TCONS_00054578 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054578
Unique NameTCONS_00054578
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1897

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054578 ID=TCONS_00054578|Name=TCONS_00054578|organism=Clytia hemisphaerica|type=transcript|length=1897bp
TGTAATCAAGTATCCATCTCCATTTCAGGTGAAAACATATATATAAAATT
CCAAGATGCCGAGTACTGCCGATCAAAACGAACTCGCTAAAGAAGATTTA
CAGCACAAATTAGGTCATGAAAGAGGACATGGTGCGGAGTGCTTGAAATG
TGGACCAAAATGTGAGGGGCttgatcttcatttttggagaaaaatctGTA
AGAATTGTTATTGTCGGTATGACGAACATGACGtcaaaagtgaagaagaa
atacATCATGGcattgtcaaaaatattttccgcaAAGAGAGAGGGCTCTC
GGATGAAATCGGAAAACTACAAATCTTTGATCCAGAAAAACAACCAGCCA
TTGCTGAACAAGTCAAGGCGAACTTTATTAAAGTACCTGAAGTCTCCTCA
CCTTTCGCTATGtcgaaatatttgaaacaacTTCCAAAAGAGAAAGATGC
ATTCCAAGGCGAGGCAGGTCAACAATATCGCAATCaccaactacaacaac
aactACCAGCACACGATTTCGACCCTGCCTTTTGTAACAAGTTGAGTGAC
CAAGAAAAAGACCGGATGCAGAAGTTTACGGACGTCCGTGATGATGATGC
CGGACAAGGTGCCATCAAAGAAAAAACTGCTAAAGAAAAGACCCACTGGA
AATGTGAAAAGTGCGGCGAAAACTTGATGATCGGTGAAGTCGCCATATTT
GCTGAAAAAGCTGGTAAAGATAAATGTTGGCATCCCAATTGTTTCGTTTG
CGATACGTGTCAAGAACTGCTGGTGGATCTGATCTACTTTTTCAAAGACG
GAAAGATTTTTTGTGGACGCCATTATGGTGAATTAACACGTGTTCGATGT
GCTGCTTGCGATGAGttAATTTTCACGAAGGAATACACTCAAGCAGAAGA
TCAGAACTGGCATTTGCAGCACTTTTGTTGTTTGAAATGTGACAAAATGT
TGGGTGGTCAGAAATATGTGGCTCGTGATGGAAAACCATATTGTATGGGT
TGCTATGATACTACCTTTGCCAAAACTTGTCAAACTTGTAAGCAACGTAT
CGCCGCGGATGCGAAGAGAGTTTCATATAAAGACGCTAATTGGCATGCAA
GTGAAGAATGCTTCCGCTGTTTAGCATGCTCCGAACCCATGCTCGGTAAA
CAAttcatttataaaaacaaagacGTTTACTGCTCTGGGGCATGCGCGAG
AAAATAGAAGTCGTATTTAATTTCAATGGTGAGATTGCATACGAGTGATA
CTGTAAGATTCTTGACTTTCGAACGTCCTGAAATGTCCTCTCATGTTATC
TCGCCAATCTTTTCTTACTGAGTTTGTTCTAAAAGTGCATACAATTCTCA
AGGATAGCTCGATACGGTCTATTAACCTATTGATGGGATTGTGTACAATT
TCGAACAGACTTTTGCAAAATTTATTATATTGAGTTTATATATTTATTGG
ATCAAATTATAAAATCCTTTTTACATTTTGGTCGCTAGTCGATTATAATC
AATTTTTGTGTGTTTATATTATttggaatattttatttttgctatgttaC
TATTGCATATCACCTCCTTAACACTTAAcactgaaaatccttttcaagaC
AACACTTGAATTAGACAAAAACTTTGCAGTCAAAATGTCGCTCTGCAAGA
TAAGCCAGTCGAATATTATTTTTGTTCGGTTCAGAATGAGTAAGAAGATA
TTAATGCTTAAACCTGTAAATATATTTGATGTAGGGAATAGATTTAGATA
AtcactttttttagttttgaattttattttaattttcttgtACTTCATTC
TCATACGGGCAGGCACTTTTATCTACAATTAATCAAttcaaaaaagattg
aaagtttgaaatggAGTTTTATATTCTCGATCTTTTGTCTCGTTTTC
Run BLAST on NCBI

transcript from alignment at scaffold_243:830990..851460+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054578 ID=TCONS_00054578|Name=TCONS_00054578|organism=Clytia hemisphaerica|type=transcript|length=20471bp|location=Sequence derived from alignment at scaffold_243:830990..851460+ (Clytia hemisphaerica)
TGTAATCAAGTATCCATCTCCATTTCAGGTGAAAACATATATATAAAATT
CCAAGATGCCGAGTACTGCCGATCAAAACGAACTCGCTAAAGAAGATTTA
