatattttctttttcgttt
taggAATCAACGCCGAAACCACCGATCTGTCGGTGGAGTGTATACCATAC
TACACAGCCAAACAGCCAAATCTTACTAAACTTAGCTTACTAAACTTACT
AAACTCAATCAGCTTACTCGGTTAACAATACCGTTTTGAAATATACATTG
AAGTTTCCTGGGAGTTTCCTGTgtcattttttttgttcttcCCTTCGCAA
AGTAATCTTTAGGCGAAAAATCATGATATCGATCGAAGCTTATTGTAGTT
CGATCGGCAACTTTAATGGAACTACGTAGGCAATTTGACCTTCGTTCAAT
ATACCGAGGCAGGGTGGCCAGCGATACTGGAAATACTTCaaaatacttga
atatactggaaaaaaatattggtacttgattatactggagtttttgaaaa
aatgcccatttttccagtatatacttgaaaatgataaatNttcaaaattt
ttttttgtcggaCCCAACTCCAAATAATCATGAAACGACACTTGACCTAT
TTAAAATTGATggttgtatttttgaaaagtttgaaaggtAGCGACATGAA
AAGTGCTACTAACATGAAAAGTGCTCGCCAATTTTCTATGTTAAAAACTC
TTGCTAGAAAATAGACCTTCAGGGAGCAGTGAGCCATAGGGAAATGATTC
TAGAAATAAGAAGTNATgtataaattttccaaaattttatattcggaccc
aaccatggtgggtctTCCTGATAACAATGTATTGTACCCTATTTGTAAGG
TTGGACATTCTTGGTTGGTCTTATTCACTTAATAACCTATTTGATAtggc
ttttttaaaaaagatgaaCCCTAATGGgcatacaaaaaatgaaaaaaagt
aaaagtagaATCTTAGATATTCTTCAGCTCAAGTTATTTACTGCAAGATA
ACCCTcattgagaatttcaaaaatctagccTTTGGAGCATACAAAAANGC
AAATTgggaaaatgtcaatttttcagcaaagtttttgatttgactgaatt
gacTAAACTCTTATTTACACGGTTTATTTGTCTGCTAGAACTGGAAATGT
CTTAAAAGTCTTGAAGTCtgatatttgaagaaaatatttctgaTAGTCTC
TAGAAAACATTCTGGAAATATCGGAAAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTAAGAAAGGGAAGC
CCATAAAATTTCTGACAAATTGAGGATCCGGATATCCCTATTCTAACGAA
GCACCATACGTAAAGTTCAAAATATACTTGAATGTATTTGAATTTTGCAC
CTTCATATACTTGAAAATAGCAAAGATATACttgaaaattatcgaaaatA
CTCCAAAAAGTACTTGAATATACTTGATTTTCAATGACTAAAATCGCTGG
CCACCCTGCGAGGTTTTAAGGTTGGCTCGTCACTTCCCAATTAAGAGCTT
TCTAGACTTCTTAAACCCTTCCCTTTTTTAGCAGAATCTTTctaaagtaa
aagaaagtagaTCAGGGTTTTcgaataccttaaaggaaaaaattttggcg
gaaagaaaatttggcggatttgactgaaatttccggattttccgccatcc
gccaaattaaacattttgaaaatatgatctcttttaaggtgtttttgcta
ttttatcttaaggttaaatttttaagcgaccgctaaattaaattcccgcc
aaatttagttttttcgtccatccgtcaaattaaattccctctgaaaaaac
ttttttggccatccgccaaattaaattccctccaaaatttcttcctttaa
ggtagtgtttttcaaaaagtcgaaaTAATCTCTGTAATCTGAAATGAAGG
TGCGTTTTAGCTCCGAACCAGGTAGAAGAATGTGCAtgctaaaatcattt
tttataaaaaggctTTTAAGCGANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCTTAACGGAGGAACAGAGCATTTAATTTTTG
TAGAacgttatttttttcaaggagATAAAAAAAGCATTACTAATACATAC
GATGGAATAATTACAAGTAGTACTAATGACTGTAAAATGAAAGATCTATG
TTctacaaaataaaattatttcttaaaaaaaaactcctATAGCTCTATTA
CAATAAACATTGCCTTACATTCTTATAAAAAACGTACCTATTGGAAACAC
CTGAAAAGACGGAAATTGACCCATGTGCTGTTATTTCTATTAAAAAACAA
TATCTGAAATACTACAGATTATTCAGTGCCATCTACAAAACCTCTATAGA
