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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054670 ID=TCONS_00054670|Name=TCONS_00054670|organism=Clytia hemisphaerica|type=transcript|length=726bp
TTTGGCTTCTACATACGAAAAATGGAATGCAGAAAGCAGAAGGAtgctta
ggcaaaaatagTTTGTATTTTACAAAGTTATCCGTTATGGATATACTCTC
GCCCAACTATTTGTTTAGTTCGTGGAGGACATATCGCTCCATCCCAATCA
GACTTCGAATTGACGAAAGGGGAAGATGTCATTATCAAAGTGAACTTGTA
TCCTTATATCGATGAACATAGTGATTGGGTAAGTGTATACTATGCAGATC
ATGAAAATTCTTCAATAGACGCCATCTGGAATGATGATACTGGTGTAACG
GAGCACGGAATCAACAAGTTTGGTCAGCGTTTCATGGTTACATACACCAA
AGATAAAAGTGTGGAGGTGGAGATCAAAGAAATATCACGGTCAATGGTTC
TCTACGTCTCAACTGTCTTCCTCAACGCAAAAGGTCAAATCAAAAATGGT
CCACTCTATTCTACATTTAGAATCACACTTAGGAAAGCCGGATACAAGCA
AGTGACAACCAGTCCAGTTTGTTACAAAGGAAAAGGTAGTTCACCTGGTT
TCTTTACGATCAAAGATGCAGGCTCTATCGCCTTTGTCAAATTGCAACAT
GTCTCTGGGTACATTGCTTGTGGTGAAAGACTCGTAAGTCGTTGGGCTTG
TGGATGCTGTTATAAAGAGAACACTGTGCTAACACTTATAACAGATTCAC
AAGATAGACCATTATTCCCTGATtct Run BLAST on NCBI transcript from alignment at scaffold_243:952567..954146- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054670 ID=TCONS_00054670|Name=TCONS_00054670|organism=Clytia hemisphaerica|type=transcript|length=1580bp|location=Sequence derived from alignment at scaffold_243:952567..954146- (Clytia hemisphaerica)
TTTGGCTTCTACATACGAAAAATGGAATGCAGAAAGCAGAAGGATGCTTA
GGCAAAAATAGGTACGTTGATGATTGTGACAAATTCTTTTTTATATCCCT
TTCTGTGAGTTGACTGAATCTAGGTATGTAAGTTAGGGGATTTCGCATTT
CATGAAATAAGATCCTTATTTGTTGTAATTGGAAACGATATCGATGGCTT
GATTGTTTTGATTTCTACGGAAACATCAATAATGCTTAAAATGCATTTTA
ACGTCGGTAGAGTCTGCACCACTAACACAACTTTCAACAAACGAGAAAGT
GAAAGATGAATTCTGTTAGATTGTTATCTTTGCTTTCTTTGCTTGCTCAA
AGTTTATGCTCAGGTAAATCTTTTAATCATTCAAAGACCTGAAATTTCCT
GACACTCTTGTTTACTTATTCATACCTTCCAGAAATCATAGCAACGCCTG
GATTGTAATTGTTATTGGCAGATTTTCTGATATTTATTCCATTTTTATAT
CCAAACTGGACAGTATACCTCTAACTCCTTTGAACTTTAATCTTTCTCTC
TTTGTAGTTTGTATTTTACAAAGTTATCCGTTATGGATATACTCTCGCCC
AACTATTTGTTTAGTTCGTGGAGGACATATCGCTCCATCCCAATCAGACT
TCGAATTGACGAAAGGGGAAGATGTCATTATCAAAGTGAACTTGTATCCT
TATATCGATGAACATAGTGATTGGGTAAGTGTATACTATGCAGATCATGA
AAATTCTTCAATAGACGCCATCTGGAATGATGATACTGGTGTAACGGAGC
ACGGAATCAACAAGTTTGGTCAGCGTTTCATGGTTACATACACCAAAGAT
AAAAGTGTGGAGGTGGAGATCAAAGAAATATCACGGTCAATGGTTCTCTA
CGTCTCAACTGTCTTCCTCAACGCAAAAGGTCAAATCAAAAATGGTCCAC
TCTATTCTACATTTAGAATCACACTTAGGAAAGGTACGAGTTTTTATCAG
TTTTGTTGACTCCTACAACCCTATATCGAACCTTTGATGGTACTCTCCAA
AACTTTTCTGCGTGAGCAATAAACTGAAATATACTGGTTGACTGTCATTG
CGCATTAAAATTACGATTGTCCACCGGTATATCTTTCAATTTTCTAAAAA
ACGGCCAAAATAAACCTTCTTTACTGTACGGCTGTAACTTTTTATTTAAA
AAATATGCGAGAAAACTGTGCTCGCATACTTTCGTGGCTGACTGCAGTCA
CAGTAAAGAGATTTCAATTCTCAATTATGATAGCTTCTCCTGACAAAACT
ATTCCCTTTTGAAATTCTTTATCACTTTATTTTTCTAGCAGCCGGATACA
AGCAAGTGACAACCAGTCCAGTTTGTTACAAAGGAAAAGGTAGTTCACCT
GGTTTCTTTACGATCAAAGATGCAGGCTCTATCGCCTTTGTCAAATTGCA
ACATGTCTCTGGGTACATTGCTTGTGGTGAAAGACTCGTAAGTCGTTGGG
CTTGTGGATGCTGTTATAAAGAGAACACTGTGCTAACACTTATAACAGAT
TCACAAGATAGACCATTATTCCCTGATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054670-exon-scaffold_243-1575043694:954086..954146 | TCONS_00054670-exon-scaffold_243-1575043694:954086..954146 | Clytia hemisphaerica | exon |
| TCONS_00054670-exon-scaffold_243-1575043694:953164..953589 | TCONS_00054670-exon-scaffold_243-1575043694:953164..953589 | Clytia hemisphaerica | exon |
| TCONS_00054670-exon-scaffold_243-1575043694:952567..952805 | TCONS_00054670-exon-scaffold_243-1575043694:952567..952805 | Clytia hemisphaerica | exon |
| TCONS_00054670-exon-scaffold_243-1510915933:954086..954146 | TCONS_00054670-exon-scaffold_243-1510915933:954086..954146 | Clytia hemisphaerica | exon |
| TCONS_00054670-exon-scaffold_243-1510915933:953164..953589 | TCONS_00054670-exon-scaffold_243-1510915933:953164..953589 | Clytia hemisphaerica | exon |
| TCONS_00054670-exon-scaffold_243-1510915933:952567..952805 | TCONS_00054670-exon-scaffold_243-1510915933:952567..952805 | Clytia hemisphaerica | exon |
| TCONS_00054670-exon-scaffold_243-1491911889:954086..954146 | TCONS_00054670-exon-scaffold_243-1491911889:954086..954146 | Clytia hemisphaerica | exon |
| TCONS_00054670-exon-scaffold_243-1491911889:953164..953589 | TCONS_00054670-exon-scaffold_243-1491911889:953164..953589 | Clytia hemisphaerica | exon |
| TCONS_00054670-exon-scaffold_243-1491911889:952567..952805 | TCONS_00054670-exon-scaffold_243-1491911889:952567..952805 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:952567..954146 - |
Blast
The following BLAST results are available for this feature:
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