CAGGTAAAGTTTCGGCTTTGTCCGAACgggtgaattattttttcacTACA
GAAAAAGGGAGCTTGAAGCCCTAAATAGGCAAAAAAGGCCggggggttac
ttaggcaaaaatgggtgctgggtatgtgcgggcgGTAAGGTTCGGCTTtt
tacctttcaaagtctctctaaggggcgcaaaaatcagaaaaatttatatt
tagTCTCTATCTCTAAagggtaaatttttttatttagagtgtaaaatttt
gtaaaaagtctctctaaggataGGGAATTCTTCAATAATCgaaggaaatt
tttcaaaaaagtctctctaagggtcatcttttcagcaaaaattagtctct
ctaagggtcgcgGTTTTTGGAGGTCGCATCCGCACACATatacccctcat
ccgccaacccttagtaccccccccccccccacccctaatccccccccccc
cccgagatAGGGACGTACATGGAGAGATTGGGTTTATTTCTTTTCTCCAG
CATGCTATGCAGCATATTTTGCTCGAAATCTCTAAAAAGCTACTGCATGT
AAAattacaagcttctgattgttTTATGACCGACCGGGGTGTAAAAAACA
CGAAAAGAAAAGGGTGCGTAAATAGAGAATATgcgcgaaaaaaaaaacga
aaaaggaaAAAGCAAAATGGCGGAAGAAGAGGCGGTAGAGAAGGAAGTGA
TCAAAGCCACTGAGATAACGGTACGATGTTTTTGTTTATCTGAAGTAATT
GTTCATTCTCTAGAGCTCTAATCTGATAGTTTAATTAGCCGATAGTTTTA
GTATTATCCTGATCAGAAGAATAACAGACAGCATGTTGTGGCTCATGACA
TACTGTCAGTGAGAAAGTGTAGTTTTCAGAAGTGCGGCTAAATCCTGACA
ATGCGGATCTATTTTCCACTTCCTATCTCTcgatctccttttctattttc
tagtttctgagacttagtttctcatttctgactgagttttcatacctgtc
aatcatttgttcaTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNgcacagtgacaagccgttactagaaACCCTGGCCCTACATCGAA
gacgccaaaaaataaaaatttaaagtttccgCATTGTCAGGATTTAGCCG
CTTCTAGTTTTCAGGCCTCAACCCCGTTCATATTctgtaaacaaaatatt
tttttaacgtttttaaggTCACATTCTTTTCTGCAAAGACAGCTGGAATT
TTTGGAACTTTCTTAAAGCACAGGCCAGTGTTGGGTCATACTCGGGACTT
TTTTAAGTTCAAAATTGCCAAGTGGACCCCAGAAAGTTCAGGCCGTAGCA
TGCCGCCCGTAGGTTAGCTACCTTGGGgtcttttgaattgaattgttaat
tgaatatatttttgctgCAACGTAGCAGGATAACCCGCTAcaaaactagc
cgtattgtataggGTTGctaagcgatccagactccacctcaattcgcaag
ttgctagcgaaataagagacactctaaaaatccctctaataaagccgcta
tagagacagggtcgtaagagccttaatgccaaacacaccacataatccac
ggcggcacaacacccgccgccgccgcccGCGCATCACTCTTTGtctcctt
ctagttattctagtgtaaatggtgccttaataaaaaatcgaacgatattc
gtcaaatgatcgaacatttttattcaaatcacgaatcgtctgtcgaaatc
atcaaaacataaaaataaaacaaaaacaaaaatgtacaaagatggtttgt
tggttcttgggtagttttgatttaaaattcttgacaaattcgacaaattt
gattacctccgtacttctttatcatagaatatccacttgattTTGCAAGG
TAGGTTTCgttcttatctgatattccgatggcggattaacggccgcccac
gctaaagctctaaagggagcgggccaatttcccatcggagaggaatgttA
GGTTAGGTTAGGTTTAGTTTAGCTAACCTAAACCTAACCTAACCTaacat
tcctctccgatgggaaattggcccgcccgtttatttcaaattgaataaCA
TAAAGAAAGAAACTATGTACATAAGTTTTTAACCATCAGTGGCTCTCATG
CTATGTACACTttgcaagaaaaataaatgattaaaGATCAAAATGTTGgt
tccaaaaaaatgaaaatacaaaatatggAACAGTAAATGTTAACAGAAAT
AAAAGAGTTAAAATCTAAGGAAAAAATTTATatcagaaaatgataaaata
atagaaaaaaaggaaaaaaaacaaaaaacaaaacaaacaaacaaaaaatc
aaattatgtcaaaatgatAGCAAACAACACAAATACTCCAAATAAGAGAG
TAAGAAAGATGTAAAGACATGATTCAACAAAGAGATGAAAACGTGAATAA
GTACCTAGCtgagaattaaaaaaatgtaagGTCCCTCAATGGGCTCCaag
agtttttttttgagattatCAGTGAAGACTGATTTGGATTGTTCGATGTC
AAAAGTGTCAAGGCAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TGGACGAGatttatagctttatctgaaatTTTGATTAAGTCTGACATGCA