AGGGAGGCTGCGTACCAGAAATATACATTTTAACAATATAAATATGAAAA
ACTATGTTCGAGAGGCCTTGAAGCGTCACGGGAGTAGGCCACTTGGTGTC
AGATTAATATTGTACATTCGATACAATGAAAGACGTCTTATGCTGGGCCG
TAATGCCGCCAGGCTACTTGTTCTGtctttgttttaacattttgtgAGCC
GGTGTGGTAATTGTATAACTTCACGGTGGGCACAAACAGACCCTGAAAAT
GGTGGGTTAATTGCTAAGTTTTAGGGAAAGTAGAAAAACTCAggagtttt
gaaagtttaaatcTTGGAATTTGAAATAGTTGAAATTAAGATGATAAAAC
TCGAAGTTTTAAATATTTGACCATTACTTTACAAATACATGACTCGAAAA
AGCTTGCATCTACATTGATTTCCGTGAAAACTTAGCCTACACAAGTAGCT
TACATAAAATTCCGGCTATCTAATCGCTTGAATTTTGTCTGAGCAATGGT
ACAGTTTGAGCTAACGAGCTAAGGGTTGTTACTTTTCTCTAATAGATACC
CTGATGTGATGGTTCATCGTTTATTGGGAGTAGCTTGTGGTGCTTACAAC
TCCTCTGCCGCTTTTGTTGATCAAGAGGCTGCTGAGGTTTGCACGAGTTA
TTTTCTCTCTATTTAGATATTTATTACAATGTtaagtttcttttgttttt
ggatCTAAATATTTGTGATTGATCGTTATTTCCTCTATATACTCCTGGAC
GAGCTTTTACGATAATTCTTTTAGCGAAACTTGGTGAAATGATTTTTAAT
TCTtctaatttttgtctttttgtgtttcttctttttctagaAAGTGACAA
CGCACATGAATTATCGACACAAAATGGCGCAACACGCTGGTCGAGCTTCG
GTTAACTTACATACACAAGTACGTCAATCTATCAATCAATTTCATAATCA
CTTAACTGACATGGAATGAGATTTGTATCACTATTAAGTAGCTTTATTTA
TATGCCTAATTCATATGTAGCATCGAAAACCGCAACAACTCAAGTTACCG
CAAAAATGATGAGGTATTATTTTGTAAGAAAATAGAAACTTAAATGCGGT
GGAGCCAACTCTCTGATTAccctttttctcttttttttaagattttcttc
AAGAATCGAGTGTGTGATGAAGAAGGTTACGTCATGTTTGTTCGAAAGAA
CGCACTGCAAGTACTTATTCCCAAATATGGTCTGGAAGGGACTGTTTATT
TGTCCAAGAAGAAAGAGTCAGAAGGACTTTTCAAGTTTGACGAAGAGGTA
CGCAAAGATACACATTTTGACATTCACCAGCGTCCCAAATACTAAATTTT
AACagtgatttttgtgattttattgCATGAAAATTTTGCGGCATGAAAAT
TTCGTGGTcattttaatttcgcggtttttttgccgaaaattgcatttcgc
ggtaTTTTCATTTCGTGGTTCAAGCCAAAATGTGAATTTCGCGgcatttt
aatttcgcggtccaggagaaaaagtgtatttcgtggcattttaatttcgc
ggttccgAAAAATCGAAAGGAAAAAATTGCATTGTAAAAATTTTTTAGCT
ATTCTTTATCACAAACAAGAAATAAGGCGTTGTTTTAGTCATCCTTTTGA
CTATATTTTCCTTTAAAGCAAGTTGAATCAGTTAAATGCATCCAAATAGT
TCCTCTCTGGTTCGAAAACCTCATCGTCGAAAATCGATCGTCATCATCAT
CGGTATCCTCATCATCGGTATCCTCATCTGATCCACAGGGTCAGTAACCA
TGGAGCTGCCGATCTGCCAAAAAAGCgggattttttatttatttcggGAA
AACCGGGAAAAAACCGgattttttatacattttaatttcgcggttgaccg
aaaaattcgtttttagcggcattttaatttcgcggtttttcagCCTCGAC
CgcgaaaccgcgaaattttcatGCAATAAAGTAGTTCAAAAACGTGTTTC
TGTCTCAATGTCTCGAGAGCTAATCATAGATTTATTTCGACATGCATGGT
TTTAATGAATATATAAATGAGTGAGTGAATGAATGGATATTTTTTATCTC
AGGCACTGACCCAATCATTTGGTGACACGACAATTCATGTCTTTGATAAA
GTCATCGTTCAAATgagcattgaaaaaaaaactatacaATCCAGTGAAAT
GCAGCTTAAGCTCGTGCGACCTAAGGTACGTTATTACATATATAGAGTTC
TATCACCACTTAATAATTTAATGATACTGTGTCAAAATGTTAACTAAGTC
