|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054669 ID=TCONS_00054669|Name=TCONS_00054669|organism=Clytia hemisphaerica|type=transcript|length=704bp
AATGCAGAAAGCAGAAGGAtgcttaggcaaaaatagTTTGTATTTTACAA
AGTTATCCGTTATGGATATACTCTCGCCCAACTATTTGTTTAGTTCGTGG
AGGACATATCGCTCCATCCCAATCAGACTTCGAATTGACGAAAGGGGAAG
ATGTCATTATCAAAGTGAACTTGTATCCTTATATCGATGAACATAGTGAT
TGGGTAAGTGTATACTATGCAGATCATGAAAATTCTTCAATAGACGCCAT
CTGGAATGATGATACTGGTGTAACGGAGCACGGAATCAACAAGTTTGGTC
AGCGTTTCATGGTTACATACACCAAAGATAAAAGTGTGGAGGTGGAGATC
AAAGAAATATCACGGTCAATGGTTCTCTACGTCTCAACTGTCTTCCTCAA
CGCAAAAGGTCAAATCAAAAATGGTCCACTCTATTCTACATTTAGAATCA
CACTTAGGAAAGCAGCCGGATACAAGCAAGTGACAACCAGTCCAGTTTGT
TACAAAGGAAAAGGTAGTTCACCTGGTTTCTTTACGATCAAAGATGCAGG
CTCTATCGCCTTTGTCAAATTGCAACATGTCTCTGGGTACATTGCTTGTG
GTGAAAGACTCGTAAGTCGTTGGGCTTGTGGATGCTGTTATAAAGAGAAC
ACTGTGCTAACACTTATAACAGATTCACAAGATAGACCATTATTCCCTGA
Ttct Run BLAST on NCBI transcript from alignment at scaffold_243:952567..954121- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054669 ID=TCONS_00054669|Name=TCONS_00054669|organism=Clytia hemisphaerica|type=transcript|length=1555bp|location=Sequence derived from alignment at scaffold_243:952567..954121- (Clytia hemisphaerica)
AATGCAGAAAGCAGAAGGATGCTTAGGCAAAAATAGGTACGTTGATGATT
GTGACAAATTCTTTTTTATATCCCTTTCTGTGAGTTGACTGAATCTAGGT
ATGTAAGTTAGGGGATTTCGCATTTCATGAAATAAGATCCTTATTTGTTG
TAATTGGAAACGATATCGATGGCTTGATTGTTTTGATTTCTACGGAAACA
TCAATAATGCTTAAAATGCATTTTAACGTCGGTAGAGTCTGCACCACTAA
CACAACTTTCAACAAACGAGAAAGTGAAAGATGAATTCTGTTAGATTGTT
ATCTTTGCTTTCTTTGCTTGCTCAAAGTTTATGCTCAGGTAAATCTTTTA
ATCATTCAAAGACCTGAAATTTCCTGACACTCTTGTTTACTTATTCATAC
CTTCCAGAAATCATAGCAACGCCTGGATTGTAATTGTTATTGGCAGATTT
TCTGATATTTATTCCATTTTTATATCCAAACTGGACAGTATACCTCTAAC
TCCTTTGAACTTTAATCTTTCTCTCTTTGTAGTTTGTATTTTACAAAGTT
ATCCGTTATGGATATACTCTCGCCCAACTATTTGTTTAGTTCGTGGAGGA
CATATCGCTCCATCCCAATCAGACTTCGAATTGACGAAAGGGGAAGATGT
CATTATCAAAGTGAACTTGTATCCTTATATCGATGAACATAGTGATTGGG
TAAGTGTATACTATGCAGATCATGAAAATTCTTCAATAGACGCCATCTGG
AATGATGATACTGGTGTAACGGAGCACGGAATCAACAAGTTTGGTCAGCG
TTTCATGGTTACATACACCAAAGATAAAAGTGTGGAGGTGGAGATCAAAG
AAATATCACGGTCAATGGTTCTCTACGTCTCAACTGTCTTCCTCAACGCA
AAAGGTCAAATCAAAAATGGTCCACTCTATTCTACATTTAGAATCACACT
TAGGAAAGGTACGAGTTTTTATCAGTTTTGTTGACTCCTACAACCCTATA
TCGAACCTTTGATGGTACTCTCCAAAACTTTTCTGCGTGAGCAATAAACT
GAAATATACTGGTTGACTGTCATTGCGCATTAAAATTACGATTGTCCACC
GGTATATCTTTCAATTTTCTAAAAAACGGCCAAAATAAACCTTCTTTACT
GTACGGCTGTAACTTTTTATTTAAAAAATATGCGAGAAAACTGTGCTCGC
ATACTTTCGTGGCTGACTGCAGTCACAGTAAAGAGATTTCAATTCTCAAT
TATGATAGCTTCTCCTGACAAAACTATTCCCTTTTGAAATTCTTTATCAC
TTTATTTTTCTAGCAGCCGGATACAAGCAAGTGACAACCAGTCCAGTTTG
TTACAAAGGAAAAGGTAGTTCACCTGGTTTCTTTACGATCAAAGATGCAG
GCTCTATCGCCTTTGTCAAATTGCAACATGTCTCTGGGTACATTGCTTGT
GGTGAAAGACTCGTAAGTCGTTGGGCTTGTGGATGCTGTTATAAAGAGAA
CACTGTGCTAACACTTATAACAGATTCACAAGATAGACCATTATTCCCTG
ATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054669-exon-scaffold_243-1575043694:954086..954121 | TCONS_00054669-exon-scaffold_243-1575043694:954086..954121 | Clytia hemisphaerica | exon |
| TCONS_00054669-exon-scaffold_243-1575043694:953164..953589 | TCONS_00054669-exon-scaffold_243-1575043694:953164..953589 | Clytia hemisphaerica | exon |
| TCONS_00054669-exon-scaffold_243-1575043694:952567..952808 | TCONS_00054669-exon-scaffold_243-1575043694:952567..952808 | Clytia hemisphaerica | exon |
| TCONS_00054669-exon-scaffold_243-1510915933:954086..954121 | TCONS_00054669-exon-scaffold_243-1510915933:954086..954121 | Clytia hemisphaerica | exon |
| TCONS_00054669-exon-scaffold_243-1510915933:953164..953589 | TCONS_00054669-exon-scaffold_243-1510915933:953164..953589 | Clytia hemisphaerica | exon |
| TCONS_00054669-exon-scaffold_243-1510915933:952567..952808 | TCONS_00054669-exon-scaffold_243-1510915933:952567..952808 | Clytia hemisphaerica | exon |
| TCONS_00054669-exon-scaffold_243-1491911889:954086..954121 | TCONS_00054669-exon-scaffold_243-1491911889:954086..954121 | Clytia hemisphaerica | exon |
| TCONS_00054669-exon-scaffold_243-1491911889:953164..953589 | TCONS_00054669-exon-scaffold_243-1491911889:953164..953589 | Clytia hemisphaerica | exon |
| TCONS_00054669-exon-scaffold_243-1491911889:952567..952808 | TCONS_00054669-exon-scaffold_243-1491911889:952567..952808 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:952567..954121 - |
Blast
The following BLAST results are available for this feature:
|