GGTGAGAGGTGAACCCCAGGCTGATATTCCATATGAAAGATGCAACTGGA
TGAAACTAAAATAAAGATTAGAAATGAGAGAATTTGGAATTAAGAACTTG
GTTGAATGTAAtaacagggtgtctacgggaccttgaaaaccttgaaaacc
ttgaaaaccttgaaaatgaaccaaccttgaaaaccttgaaaactatcaat
tttctgggaaaaaccttgaaaaccttgaaaaatcgttaaaaaccttgaaa
agcactaTCCAGTCATTCGAAAAGTAAGAAAAAGTAAAAAACCGCCTGCT
GCGCTAAACCTTTATAATATAACATTTAGAGAATTCCATATTTCCCTGTT
TCTGTTGCGATTCTGGCGCAACGAATGCAACATATTCTTTTACCATTAGC
TGagtttttgtcactaattttatgtttgcatgagccctaagaaatcgact
gttccccaattttcaaatcgcttcaggGCGTCTTGGAATAATGGCCATTC
ATCAATAACATTTTGAAGATTCCTTAAAAcaacttttttggaaattgatt
tttgtaaaaaaacaaaataaaaaacaaggcatgttttagccatttgaaag
agtcaaaatcaaaattttctctcgtcggcgcaaaccatgatTGCGCCTCC
TCGGTCACTGTAAACAATTGGTTttgcttctaattctttatttctacagt
tgGAAGACTAGGGAGCTGGATTATTTCTCTTTGTAGTGTTGTTCTCGAGA
GGGAGATAGGAGTTTAACTGTGGAAGTAATTCCCCAGGCACCAAAagcaa
ataaattttatttgctgtcctctattctgaaaaaaaataaaaaattcctg
TAAAGAGCCATGTCAACtgagtttcaaaaaatcttgaaagtgccaaagtt
tttgaccttgaaaaaccacttaaaaatgaccaaaaaaccttgaaaacctt
gaaaatttcgaaaaaaaatccgtagacaccctgaaTAAACCAATACCTCT
TGATACCTTGAGCTTTACAGCTATGGTCTGGTGAGACCAGTTTAGTTTGT
TGTCAATGAGGATACCAAGGTACTTCACCACTTCTTTACATTCAATTTCG
ATcccttgtaacttttgataggactAGAATAGAGAAAGTTTGATTTAGCA
AGATTTAAACTAAGTTCGTTTGACACAAGCCAGTCACTTATTTTCGAGAG
TTCTGTGTTTGTAGTGTCTGTAAGTAAGTGATTTCTTATCCTTATCTTTT
AAGAAAAGACAGGTGTCATCAGCGAACTGGACgaattcaaaagttttaga
GGATTTTAAAATGTCATTGAATGATGAACAGAAGGGGGCCAAGGATTGAT
CCCTGGGGTACACCACAGTTTATAGTTAATGGGTTTGATaaggaatttga
aattttgacacatTGCTTCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GACACATTGCTTCCTGTTACTGAGATAGGAACAGAACCAATCGTTTGTAA
CTCCTCTCACACCATAGTATTTAAGTTTTTGAAGGAGAATCTCATGACTG
ACTGTGTCAAACGCTTTTGCTAGGTCGAGGAAAATACAACAAGATTTATA
TTTCTTAGTGAGAGCCAGAGATACTTTTTCCATGAGATCCAGTATAGCCA
TGGATGTAGATTTGTTCTTCTGAAAGCCATACTgtgaattattaaatatt
ttgtgttttttaagaaaagaaGTTAAGCGCTTATGCATTAACTTTTCAAT
AAGCTTGTCGAATATTGGAAGAATAGAAATTGGTCGAAAATTTTTTGGGA
TTGATTGATCTCCACCTTTATGAAGAGGGATTACCTTAGCCAATTTGAGC
TTGTCTGGGAAAACACCTTCATTGAAAGAAGAATTGATTATATTAGAAAG
GGGTAATGATATTTCATCTTTCAGGTCTTTGATGATGCGAATCGGAAAGT
TGTACATGTCAATAGCTTTTCTGTGGTCGAGAGACTGAATTAGCTTACTT
ACCTCTTCTTCTGTTGTTTGAGAAAAGAAGAAACTTTTTAGAGGTTGATC
CATCTTTTTTCAATATTCagagaaatgagaatttttcttAGGTAGTTTTT
TAACGAGTTCTGGTGCTACATTCACATAGTATTTGTTGAAGATTTCACTG
ATTTCTGCTGGCTGTGTAATAAGTCTCCCATTTTTTAGAACANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNACAGATGTTGGTGTTATTGACCTTTTCTT
TCTATGTAGAATTAAATTGATAGCATCCCAATGACGtttgatgttgtttt
tgtttctttcgaAGAATGATTTAAAGTATTGGTATTTGCTCCTGCGAATT
TCATGGTTGATCTTTTTCCTGAGGATATTACGACTTTTCTTGTGTTCCGG
ATCTTTACTTTTGGAGTGTTTGTAGGAGAGAATATGTTTAGTTTTTAtca
tagaaattatattgtcaTTTATCCATGGCTTCGGATCGGAGTTATTTTTC
GGTTTAATTTCTTTCAAAGGTGCATATTTATCAATAACTCTGGAGAGATG