GTGTATTATTGATCAAATTGTCGTTTCTTTGGAAAGATTGTTTGGAATTT
CTGGAATGAACTTTTTGAGAGTATCGTCTACGATTGCTATTCAGATTCTC
ACCAAGGATTAAttaaatttattgaatatttcaagcTTTACTGCTGTGAC
CATGATGAAACCCTTTATTatgaaagtcaaaaataaagctaATCAATTCC
TTTATAAAACATCTCATCTATACGTTGGTTCACTcgatcaaaacattctt
ttataaCGTTATAGAAGCTCGTGAACATATTGAAATGTACTCTTCTCTCT
CTTATTCTAGATCCCGGGATTATCGGTGGAACCCGTCGATTCCAAACTCG
ATGAACCCGACTCAAAACGACTCAAAAAGTGACTCATTTGATTCATATTT
TTTGCttttacgaaaaaaaattttatcacgTGTAAATGGTATTTTATACA
AACGAGAAATATAAATCCTAAAAAGAGTCAATATTGATTCAACTACTGAC
GACTTTCATGACGTGAAAATGATCCGTCCCTAAAGAAATTGATCAAACAt
cctttttgtttcatttttgtcaaagttttagCATAAAATCACAAAACGAT
ATTTAAGTCCAAGTGTCAATGAATTGTCatgtttttgctaaaaaaactAT
TTCGCTTTTATTTCATTTAATCCATTTTTTGACCCTTCAC

Coding sequence (CDS) from alignment at scaffold_243:820401..830390+

>TCONS_00054577 ID=TCONS_00054577|Name=TCONS_00054577|organism=Clytia hemisphaerica|type=CDS|length=5796bp|location=Sequence derived from alignment at scaffold_243:820401..830390+ (Clytia hemisphaerica)
CACTTTCCAGAACATGCAGTTCTTCGAAAACATCCCGTTCCCAACCCAAG
TATGTTTGAAACGCTCACCAAGTCTGCTACAAGTCTGGGAGTTGAGTTGG
ACATAACCAATGGCAAATCTTTACAAGCGAGTTTAGACGGAGCAGTTTTC
CCAGATGATCCATACAAAAATGTCATGTTAAGAATCTTAACCACTCGTTG
TATGACAACTGCCCTTTACTTCTGTTCTGGAACTGATAAGTTTGACAACT
TCTTTCACTTTGGTTTGGCTGCACCCATCTACACGCATTTCACTTCTCCT
ATTAGAAGATACCCTGATGTGATGGTTCATCGTTTATTGGGAGTAGCTTG
TGGTGCTTACAACTCCTCTGCCGCTTTTGTTGATCAAGAGGCTGCTGAGa
AAGTGACAACGCACATGAATTATCGACACAAAATGGCGCAACACGCTGGT
CGAGCTTCGGTTAACTTACATACACAAattttcttcAAGAATCGAGTGTG
TGATGAAGAAGGTTACGTCATGTTTGTTCGAAAGAACGCACTGCAAGTAC
TTATTCCCAAATATGGTCTGGAAGGGACTGTTTATTTGTCCAAGAAGAAA
GAGTCAGAAGGACTTTTCAAGTTTGACGAAGAGGCACTGACCCAATCATT
TGGTGACACGACAATTCATGTCTTTGATAAAGTCATCGTTCAAATgagca
ttgaaaaaaaaactatacaATCCAGTGAAATGCAGCTTAAGCTCGTGCGA
CCTAAGATCCCGGGATTATCGGTGGAACCCGTCGATTCCAAACTCGATGA
ACCCGACTCAAAACGACTCAAAAAGTGACACTTTCCAGAACATGCAGTTC
TTCGAAAACATCCCGTTCCCAACCCAAGTATGTTTGAAACGCTCACCAAG
TCTGCTACAAGTCTGGGAGTTGAGTTGGACATAACCAATGGCAAATCTTT
ACAAGCGAGTTTAGACGGAGCAGTTTTCCCAGATGATCCATACAAAAATG
TCATGTTAAGAATCTTAACCACTCGTTGTATGACAACTGCCCTTTACTTC
TGTTCTGGAACTGATAAGTTTGACAACTTCTTTCACTTTGGTTTGGCTGC
ACCCATCTACACGCATTTCACTTCTCCTATTAGAAGATACCCTGATGTGA
TGGTTCATCGTTTATTGGGAGTAGCTTGTGGTGCTTACAACTCCTCTGCC
GCTTTTGTTGATCAAGAGGCTGCTGAGaAAGTGACAACGCACATGAATTA
TCGACACAAAATGGCGCAACACGCTGGTCGAGCTTCGGTTAACTTACATA
CACAAattttcttcAAGAATCGAGTGTGTGATGAAGAAGGTTACGTCATG
