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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054726 ID=TCONS_00054726|Name=TCONS_00054726|organism=Clytia hemisphaerica|type=transcript|length=720bp
CATGATATCAGTGACGATTCGTTAATTGGATACGCCTTTGAAGATCACGA
TGCCGCCCATCAACACCAGATTGGTTTCGTGAACGCTGGTGTTTCAGTGT
TAAACACAGCAAGTCATATTCTTCTGAACAAACGAATCAAGAAGCTTGAA
AATCATTGGGATAGACGAATCAGGGAGCTGACAAGAGCAAATACCAATTT
CAAACGTTGTTTCGTGACGTCCGGATTAACCTTCTTCTTCTTATCACTTT
TGACGGGATTCTTCTTGTGGCAACTACTGACACCCGGAACAGCATACCGG
TACTGGAAATGCCGGGATGGTTCTATACCGGATCATCAAGCAACATTTAA
ATATAATCCTGACCGATTCTCTTTTTCGCTTGAAGATGTGAATGGGATCG
AATTTGATTTCAAGAAGCTGATGAAGAAGACAGAACATTCACAATACTCA
ATGATGGATTCTAAAGCATACCCTGGCGTTCGTTATTACCTGAATGTAGA
CGTTTGTGCGTACGGCGGGACGCGTTCGACACAAGATATAACAACAGGTC
AGAAAGTGGTATATGGCCCTGATGTATTCGCAGTTGACAAAGATTGCAAA
GAAGCTTTTTATTTTGTCGAGTGGGAATTTAAATGGCGACAAATTTATTA
GTCCAGATTTGTCAATTTCACGCATACCATTCACAACCCGTTGAATTTGA
CCTGTGTTTCTTAACTTTAT Run BLAST on NCBI protein sequence of TCONS_00054726-protein >TCONS_00054726-protein ID=TCONS_00054726-protein|Name=TCONS_00054726-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
HDISDDSLIGYAFEDHDAAHQHQIGFVNAGVSVLNTASHILLNKRIKKLE
NHWDRRIRELTRANTNFKRCFVTSGLTFFFLSLLTGFFLWQLLTPGTAYR
YWKCRDGSIPDHQATFKYNPDRFSFSLEDVNGIEFDFKKLMKKTEHSQYS
MMDSKAYPGVRYYLNVDVCAYGGTRSTQDITTGQKVVYGPDVFAVDKDCK
EAFYFVEWEFKWRQIY Run BLAST on NCBI transcript from alignment at scaffold_244:165613..169988+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054726 ID=TCONS_00054726|Name=TCONS_00054726|organism=Clytia hemisphaerica|type=transcript|length=4376bp|location=Sequence derived from alignment at scaffold_244:165613..169988+ (Clytia hemisphaerica)
CATGATATCAGTGACGATTCGTTAATTGGATACGCCTTTGAAGATCACGA
TGCCGCCCATCAACACCAGGTACCAAACGCCCCTGTTTTACTACCTCTCC
CTCGTCGCTGCCCTAACTCTCACCTTTTTCGGTCTGTTTGAATAAAGTAA
TACATTCCAGTATGGATATAAAATCTTTTGCTGTCAGATTCAAAAAGGTC
AGCTTGATGGCTCATTGGCCAATATATCCAATTTCATCTCCAATACGCGT
ACCCCGACTGGAGCATTTTAGCACATTGCTTAAAACATAATTGGGAATAT
TCTGGAGCAACAAACACCCTGAGAAAAGCTAACTAATATATTTGATATTA
TTAGAACTGCTTTCCTGCAGGCGACCGGATAGTGCAAANCTGAGAAAAGC
TAACTAATATATTTGATATTATTAGAACTGCTTTTCTGCAGGCGACCGGA
TAGTGCAAGGGTAGAGTAGCCGGCTACGGTGCACAAGGTTGTGTGTTCTA
TCCCACGCCGGGTCATATTTCATACAAAGATATGCTTtatctctgcttga
tgctcagcataAGTGGACCAATCCAGAGTGAAGTAATGGCGCCTTCGGGT
GGGTAGCtattgaaagaggagccttcgggtccaCTCCGACTACCGTTGCA
GACTTACTTAGTTTTAAGCAAACAAATGATTCCTTTCAATTCAGATTGGT
TTCGTGAACGCTGGTGTTTCAGTGTTAAACACAGCAAGTCATATTCTTCT
GAACAAACGAATCAAGAAGCTTGAAAATCATTGGGATAGACGAATCAGGG
AGCTGACAAGAGCAAATACCAATTTCAAACGTTGTGagttttctttagaa
aaagtaataaaactgtttttattacatgttaacgaccaaccaaatcaaat
aagagcttgcaaaaactccagcttgtccctgcTATTCTGCGACGGTGACG
GTTAGCATCTGATTTGCTGAGGACGacagtaaatcagcacttttttaCTG
TCcttgatattttttttgggTCAAAACTGTGGGCTATTCCAAATTGCTTC
AGTCACTCCGCCTTCTTAAAAAGTGCTTACtaatgttttgttataagaga
TTTTTCGTCACCGTGTCCCGACTTGTTTTCTTTTCAGGTAAGCTTTGTTT