TTCATGAAATTCGTTAACGTCCTCGCAGTTTGTTATTTTGGTGATTAGGT
TTATGTTATGAACCTCCAATATCAATTGCTGTACGTTGTAGTTTGAAAAG
TCCCTTCTGAGTAGTGTTTGGTTGTAATAGTTATTGTTATCGATGTTGGT
TCTGAGAAAGTTTGGTAGATGGTCAGTGATGGGACACAGAAGATTCCCAC
TACAATCGATGCTGTCAAAGTCATTGAAGAAGATATTATCGATGAGAGCG
TACTTACCTTTGTCATTGATTCTTGTAGGTCCGACAATGTTAGTCAgtct
ttgatgtgccgcatcctcagtcgggttcaacagtcCTTGCCCGTAAACGT
GGAAATATTTCAGTTGGACCCGCAAAATTCCATattgtaaaccttccaga
tgctgaaaaattttcccgaatttcagagctttagcgtgttggaagaaaat
ttcaccatctgggtgccagataagtttcgttcactaaaagagcactcctt
ccGCCCGCACGACTTGCACGACCTTGCGcgacctctcattgattgacctt
atttgcggtttgtgtaatttacgatgcgcgatccaacgattcacgatgcg
cgatgcacgatccatgcatatattatgttaattattctaattatgcattt
acaggttttagtaatcacatattttaattccttcttttgtattcctggAA
AATAAAAGTATGCGCGTATATAATTTAagctcaacaatcaaatcacatca
aaacataaactttttttctttcttaaaaaaaaacgtttctcctattaaac
caaccaaatgcattgCATTGAGACAGGGCGAGACAGggttataaataaaa
atttacaatgtcgtggtaaagtagggaagacgttttttaatgaagagcgc
gtgtataaactcaccttttttgagaaagatcaaatgaattaacttgatca
tcaaacaaagaaaaagatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNtgcatcgtgcatcgtgaatcgttggatcgcgcatc
gtaaattacacaaaccgccTTATTTGATatatgatacttgctgttaaaag
tcgagggatgatgaagatcctttctgtcaccgttcaaactaatttttttt
catttaccagcaaaataaacatttaaaaccgaagaaccactgcttataga
ttgcttagatgcgtgccgcccacGCGGCAatctgatcaacttcagattct
aatccgtgtttcggcttccggtaattcttttgctgttcactgctagggta
caccattttaaaacggcatttttcgcagtcctagctaccaaatcGTGGCT
ttaagccaaaccattcaaggtcattttgataaaatcattggtttgaagat
gtgatttatatagcaaattttatagtaaattttcgcttgggatagaagtt
aaaggtacgtgcacaatatagcaaaactgcttcactcataaattcgcttc
gcaaaaatgtCAATGTCAACACCCAACATCCACCCAATcatcttaaattc
actttaattgtgctttgactttcgaaaaaatattatttaaaaactatgaa
tttatagcttttcagtgggcgtttttctagcgCTTCGTTGAtccgcaatt
tttgcgtcacactaACTTTCTCGGCcactcgtaataattatgcattgcca
aatttggttctccatgtcaagtcaggatcgatggtgacgtcacctaagca
taagaaagaaagaatttcgtcagttttatgcatatattctATAGACTAGT
CAGAATACcttcttttactcgcgggattgatggtaccTTTTCATAAATGA
AGCACAACGGAAAAAAACGAAGCTTCAAAAAGTTTcatatttccagtgag
taaacaattctgacaattaacgaaattgatgatgatggtttttttttggc
aaatgtctcgtattgggggttctagtcttgacccttaagcctacgcgaga
ttgaagcgtttgggtaaacgagacaagaCTTGAAAAAAGCtagtgttttg
aagcgcttccgtgaGATCGAAATATCGCTCTTTGTGACGCACTGCTAAAA
AACAAAAAGCCAGCCATATGCAAATTAGTCAAATTTGTCACTCGCGTGGA
AaattacacactcgttatttgttaccCCATTGGGCGATAGCGGTTAGGCG
GCAGGCGTTCTCCAATTCTCCGATCGGCGttcagtcattttgaatgaaaa
ctaaaaatttaaaaagggcgcgctatcagtgaaagttatcgtgacatgtt
atgacagaaagtatgattgataaacttggtggacttatcaaaacaaattt
gttgtcaaagagatttaacagtaagtgaaaatacagaccagatatcaaca
gtcccatgtttcgaccaatcgtcccaaNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNcccccccccggggttttaATGCTTTACTTGATAAC
AAAATCAACCTCTGTATTTAAAAAAGGATTtaccgggtggtccaaaaaac
atttccataaatttcaaatttaaacatAGATTGCTCTAATTGTGCTATCG
