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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054662 ID=TCONS_00054662|Name=TCONS_00054662|organism=Clytia hemisphaerica|type=transcript|length=1507bp
TCCTGTAATACACTTTTACTATATGTATGTATTCATAAAAATATGCATGA
CATGTACCTCGAATTAAAAATGCAAGAATAAAGACATTCGTTATCCATTG
AAAAACTacgaaaaattttcaacaatctAGAAATAGATTACGTTTTCGAA
TGAAATAGTTCTTGTCGTACATGATTTTATTTCATCAAAAGTACTTGTGA
CGTAATCAAATGTTGACACACAGGTAAGAGAGATTTCGAACTTTTCCATG
CGATTTCGAAAGTAGAGTTTGCAttctttacaatttttcttCATCGGGAA
AAACATTAGGTTTATTTTAAACCGAATATTCTCgaattttattcttttaa
aagagCCTAAAAGCCGGTATCTACAGGAAATGATCGACTAAGTTTCCAAA
CAAAGAATTTATTCATGAGAATGAGAACACGGGGGTTTCAAACATGAAAG
AAAACGTGCTGAAAGTTTTAACAAATGCACAGAAAAGCAAGAGGCAATCA
TTTTATCACATTTTCTTTATGTTTAGAGAAACCAAAAATGCTTcgaagaa
atcaaaacaaaaatcttcaggttttttctaaaaaaaactctactctattt
ttttttgtaagaacgtCACTTCCCAATAGAGGGAAAACGAAAAAGAGTAA
AATATATAGCAATGAATGCAAGTAAATGTAAGTAGAGTGCgaaatttctt
atgaaaaagaaaaactcttTTTATTCATTATTAATGAATGCCACTTTCTC
TTTGTTTAGTAAGAAACAATACCAACTGATGATAGTCAAAGCACGAAGAA
GCCTTTAAAAAGGGGATCAGTACCCAATGGAAAGTCAGTCAAGTGAACAC
CTTCAAAGAGCAAGGACAGAACAACAGATATCTTCAATGATGCTCAATAC
AAAAGAAACGAATAAATTCGATATGGAACTAAGCACACATGAAGAAATTC
GTACGATCAGTACACAGATTAAAGCACAGTTGGAATACAAGTATcgaaaa
acaacaaagaaattCAAGATACACAAAGGAAAGAAATATCAGACGCTTAT
AGAAGATGATTCAGAAGATACGGATACTTTTTACGAAGCAATGACTGAAT
ATAATTTACAAGAATCACCTCTATTGATATCAAAAGAAAGTATCATAAAA
GCACAACTCGCTAAAAAGTATAGTGACCAAGAGAACAAGAGACGCTGTCG
AAAGAATGGCGTGTTTGAAGTCCCGACTGAAAGAAAACGTAAGCATGGGA
TTTCAGAACGGGACGAGTTGGAAAGACTAAGCGTGCATCGTATATTGCag
gaatatctttttaatgaaAGCGTGAAGGAAATCTTTTTATCGTAAAAATC
TTAATATTATCACTTTTGTAAATATATTCTttcatatattttattttttg
aacttATTCTTTTTAACGACATGTACATTTGACTTATGTGTATAACAGGA
TGTAAATATGACTCAACTCTTGTATATAACTTTATCGGGtcaaaagatgt
aaaaaaa Run BLAST on NCBI transcript from alignment at scaffold_243:877592..879439- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054662 ID=TCONS_00054662|Name=TCONS_00054662|organism=Clytia hemisphaerica|type=transcript|length=1848bp|location=Sequence derived from alignment at scaffold_243:877592..879439- (Clytia hemisphaerica)
TCCTGTAATACACTTTTACTATATGTATGTATTCATAAAAATATGCATGA
CATGTACCTCGAATTAAAAATGCAAGAATAAAGACATTCGTTATCCATTG
AAAAACTACGAAAAATTTTCAACAATCTAGAAATAGATTACGTTTTCGAA
TGAAATAGTTCTTGTCGTACATGATTTTATTTCATCAAAAGTACTTGTGA
CGTAATCAAATGTTGACACACAGGTAAGAGAGATTTCGAACTTTTCCATG
CGATTTCGAAAGTAGAGTTTGCATTCTTTACAATTTTTCTTCATCGGGAA
AAACATTAGGTTTATTTTAAACCGAATATTCTCGAATTTTATTCTTTTAA
AAGAGCCTAAAAGCCGGTATCTACAGGAAATGATCGACTAAGTTTCCAAA
CAAAGAATTTATTCATGAGAATGAGAACACGGGGGTTTCAAACATGAAAG