TTTGTTCGAAAGAACGCACTGCAAGTACTTATTCCCAAATATGGTCTGGA
AGGGACTGTTTATTTGTCCAAGAAGAAAGAGTCAGAAGGACTTTTCAAGT
TTGACGAAGAGGCACTGACCCAATCATTTGGTGACACGACAATTCATGTC
TTTGATAAAGTCATCGTTCAAATgagcattgaaaaaaaaactatacaATC
CAGTGAAATGCAGCTTAAGCTCGTGCGACCTAAGATCCCGGGATTATCGG
TGGAACCCGTCGATTCCAAACTCGATGAACCCGACTCAAAACGACTCAAA
AAGTGACACTTTCCAGAACATGCAGTTCTTCGAAAACATCCCGTTCCCAA
CCCAAGTATGTTTGAAACGCTCACCAAGTCTGCTACAAGTCTGGGAGTTG
AGTTGGACATAACCAATGGCAAATCTTTACAAGCGAGTTTAGACGGAGCA
GTTTTCCCAGATGATCCATACAAAAATGTCATGTTAAGAATCTTAACCAC
TCGTTGTATGACAACTGCCCTTTACTTCTGTTCTGGAACTGATAAGTTTG
ACAACTTCTTTCACTTTGGTTTGGCTGCACCCATCTACACGCATTTCACT
TCTCCTATTAGAAGATACCCTGATGTGATGGTTCATCGTTTATTGGGAGT
AGCTTGTGGTGCTTACAACTCCTCTGCCGCTTTTGTTGATCAAGAGGCTG
CTGAGaAAGTGACAACGCACATGAATTATCGACACAAAATGGCGCAACAC
GCTGGTCGAGCTTCGGTTAACTTACATACACAAattttcttcAAGAATCG
AGTGTGTGATGAAGAAGGTTACGTCATGTTTGTTCGAAAGAACGCACTGC
AAGTACTTATTCCCAAATATGGTCTGGAAGGGACTGTTTATTTGTCCAAG
AAGAAAGAGTCAGAAGGACTTTTCAAGTTTGACGAAGAGGCACTGACCCA
ATCATTTGGTGACACGACAATTCATGTCTTTGATAAAGTCATCGTTCAAA
TgagcattgaaaaaaaaactatacaATCCAGTGAAATGCAGCTTAAGCTC
GTGCGACCTAAGATCCCGGGATTATCGGTGGAACCCGTCGATTCCAAACT
CGATGAACCCGACTCAAAACGACTCAAAAAGTGACACTTTCCAGAACATG
CAGTTCTTCGAAAACATCCCGTTCCCAACCCAAGTATGTTTGAAACGCTC
ACCAAGTCTGCTACAAGTCTGGGAGTTGAGTTGGACATAACCAATGGCAA
ATCTTTACAAGCGAGTTTAGACGGAGCAGTTTTCCCAGATGATCCATACA
AAAATGTCATGTTAAGAATCTTAACCACTCGTTGTATGACAACTGCCCTT
TACTTCTGTTCTGGAACTGATAAGTTTGACAACTTCTTTCACTTTGGTTT
GGCTGCACCCATCTACACGCATTTCACTTCTCCTATTAGAAGATACCCTG
ATGTGATGGTTCATCGTTTATTGGGAGTAGCTTGTGGTGCTTACAACTCC
TCTGCCGCTTTTGTTGATCAAGAGGCTGCTGAGaAAGTGACAACGCACAT
GAATTATCGACACAAAATGGCGCAACACGCTGGTCGAGCTTCGGTTAACT
TACATACACAAattttcttcAAGAATCGAGTGTGTGATGAAGAAGGTTAC
GTCATGTTTGTTCGAAAGAACGCACTGCAAGTACTTATTCCCAAATATGG
TCTGGAAGGGACTGTTTATTTGTCCAAGAAGAAAGAGTCAGAAGGACTTT
TCAAGTTTGACGAAGAGGCACTGACCCAATCATTTGGTGACACGACAATT
CATGTCTTTGATAAAGTCATCGTTCAAATgagcattgaaaaaaaaactat
acaATCCAGTGAAATGCAGCTTAAGCTCGTGCGACCTAAGATCCCGGGAT
TATCGGTGGAACCCGTCGATTCCAAACTCGATGAACCCGACTCAAAACGA
CTCAAAAAGTGACACTTTCCAGAACATGCAGTTCTTCGAAAACATCCCGT
TCCCAACCCAAGTATGTTTGAAACGCTCACCAAGTCTGCTACAAGTCTGG
GAGTTGAGTTGGACATAACCAATGGCAAATCTTTACAAGCGAGTTTAGAC
GGAGCAGTTTTCCCAGATGATCCATACAAAAATGTCATGTTAAGAATCTT
AACCACTCGTTGTATGACAACTGCCCTTTACTTCTGTTCTGGAACTGATA
AGTTTGACAACTTCTTTCACTTTGGTTTGGCTGCACCCATCTACACGCAT
TTCACTTCTCCTATTAGAAGATACCCTGATGTGATGGTTCATCGTTTATT