ACTTTAAATTTTGTATGGGTAAACTTTAACTTATTTCAGGgcactcctga
aaatttcaatattagaaacaaattttttgtaaagttatgaggttttctaa
aaaagaggTCAAAATTGACTTGTTCACAAATTGGTGTCAGAAGTTTCACA
AAGTTATCAACCTATTTAGCTCGCCTTCTTTTTACTTTGTCTCTTGACAA
TTACAATGCAATGTCCttaaagtgaaaaatatagTCATTGCACTGTTACA
ACCAGAAGTAACAAACTTTGGGAAACATGGGTCTTTAGGTTTGTCCAAAA
GCttgtcaaaaagtttcaagcaaCTGGTATAACGAACCAAAGCCACTTCG
TTAAACCTTTGGTAAATTGAAGAGGATACAAAGAGTGAAGTCACGTCAGC
GAAGAACAGATTGTGATGGGAGACTTGCAGACCCGGTTTGAATGGAATCC
ACGACTCATTGAAAAGTGCACTTTtgataaaaagatgaaaaaggttTTTA
GCTAGAGGTCCCTCTCAGTCATCCGAATGATCGGGTACATAATGACAGCA
TGATATAATGAATATCAATAGTTTTAccttaaaagagaaaaaaaatcgcc
AGTtaatccCAAAGGCTCAAAGATTTCCTTCCATGAGTGAAAACTGTCAA
TGAGCAGAATGGTGGTTGTAtcaaattattttatatttagACATTAGTAT
TGGTTGTGATACCATAGATGAATCTGCTGTAAAGAAATTGTTTTATAAAA
CGTaaactttatcaatgtttttgaatgattgTACGAACCATCAAGTGTTC
TAATTGACGTCAGTTTTGACAAGCCAGATTTGAcctcttttttagaaaag
cTCATAACTTTACAAAAAAGAAGCGGCATGATGGCCTAGCAACATAGCAA
TAGCCAAGGTCATGTGTTATATGATTATATAATGATTGGAAAGTGCTATG
AACTTAGTCtgcatttcaaaaacaaaaacaaaataatatttttcaatttt
tttaacttaAATGAAACTTGAAGATCTCTCATacttatcaaactaatcaa
gtttctaaaacttaaaaacacaaagacggggATAACTCTCAGACaagaat
tttatacacgatacgcatcccctatatcaaaaaatatcaaaggggatgcg
tgcagcatATAGACTAGGTTGTGTTGGTGTTTTCTGTCTGGCATATCTGT
GACTTAAtatcttcaaaaattgtcaattgTCAAAAAGTCTTCAACTTGAA
AACTGGTCTTTAAGCTTAACTCTTGCTTcgactttttggacctaccccgg
tggaggtcctataaattaacctgtgtttgttcgtccgttcgttcgtccgt
ccgttcgtctgttaccaacttttctcaggattgaatcataggaatctttt
gatttttggtacaaaggtgcaaaatggtaatggccaaaatgtgacggagc
ctgattttcgaaaaaaaaatttggggggcaaatttgggctaaaaaacggg
ttttttggactttgtgaaaaattggatcattaattttttctgattttgtg
catgaaagtagggtaccaagcagattttggcaaaaaaatattgtttgctC
AAAAAACctatgtttatctataagattcacttttaataagcatacatatt
attattttattagtttttttaaagatgaaaatgtcacggtggagggcaat
ggtttgagttttctagaaacacttattattttttttggctgaaaaacgaa
tctttatctataagaatcactattcataggcatagatcaatgttcttagc
caaattattattttcattattattttcattattttttctaaaagaagaaa
atgtcacggtagagcgcgatggtttgagttttctggaaaccttattaaAG
CTGTGCATGTTtctgatagtggattgtttttataaagaaaagcgtttaat
agcttttttatttctttttcaaaaatctttttcaatagtgttgatagttt
ctcccaatagatatgctttcattgttctttatctttttgtattttgacaa
gttatgtcttatgtgtttcattgtttcaatgtttcaatgttcattgatta
gtttgataaccaggtagctccataaaagtatcacttgttaatcAAAGACT
TCCCTAGCATTGCTTTGATAAGTTATTAGATAAATGAACTAcgcgatgaa
atgaaaaacgtGTTTCAATTCAAAACAATATTTGCAAAGGAGACAAAAGG
TTGTCAGTCACATGATGGAATTCGAATTAAATGTAAGAAGTGACAaaaaa
tttctagaaaattttattttcaatataagGTACTTAAAATCCACTAAATG
TGAGTTAAAAGAAGGTCGTCGCAGGTGCGTTCTGATGAGtaaaatgaaga
ataaaataatttgttattaaaaagaaagaaacagcAATGTGCAATTtgat
ataccgggtgacccacgaaaaagttcagacgtttcccgacgtcttgaggc
caaataaatgtcccaaagtgcttggagttttgatatttagaaagtagata
tcctaacttaaaatttgaaccatcactttttaaatttgaccaacttgttc
tctacttatgagcttttaaagtcaaaattaacttttcgaaaagtgtaaaa
