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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054728 ID=TCONS_00054728|Name=TCONS_00054728|organism=Clytia hemisphaerica|type=transcript|length=2032bp
CACggctaaaaaagtgagtttctCGGAGTTTGGAGAATTCAGGATAATCG
ATGGAAAGCGGAGTTAAACGGCGTTTTACGGACATAGAGTTTCCTAATTT
CGGTAAACTCCGTCAAAATAATCGTAAATTTTCATCGTAATTTTCCTCAG
TTTGCATGCGTGTCTAAAAGTTGGTTTTATGCAAGTGTGTGTCGTGAAAC
TTCGGAAAaccaattttcgattttcataaCATCGggagatgaaaaaaata
gtttacGGAGTTTTCCTGATCAAATTTTATCCGATCGGGATATTGGAATA
AAGACGGATTTTAGTTCCCATTCTTCTGAAAACGCGGTtcattcattgaa
attgtttggCGCCAGAGTTCATTCAAAATGGTGTTTTCAAGAGGGGAAGT
TACAAAAAGTCTACGAAACCAACAACCAGATCTTAGCTCGCAGATTATTT
CTTTGGACTATCCTCGCCACTGAGAACGTATCAACTTCCAAAGCATACAT
CAAAAACCAAATGGACAATAAAGATAAGTATTTTCGTTAGCATATTTATT
TTGATCGATAATTTCACTTTGTAGTGTAATaaccagaaaaaagtttttta
ttagtACGTTGTAATCCAGTCATACATATTTAgcatcaacaaatttatac
aaGCACACTTGTTTGATTTGACGTTTTAAGACGGGCGAAATCTTCTAAAG
AACTACCCTTTTGGAGGGTCGGTTCGGTGCTAGTATTTTTctgtcttttt
gaaaatgagagtTTTTTATTGCCAAGTTTTCCAGTCATCCAGTCATACat
attttgtattaaaaatatATGTAAGCACACTTGTTTGATTTGACGTTTTA
AGACGGGCAAAATCTTCTAAAGAACTACCCTTTTGGAGGGTCGGTTCGGT
GCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttgtattaaaaaa
tatatgtaaGCACACTTGTTTGATTTGACGTTTTAAGACGGGCGAAATCT
TAAGTACTATACTACTCTTTAGGATACGAGACTTCTTCTACATATTTGAA
AGTTCTGTTGCGTAGACTGAATTTATATCTGATTTTCTTTCAGATTGATG
ACATCACTTTACATCAATACACGTAATTGACATATTTGTTGAcaaatcaa
aaacaattcaTCACATTTCACGCCTTCATGTCCCAAAGGTAAAcaatata
aaattaaatataaaaacCAAGTAATTGTTTTAATTGAATCAAGTAATTgc
gaaaaaaagaattatttaatatcatatttttttaaagtttaatttttacG
TCTAAGTAAAAGTCGATCATCTATGCATAAATCTGTTTGCTTAAAACAAT
ACACAAATCCCTTAAAAATACAGGCAATTCATTTCAGTTCTTTATCAACA
TTTTGCCACGCAAACTTTCGGGTTGTTAAAATCTAATTTATAAAAGAAAC
GAAACAATCAAGTGACGTAACATGATGATTGGTCTGAATAACTGCAATGT
TTTTGCAAGCTCTAGCATTTTTGaagcagcgattcagacctcGATAACAA
TGAAataatgtcaatctggctttacaaataaaatttcaatcccCGTTTTT
ACCATTGTAAATACGTAAAGTGCAAGTAAACTTTTTCAGGTCTTTACGAA
AATTCGGTTtataattacacccctgtctcagtgacttgTTAAGATTTTGT
GACCGGTGGGGATCAGTCTTCTTGTTCTAGTAATTTCCTTACTTTAACTA
ACAATATCCTTTAAAATTTATCTTATTTATGAACAATATTAATTTTTGTG
ACTAAGTGAtgtaattaacaattttatattTAGTATTTATTATATACAAT
TAATTGACTAACTTAAAACTATTTAGTATATACACAATATTCATGTACca
aacatttatttattttttcaactaataagattaatgacattttagaataa
gagaaaatttaaaaatctatttcaTTTATCTACATTTTCATTTCTCAATC
CAGTTCCCAAATGCAATCATTTGGATTGAAAC Run BLAST on NCBI transcript from alignment at scaffold_244:2000..4179- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054728 ID=TCONS_00054728|Name=TCONS_00054728|organism=Clytia hemisphaerica|type=transcript|length=2180bp|location=Sequence derived from alignment at scaffold_244:2000..4179- (Clytia hemisphaerica)
CACGGCTAAAAAAGTGAGTTTCTCGGAGTTTGGAGAATTCAGGATAATCG
ATGGAAAGCGGAGTTAAACGGCGTTTTACGGACATAGAGTTTCCTAATTT
CGGTAAACTCCGTCAAAATAATCGTAAATTTTCATCGTAATTTTCCTCAG
TTTGCATGCGTGTCTAAAAGTTGGTTTTATGCAAGTGTGTGTCGTGAAAC
TTCGGAAAACCAATTTTCGATTTTCATAACATCGGGAGATGAAAAAAATA
GTTTACGGAGTTTTCCTGATCAAATTTTATCCGATCGGGATATTGGAATA
AAGACGGATTTTAGTTCCCATTCTTCTGAAAACGCGGTTCATTCATTGAA