GGGAGTAGCTTGTGGTGCTTACAACTCCTCTGCCGCTTTTGTTGATCAAG
AGGCTGCTGAGaAAGTGACAACGCACATGAATTATCGACACAAAATGGCG
CAACACGCTGGTCGAGCTTCGGTTAACTTACATACACAAattttcttcAA
GAATCGAGTGTGTGATGAAGAAGGTTACGTCATGTTTGTTCGAAAGAACG
CACTGCAAGTACTTATTCCCAAATATGGTCTGGAAGGGACTGTTTATTTG
TCCAAGAAGAAAGAGTCAGAAGGACTTTTCAAGTTTGACGAAGAGGCACT
GACCCAATCATTTGGTGACACGACAATTCATGTCTTTGATAAAGTCATCG
TTCAAATgagcattgaaaaaaaaactatacaATCCAGTGAAATGCAGCTT
AAGCTCGTGCGACCTAAGATCCCGGGATTATCGGTGGAACCCGTCGATTC
CAAACTCGATGAACCCGACTCAAAACGACTCAAAAAGTGACACTTTCCAG
AACATGCAGTTCTTCGAAAACATCCCGTTCCCAACCCAAGTATGTTTGAA
ACGCTCACCAAGTCTGCTACAAGTCTGGGAGTTGAGTTGGACATAACCAA
TGGCAAATCTTTACAAGCGAGTTTAGACGGAGCAGTTTTCCCAGATGATC
CATACAAAAATGTCATGTTAAGAATCTTAACCACTCGTTGTATGACAACT
GCCCTTTACTTCTGTTCTGGAACTGATAAGTTTGACAACTTCTTTCACTT
TGGTTTGGCTGCACCCATCTACACGCATTTCACTTCTCCTATTAGAAGAT
ACCCTGATGTGATGGTTCATCGTTTATTGGGAGTAGCTTGTGGTGCTTAC
AACTCCTCTGCCGCTTTTGTTGATCAAGAGGCTGCTGAGaAAGTGACAAC
GCACATGAATTATCGACACAAAATGGCGCAACACGCTGGTCGAGCTTCGG
TTAACTTACATACACAAattttcttcAAGAATCGAGTGTGTGATGAAGAA
GGTTACGTCATGTTTGTTCGAAAGAACGCACTGCAAGTACTTATTCCCAA
ATATGGTCTGGAAGGGACTGTTTATTTGTCCAAGAAGAAAGAGTCAGAAG
GACTTTTCAAGTTTGACGAAGAGGCACTGACCCAATCATTTGGTGACACG
ACAATTCATGTCTTTGATAAAGTCATCGTTCAAATgagcattgaaaaaaa
aactatacaATCCAGTGAAATGCAGCTTAAGCTCGTGCGACCTAAGATCC
CGGGATTATCGGTGGAACCCGTCGATTCCAAACTCGATGAACCCGACTCA
AAACGACTCAAAAAGTGACACTTTCCAGAACATGCAGTTCTTCGAAAACA
TCCCGTTCCCAACCCAAGTATGTTTGAAACGCTCACCAAGTCTGCTACAA
GTCTGGGAGTTGAGTTGGACATAACCAATGGCAAATCTTTACAAGCGAGT
TTAGACGGAGCAGTTTTCCCAGATGATCCATACAAAAATGTCATGTTAAG
AATCTTAACCACTCGTTGTATGACAACTGCCCTTTACTTCTGTTCTGGAA
CTGATAAGTTTGACAACTTCTTTCACTTTGGTTTGGCTGCACCCATCTAC
ACGCATTTCACTTCTCCTATTAGAAGATACCCTGATGTGATGGTTCATCG
TTTATTGGGAGTAGCTTGTGGTGCTTACAACTCCTCTGCCGCTTTTGTTG
ATCAAGAGGCTGCTGAGaAAGTGACAACGCACATGAATTATCGACACAAA
ATGGCGCAACACGCTGGTCGAGCTTCGGTTAACTTACATACACAAatttt
cttcAAGAATCGAGTGTGTGATGAAGAAGGTTACGTCATGTTTGTTCGAA
AGAACGCACTGCAAGTACTTATTCCCAAATATGGTCTGGAAGGGACTGTT
TATTTGTCCAAGAAGAAAGAGTCAGAAGGACTTTTCAAGTTTGACGAAGA
GGCACTGACCCAATCATTTGGTGACACGACAATTCATGTCTTTGATAAAG
TCATCGTTCAAATgagcattgaaaaaaaaactatacaATCCAGTGAAATG
CAGCTTAAGCTCGTGCGACCTAAGATCCCGGGATTATCGGTGGAACCCGT