AAAACGTGCTGAAAGTTTTAACAAATGCACAGAAAAGCAAGAGGCAATCA
TTTTATCACATTTTCTTTATGTTTAGAGAAACCAAAAATGCTTCGAAGAA
ATCAAAACAAAAATCTTCAGGTTTTTTCTAAAAAAAACTCTACTCTATTT
TTTTTTGTAAGAACGTCACTTCCCAATAGAGGGAAAACGAAAAAGAGTAA
AATATATAGCAATGAATGCAAGTAAATGTAAGTAGAGTGCGAAATTTCTT
ATGAAAAAGAAAAACTCTTTTTATTCATTATTAATGAATGCCACTTTCTC
TTTGTTTAGTAAGAAACAATACCAACTGATGATAGTCAAAGCACGAAGAA
GCCTTTAAAAAGGGGATCAGTACCCAATGGAAAGTCAGTCAAGTGAACAC
CTTCAAAGAGCAAGGACAGAACAACAGATATCTTCAATGATGCTCAATAC
AAAAGAAACGAATAAATTCGATATGGAACTAAGGTAAGAATAAAAATGAT
TACTTTGATTATTGTGCCGTTACAGCAAATTCGAAATTCACAATAACATT
GAAGGATAAACCTGCTTAGGCTTTTCCATTGCTACAAAGAAAGACTTTGT
GAATCCTAAGGACACTTTGTAATGAAAAATAGGATAAGAAAACACATACC
TAGTAGGGACGTGAAAACTGCGTTGGACAATATTTGTGACGAACGATCTG
AATCAAAACAAAAACAAAAAGATTAACAGGGGGCGGCTCAGAGTCGACTA
AACCGGTATTATAGGTTTAAAGGGGGCATATGGTACATGTTGTTTTTCAT
TCTTTTCTCTGATTTTCGTTACAGCACACATGAAGAAATTCGTACGATCA
GTACACAGATTAAAGCACAGTTGGAATACAAGTATCGAAAAACAACAAAG
AAATTCAAGATACACAAAGGAAAGAAATATCAGACGCTTATAGAAGATGA
TTCAGAAGATACGGATACTTTTTACGAAGCAATGACTGAATATAATTTAC
AAGAATCACCTCTATTGATATCAAAAGAAAGTATCATAAAAGCACAACTC
GCTAAAAAGTATAGTGACCAAGAGAACAAGAGACGCTGTCGAAAGAATGG
CGTGTTTGAAGTCCCGACTGAAAGAAAACGTAAGCATGGGATTTCAGAAC
GGGACGAGTTGGAAAGACTAAGCGTGCATCGTATATTGCAGGAATATCTT
TTTAATGAAAGCGTGAAGGAAATCTTTTTATCGTAAAAATCTTAATATTA
TCACTTTTGTAAATATATTCTTTCATATATTTTATTTTTTGAACTTATTC
TTTTTAACGACATGTACATTTGACTTATGTGTATAACAGGATGTAAATAT
GACTCAACTCTTGTATATAACTTTATCGGGTCAAAAGATGTAAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054662-exon-scaffold_243-1575043694:878507..879439 | TCONS_00054662-exon-scaffold_243-1575043694:878507..879439 | Clytia hemisphaerica | exon |
| TCONS_00054662-exon-scaffold_243-1575043694:877592..878165 | TCONS_00054662-exon-scaffold_243-1575043694:877592..878165 | Clytia hemisphaerica | exon |
| TCONS_00054662-exon-scaffold_243-1510915933:878507..879439 | TCONS_00054662-exon-scaffold_243-1510915933:878507..879439 | Clytia hemisphaerica | exon |
| TCONS_00054662-exon-scaffold_243-1510915933:877592..878165 | TCONS_00054662-exon-scaffold_243-1510915933:877592..878165 | Clytia hemisphaerica | exon |
| TCONS_00054662-exon-scaffold_243-1491911889:878507..879439 | TCONS_00054662-exon-scaffold_243-1491911889:878507..879439 | Clytia hemisphaerica | exon |
| TCONS_00054662-exon-scaffold_243-1491911889:877592..878165 | TCONS_00054662-exon-scaffold_243-1491911889:877592..878165 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:877592..879439 - |
Blast
The following BLAST results are available for this feature:
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