ATTGTTTGGCGCCAGAGTTCATTCAAAATGGTGTTTTCAAGAGGGGAAGT
TACAAAAAGTCTACGAAACCAACAACCAGGTAAATTTTCTTGTTAATTTC
TAATTGTGAAATAAAGGAAATTTTCTATTCTTTCAATTGACCAATTTGCT
TTTTCAATTGAAAAGTCTTTTAAGTTATAATTTTAACTAGGAAATATTCA
AGACTGACAAAGTTTTCTCTATCTTAGATCTTAGCTCGCAGATTATTTCT
TTGGACTATCCTCGCCACTGAGAACGTATCAACTTCCAAAGCATACATCA
AAAACCAAATGGACAATAAAGATAAGTATTTTCGTTAGCATATTTATTTT
GATCGATAATTTCACTTTGTAGTGTAATAACCAGAAAAAAGTTTTTTATT
AGTACGTTGTAATCCAGTCATACATATTTAGCATCAACAAATTTATACAA
GCACACTTGTTTGATTTGACGTTTTAAGACGGGCGAAATCTTCTAAAGAA
CTACCCTTTTGGAGGGTCGGTTCGGTGCTAGTATTTTTCTGTCTTTTTGA
AAATGAGAGTTTTTTATTGCCAAGTTTTCCAGTCATCCAGTCATACATAT
TTTGTATTAAAAATATATGTAAGCACACTTGTTTGATTTGACGTTTTAAG
ACGGGCAAAATCTTCTAAAGAACTACCCTTTTGGAGGGTCGGTTCGGTGC
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGTATTAAAAAATA
TATGTAAGCACACTTGTTTGATTTGACGTTTTAAGACGGGCGAAATCTTA
AGTACTATACTACTCTTTAGGATACGAGACTTCTTCTACATATTTGAAAG
TTCTGTTGCGTAGACTGAATTTATATCTGATTTTCTTTCAGATTGATGAC
ATCACTTTACATCAATACACGTAATTGACATATTTGTTGACAAATCAAAA
ACAATTCATCACATTTCACGCCTTCATGTCCCAAAGGTAAACAATATAAA
ATTAAATATAAAAACCAAGTAATTGTTTTAATTGAATCAAGTAATTGCGA
AAAAAAGAATTATTTAATATCATATTTTTTTAAAGTTTAATTTTTACGTC
TAAGTAAAAGTCGATCATCTATGCATAAATCTGTTTGCTTAAAACAATAC
ACAAATCCCTTAAAAATACAGGCAATTCATTTCAGTTCTTTATCAACATT
TTGCCACGCAAACTTTCGGGTTGTTAAAATCTAATTTATAAAAGAAACGA
AACAATCAAGTGACGTAACATGATGATTGGTCTGAATAACTGCAATGTTT
TTGCAAGCTCTAGCATTTTTGAAGCAGCGATTCAGACCTCGATAACAATG
AAATAATGTCAATCTGGCTTTACAAATAAAATTTCAATCCCCGTTTTTAC
CATTGTAAATACGTAAAGTGCAAGTAAACTTTTTCAGGTCTTTACGAAAA
TTCGGTTTATAATTACACCCCTGTCTCAGTGACTTGTTAAGATTTTGTGA
CCGGTGGGGATCAGTCTTCTTGTTCTAGTAATTTCCTTACTTTAACTAAC
AATATCCTTTAAAATTTATCTTATTTATGAACAATATTAATTTTTGTGAC
TAAGTGATGTAATTAACAATTTTATATTTAGTATTTATTATATACAATTA
ATTGACTAACTTAAAACTATTTAGTATATACACAATATTCATGTACCAAA
CATTTATTTATTTTTTCAACTAATAAGATTAATGACATTTTAGAATAAGA
GAAAATTTAAAAATCTATTTCATTTATCTACATTTTCATTTCTCAATCCA
GTTCCCAAATGCAATCATTTGGATTGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054728-exon-scaffold_244-1575043694:3751..4179 | TCONS_00054728-exon-scaffold_244-1575043694:3751..4179 | Clytia hemisphaerica | exon |
| TCONS_00054728-exon-scaffold_244-1575043694:2000..3602 | TCONS_00054728-exon-scaffold_244-1575043694:2000..3602 | Clytia hemisphaerica | exon |
| TCONS_00054728-exon-scaffold_244-1510915933:3751..4179 | TCONS_00054728-exon-scaffold_244-1510915933:3751..4179 | Clytia hemisphaerica | exon |
| TCONS_00054728-exon-scaffold_244-1510915933:2000..3602 | TCONS_00054728-exon-scaffold_244-1510915933:2000..3602 | Clytia hemisphaerica | exon |
| TCONS_00054728-exon-scaffold_244-1491911889:3751..4179 | TCONS_00054728-exon-scaffold_244-1491911889:3751..4179 | Clytia hemisphaerica | exon |
| TCONS_00054728-exon-scaffold_244-1491911889:2000..3602 | TCONS_00054728-exon-scaffold_244-1491911889:2000..3602 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_244 | supercontig | scaffold_244:2000..4179 - |
Blast
The following BLAST results are available for this feature:
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