aacacgtaaaaaagaggtattaaactccaagcactttgggacatttgttc
ggcctcaagacgtcgggaaacatctgaactttttcgtgggtcacccggta
gtacTTGCGGACTGAAACCCTGCAAGATGTCAATTACTCCTGGTTCTCTA
TCTTGGCTataaaattttgcatttctctTTTTCCAGCACAAATTAGGTCA
TGAAAGAGGACATGGTGCGGAGTGCTTGAAATGTGGACCAAAATGTGAGG
GGCttgatcttcatttttggaggtGAGCTATTATCTATATTgttttataa
atatttcattttgtaTTGTATTTGGTATTCTGAAATTAAAGTTGTGTTTC
TTAGTTGGTCAAAACATACGAGACTTCTTATATAACAACATCTCTGCTTC
AATTAATACATCGTTAAATTGAAGACGATAAGAATGGAGAGTATCCTACT
TTAAAATGGGATTTTGAACTAAACCTCACACAGTCAAAATACTACACTGA
GAATATTTATATTGGAACTGCTTTTACCaatgtaattttgaaaatcgtTT
TTTATCTCTTATTCaattcttctcttttttttctagaaaaatctGTAAGA
ATTGTTATTGTCGGTATGACGAACATGACGtcaaaagtgaagaagaaata
cATCATGGcattgtcaaaaatattttccgcaAAGAGAGAGGGCTCTCGGA
TGAAATCGGAAAACTACAAATCTTTGATCCAGAAAAACAACCAGCCATTG
CTGAACAAGTCAAGGCGAACTTTATTAAAGTACCTGAAGTCTCCTCACCT
TTCGCTGTAAGTACACAATATATCAATATTCATGAGATAAAACATCGAAA
ACCATGGAAAAGGGTCTGTTCAATAATTAAGTCAGAACAAACTTTTGAGC
cgtaattttcatatttttcataagaGGTGCTTTATGTGAATTTAATCGCG
AGGAATATCTTCACACTCGATATTCAACAACACttccaaaaaatgaaatg
aaatcattttcaaagtaTATTTAAAGATTCGTTGATGATGTACTGCAAAC
GATTCCAAATTGTTCATCTTAAAAGCTACGTTAAAGTTGAGTGACCAGCA
GCTTTCTTTCTTCCATCATAGATGtcgaaatatttgaaacaacTTCCAAA
AGAGAAAGATGCATTCCAAGGCGAGGCAGGTCAACAATATCGCAATCacc
aactacaacaacaactACCAGCACACGATTTCGACCCTGCCTTTTGTAAC
AAGTTGAGTGACCAAGAAAAAGACCGGATGCAGAAGTTTACGGACGTCCG
TGATGATGATGCCGGACAAGGTGCCATCAAAGAAAAAACTGCTAAAGAAA
AGACCCACTGGGTTagtactttttcaaataaacACGCTTTTTATAAATGT
AACTATAAAAATATCAGAGCGAAAATTGCCCAGAACAAAATCTGAAGGAG
AAGAATACCTGAATTTGATCGTTTTGAATTAGTTGATTAAGAGtgtattt
tttacagaaaatcatTTCTATCACATTCACCTGATAGACGGCGCCCCTTA
AGTCCTTACTGGTGGTACCCGATCAAAAAAACGTGACTTAATATACTTCT
TTCTCTCGCCCTCCCAAAACAAAGTATAGGTTTACTGGAAATAATGGCTC
TCTTATGGCTTTCTTATAGAAATGTGAAAAGTGCGGCGAAAACTTGATGA
TCGGTGAAGTCGCCATATTTGCTGAAAAAGCTGGTAAAGATAAATGTTGG
CATCCCAATTGTTTCGTTTGCGATACGTGTCAAGAACTGCTGGTGGATCT
GATCTACTTTTTCAAAGACGGAAAGATTTTTTGTGGACGCCATTATGGTG
AATTAACACGTGTTCGATGTGCTGCTTGCGATGAGGTAATTATGAATTTC
GACTCGTGCGATAATTGTTTTCCTGATTCTGCGATCCTTCCCGTTACCCT
AGTTCGATCCCATGAGTTTTTGACAGCTTTTTATCAGCAAAAAAACAATG
GCAGATGTCTAGAAGATCCAATCCTTGCCTGAATTCTATACAAGTCTTCA
ATTCTTTCAACACTATCAGGNGATGTCTAGAAGATCCAATCCTTGCCTGA
ATTCTATACAAGTCTTCAATTCTTACAAGACTACCAGACACTAATAGAGT
TTTGTCAAGGTAGTCAAAGTATCgttttgttttctttagttAATTTTCAC
GAAGGAATACACTCAAGCAGAAGATCAGAACTGGCATTTGCAGCACTTTT
GTTGTTTGAAATGTGACAAAATGTTGGGTGGTCAGAAATATGTGGCTCGT
GATGGAAAACCATATTGTATGGGTTGCTATGATACTACCTTTGCCAAAAC
TTGTCAAACTTGTAAGCAACGTATCGCCGCGGATGCGAAGAGAGTTTCAT
ATAAAGACGCTAATTGGCATGCAAGTGAAGAATGCTTCCGCTGTTTAGCA
TGCTCCGAACCCATGCTCGGTAAACAAttcatttataaaaacaaagacGT
TTACTGCTCTGGGGCATGCGCGAGAAAATAGAAGTCGTATTTAATTTCAA
TGGTGAGATTGCATACGAGTGATACTGTAAGATTCTTGACTTTCGAACGT