CGATTCCAAACTCGATGAACCCGACTCAAAACGACTCAAAAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034398XLOC_034398Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054577-proteinTCONS_00054577-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054577-exon-scaffold_243-1491911889:820401..820489TCONS_00054577-exon-scaffold_243-1491911889:820401..820489Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1510915933:820401..820489TCONS_00054577-exon-scaffold_243-1510915933:820401..820489Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1575043694:820401..820489TCONS_00054577-exon-scaffold_243-1575043694:820401..820489Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1491911889:820633..820853TCONS_00054577-exon-scaffold_243-1491911889:820633..820853Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1510915933:820633..820853TCONS_00054577-exon-scaffold_243-1510915933:820633..820853Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1575043694:820633..820853TCONS_00054577-exon-scaffold_243-1575043694:820633..820853Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1491911889:827946..828036TCONS_00054577-exon-scaffold_243-1491911889:827946..828036Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1510915933:827946..828036TCONS_00054577-exon-scaffold_243-1510915933:827946..828036Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1575043694:827946..828036TCONS_00054577-exon-scaffold_243-1575043694:827946..828036Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1491911889:828241..828318TCONS_00054577-exon-scaffold_243-1491911889:828241..828318Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1510915933:828241..828318TCONS_00054577-exon-scaffold_243-1510915933:828241..828318Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1575043694:828241..828318TCONS_00054577-exon-scaffold_243-1575043694:828241..828318Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1491911889:828542..828697TCONS_00054577-exon-scaffold_243-1491911889:828542..828697Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1510915933:828542..828697TCONS_00054577-exon-scaffold_243-1510915933:828542..828697Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1575043694:828542..828697TCONS_00054577-exon-scaffold_243-1575043694:828542..828697Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1491911889:829503..829625TCONS_00054577-exon-scaffold_243-1491911889:829503..829625Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1510915933:829503..829625TCONS_00054577-exon-scaffold_243-1510915933:829503..829625Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1575043694:829503..829625TCONS_00054577-exon-scaffold_243-1575043694:829503..829625Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1491911889:830011..830390TCONS_00054577-exon-scaffold_243-1491911889:830011..830390Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1510915933:830011..830390TCONS_00054577-exon-scaffold_243-1510915933:830011..830390Clytia