CCTGAAATGTCCTCTCATGTTATCTCGCCAATCTTTTCTTACTGAGTTTG
TTCTAAAAGTGCATACAATTCTCAAGGATAGCTCGATACGGTCTATTAAC
CTATTGATGGGATTGTGTACAATTTCGAACAGACTTTTGCAAAATTTATT
ATATTGAGTTTATATATTTATTGGATCAAATTATAAAATCCTTTTTACAT
TTTGGTCGCTAGTCGATTATAATCAATTTTTGTGTGTTTATATTATttgg
aatattttatttttgctatgttaCTATTGCATATCACCTCCTTAACACTT
AAcactgaaaatccttttcaagaCAACACTTGAATTAGACAAAAACTTTG
CAGTCAAAATGTCGCTCTGCAAGATAAGCCAGTCGAATATTATTTTTGTT
CGGTTCAGAATGAGTAAGAAGATATTAATGCTTAAACCTGTAAATATATT
TGATGTAGGGAATAGATTTAGATAAtcactttttttagttttgaatttta
ttttaattttcttgtACTTCATTCTCATACGGGCAGGCACTTTTATCTAC
AATTAATCAAttcaaaaaagattgaaagtttgaaatggAGTTTTATATTC
TCGATCTTTTGTCTCGTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034399XLOC_034399Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054578-exon-scaffold_243-1491911889:830990..831092TCONS_00054578-exon-scaffold_243-1491911889:830990..831092Clytia hemisphaericaexon
TCONS_00054578-exon-scaffold_243-1510915933:830990..831092TCONS_00054578-exon-scaffold_243-1510915933:830990..831092Clytia hemisphaericaexon
TCONS_00054578-exon-scaffold_243-1575043694:830990..831092TCONS_00054578-exon-scaffold_243-1575043694:830990..831092Clytia hemisphaericaexon
TCONS_00054578-exon-scaffold_243-1491911889:848426..848511TCONS_00054578-exon-scaffold_243-1491911889:848426..848511Clytia hemisphaericaexon
TCONS_00054578-exon-scaffold_243-1510915933:848426..848511TCONS_00054578-exon-scaffold_243-1510915933:848426..848511Clytia hemisphaericaexon
TCONS_00054578-exon-scaffold_243-1575043694:848426..848511TCONS_00054578-exon-scaffold_243-1575043694:848426..848511Clytia hemisphaericaexon
TCONS_00054578-exon-scaffold_243-1491911889:848826..849045TCONS_00054578-exon-scaffold_243-1491911889:848826..849045Clytia hemisphaericaexon
TCONS_00054578-exon-scaffold_243-1510915933:848826..849045TCONS_00054578-exon-scaffold_243-1510915933:848826..849045Clytia hemisphaericaexon
TCONS_00054578-exon-scaffold_243-1575043694:848826..849045TCONS_00054578-exon-scaffold_243-1575043694:848826..849045Clytia hemisphaericaexon
TCONS_00054578-exon-scaffold_243-1491911889:849361..849600TCONS_00054578-exon-scaffold_243-1491911889:849361..849600Clytia hemisphaericaexon
TCONS_00054578-exon-scaffold_243-1510915933:849361..849600TCONS_00054578-exon-scaffold_243-1510915933:849361..849600Clytia hemisphaericaexon
TCONS_00054578-exon-scaffold_243-1575043694:849361..849600TCONS_00054578-exon-scaffold_243-1575043694:849361..849600Clytia hemisphaericaexon
TCONS_00054578-exon-scaffold_243-1491911889:849909..850124TCONS_00054578-exon-scaffold_243-1491911889:849909..850124Clytia hemisphaericaexon
TCONS_00054578-exon-scaffold_243-1510915933:849909..850124TCONS_00054578-exon-scaffold_243-1510915933:849909..850124Clytia hemisphaericaexon