hemisphaericaexon
TCONS_00054577-exon-scaffold_243-1575043694:830011..830390TCONS_00054577-exon-scaffold_243-1575043694:830011..830390Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:820401..830390 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.62367	8.3791	11.8477	11.7603	35.4837	24.4177	28.477	31.9458	30.3148	30.0956	31.03	28.2315	45.8949	52.6475	37.0598	39.7708	38.1577	41.5787	25.819	24.7238	41.3912	35.3356	49.9171	44.9838	47.6034	54.2679	31.3666	48.1731	51.7121	54.9753
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR033770RRP44_S1
IPR022966RNase_II/R_CS
IPR012340NA-bd_OB-fold
Blast
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BLAST of TCONS_00054577 vs. Swiss-Prot (Human)
Match: RRP44 (Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 6.141e-84
Identity = 135/266 (50.75%), Postives = 180/266 (67.67%), Query Frame = 3 
Query:    6 FPEHAVLRKHPVPNPSMFETLTKSATSLGVELDITNGKSLQASLDGAVFPDDPYKNVMLRILTTRCMTTALYFCSGTDKFDNFFHFGLAAPIYTHFTSPIRRYPDVMVHRLLGVACGAYNSSAAFVDQEAAEKVTTHMNYRHKMAQHAGRASVNLHTQIFFKNR-VCDEEGYVMFVRKNALQVLIPKYGLEGTVYLSKKKESEGLFKFDEEALTQSFGDTTIHVFDKVIVQMSIEKKTIQSSEMQLKLVRPKIPGLSVEPVDSKLD 800
            F EHA+LRKHP P PS +E L K+A S  +E+     KSL  SLD A  P  PY N +LRIL TRCM  A+YFCSG D  ++F H+GLA+PIYTHFTSPIRRY DV+VHRLL VA GA  +     D+     +  ++N+RHKMAQ+A RASV  HTQ+FFK++ +  EE Y++FVRKNA+ VLIPKYGLEGTV+  +K +      +D+E  +    DT  HVFDKV V++ ++   +Q  ++++ LV P+IPG+S+    S +D
Sbjct:  682 FSEHALLRKHPAPPPSNYEILVKAARSRNLEIKTDTAKSLAESLDQAESPTFPYLNTLLRILATRCMMQAVYFCSGMD--NDFHHYGLASPIYTHFTSPIRRYADVIVHRLLAVAIGADCTYPELTDKHKLADICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAYILFVRKNAIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIEDTVFHVFDKVKVKIMLDSSNLQHQKIRMSLVEPQIPGISIPTDTSNMD 945
The following BLAST results are available for this feature:
BLAST of TCONS_00054577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RRP446.141e-8450.75Exosome complex exonuclease RRP44 OS=Homo sapiens ... [more]
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