TCONS_00054578-exon-scaffold_243-1575043694:849909..850124TCONS_00054578-exon-scaffold_243-1575043694:849909..850124Clytia hemisphaericaexon
TCONS_00054578-exon-scaffold_243-1491911889:850429..851460TCONS_00054578-exon-scaffold_243-1491911889:850429..851460Clytia hemisphaericaexon
TCONS_00054578-exon-scaffold_243-1510915933:850429..851460TCONS_00054578-exon-scaffold_243-1510915933:850429..851460Clytia hemisphaericaexon
TCONS_00054578-exon-scaffold_243-1575043694:850429..851460TCONS_00054578-exon-scaffold_243-1575043694:850429..851460Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:830990..851460 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.74883	5.32852	1.53662	0.0518026	22.6112	17.1285	39.246	38.9718	31.3003	31.0286	17.3941	17.3058	48.8589	45.0873	39.7828	37.2586	34.2835	65.9218	69.1747	91.6012	19.8544	23.5172	23.4001	20.4497	11.1696	17.179	155.755	185.405	326.462	310.754
Blast
[Close]
BLAST of TCONS_00054578 vs. Swiss-Prot (Human)
Match: TES (Testin OS=Homo sapiens GN=TES PE=1 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 2.992e-94
Identity = 173/418 (41.39%), Postives = 235/418 (56.22%), Query Frame = 2 
Query:   95 DLQHK-----LGHERGHGAECLKCGPKCEGLDLHFWRKICKNCYCRYDEHDVKSEEEIHHGIVK--------NIFRKERGLSDEIGKLQIFDPEKQPAIAEQVKANFIK---VPEVSSPFAMSKYLKQLPKEKDAFQGEAGXXXXXXXXXXXLPAHDFDPAFCNKLSDQEKDRMQKFT-----------DV--------------------RDDDAGQGAIKEKTAKEK-THWKCEKCGENLMIGEVAIFAEKAGKDKCWHPNCFVCDTCQELLVDLIYFFKDGKIFCGRHYGELTRVRCAACDELIFTKEYTQAEDQNWHLQHFCCLKCDKMLGGQKYVARDGKPYCMGCYDTTFAKTCQTCKQRIAADAKRVSYKDANWHASEECFRCLACSEPMLGKQFIYKNKDVYCSGACARK 1204
            DL++K     LGHE+G GA CLKC  KCEG +LHFWRKIC+NC C  +EHDV    E    + K         +  K +     + K  +       A  + V  N +     P V +     +Y++ LPKEK    G  G QYR  QL +QLPAHD DP+ C++LS +E   M++F            DV                    R   A  GA+++K+A+ K T + C  C  ++  G+ AI+AE+AG DK WHP CFVC TC ELLVD+IYF+K+ K++CGRHY +  + RCA CDELIF+ EYTQAE+QNWHL+HFCC  CD +L G+ YV  + KP C  CY    A  CQ C   I  + +RV+Y + +WHAS ECF C  CS+ ++G++F+     V+CS  C ++
Sbjct:    2 DLENKVKKMGLGHEQGFGAPCLKCKEKCEGFELHFWRKICRNCKCGQEEHDVLLSNEEDRKVGKLFEDTKYTTLIAKLKSDGIPMYKRNVMILTNPVAAKKNVSINTVTYEWAPPVQNQALARQYMQMLPKEKQPVAGSEGAQYRKKQLAKQLPAHDQDPSKCHELSPREVKEMEQFVKKYKSEALGVGDVKLPCEMDAQGPKQMNIPGGDRSTPAAVGAMEDKSAEHKRTQYSCYCCKLSMKEGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYFWKNEKLYCGRHYCDSEKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKR 419
The following BLAST results are available for this feature:
BLAST of TCONS_00054578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TES2.992e-9441.39Testin OS=Homo sapiens GN=TES PE=1 SV=1[more]
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