GCTATGATATAGAGTACGAAGCTTGGGCTCATTGGGGAAGTAAACTTTCA
AATACCTTATTGGTAATAATAACGACGACAATAATTCGTCGGTAAAAATT
TACGTCAGCAAGGCGATTTTTTCTTCACTATTGCGAACGATTTCTTTACT
GATATTGTACTTAATTAGTGTGTCGGTTCGTCAGTGCATCGTCTATTTTA
ACGATCTagaattgtcaataaaagtgaacCTTAAGGCAGTACTTCCAATG
GCATCTTGCTAGCCTATGTCGGTTTAAATTGACATCGGCACGGAAGTGGC
CGAAATATAAGGGGTTAGACAGGTTATTAGGCAATAGATGTTATTCTGAT
GTCTTATCATAAACTTTTAAAAGGGTTTTCCCCTTAAGTTCGATAAGTGG
GGAGAGTACTTTCGggtcttgtttttgttttcaaaagcctcaaaaaattg
caatgctgCCATATACTTTTTATAGAATTCAGTTTATGCAATACATATAA
CTTATTATGTTTTTTAATCTTTCTTGACATTCGTGAGAGTTTATCCAAAT
AAATGTCAGACACTGACATCATCATCTTTGCCAATTTTACTGGGAATTTT
GATGATATATAATATGCGAGTGTTTAGTGAGTCATATTCACGGTCAtatt
tccatttcatcatggatattttaacatttttataaaaaatcatcctaaaa
tgtTTGTAACAGTTACTTCTAGGTTAGGGTCCAAACCTTACCTAAACTTA
ATTGCTTGCTGAGTACAGATTTAGAAATCAGACTATTTGTCTACTTGTCC
ACTACATATTTGGGCAAAAgaaagtattatcttttttttatgGCTCTGCT
TGAAATTGCCCTAATTTGTTGACAGCCGATGGGTTTTTTTACTCTTAAAG
ATCACTATTAAGTATGCGTTGGTCGAGTTTACAGTATCGTATTTCTCTTG
TCTGTGCATAGGGTATTTACAATATTTTGTTTCTCGGAAGATTGACTGAC
CAATACACTGTATGTTGACACTTGTCTTTTTTTTGGTGTCTTATTCCTTT
CAGTCTTTTATGATCATTCAAAACCTAATCATTTACATCTTATCGAATGA
CAACCATAGTCAAACTCCCACTCAGATAATAAATATTGATAAAACATGAG
TCTCAAGaggtttcaaatttttcagccCGCGATATTTGCATTGACAAAAT
CGTCAGAATTTGATTATGAAACTATACATCTCAGCGCTTCCTTTGCCCAA
CGCCACTCCTCATTTGAAAGCTAATAATATTTTAATGCCCGTCAAAAAAT
CCCGCAATCGACCGAGAATCTTATTTTTGTTGGCAAAAATGTCGTCAATA
AGCGACTTTTTTATCGTCTTATTTCGCCGACATTGTAAAAAATAACATTT
CTTTTTCTACAGGTTTCGTGACGTCCGGATTAACCTTCTTCTTCTTATCA
CTTTTGACGGGATTCTTCTTGTGGCAACTACTGACACCCGGAACAGCATA
CCGGTACTGGAAATGCCGGGATGGTTCTATACCGGATCATCAAGCAACAT
TTAAATATAATCCTGACCGATTCTCTTTTTCGGTATGTGTTGTAAGAAGC
ATTTTCATTTGGGGGgttgaagtttagtgacaccgcgagggcaaaccatg
gtttggcccgagggggggaattttgaaagtttgagctctatattgcttga
aaatgcactcaaagcAAAATCCtttagagaaaaacaacataaaaactttg
cattttacaaaataaacatatttgcaaaaattattgggggcatAGCTCCC
CTTGCCCCCCctccccagttgctacggcactgtgaTTAAAAAAGTCGATA
CTTCAAATTATGATAGACTTTTTCATGGAATCTGAGGTCCCGTATAAACG
TCTTCACCGgacatttattaatttttgaaccCCACCCCTTTTATTTGGTA
CCCGATACTATTCTGGACCTTTGAAAAAATGCTTTTGTATGAAAGTTAAG
CCTGCGGCAATTTTATTAATACTTCTGCGTTTTCTTCACTTTAAGTATCT
TGTCGGTTGTGTTTGGGCTAATTTTCCTCTTTTCTATGTTTTGTAGCTTG
AAGATGTGAATGGGATCGAATTTGATTTCAAGAAGCTGATGAAGAAGACA
GAACATTCACAATACTCAATGATGGATTCTAAAGGTTTGTTTACATGTCA
GTTTACCTGTTTATAAATGACACTTTTCGATCTGAAAGAAAGGTCTAAAA
GAGGTTAACAAAttgatattttacgtggatagcctgTTATTCTAGGCATT
TTAGACAGTTTTTCGATTGGCCGACTATCTCAGTTATCTATGACCTGAAC
TGATACATATAGCCCCTACTCTTGTCTCcagaatagacgggggggggggg
cccgaaaaagcaggggggggggaaaattttctaatttttaataggggggg
ggggggggaaaaggggggggggggggccgaataagcaggggggtaggaaa
attttctaaattctaataagcggggggggatggaataagagggggggggg
taatttgaagacatagtttttttaactgatatcaatttcaacaacaaaaa
agcaactttaacaaataaacacgtaaaataagaaccaatactaacggAGA
GGAACATTTTCACAAGTTTAAGGTCtttctacactgtaataaaatattga
attactCGAATTTAATTACAGGGAGGTCTTAATAAGGGtggggggatgga
tttttttttcgattaacaattagcggggggacgtctattcgggagacaag
agtaagccCCCCCACCCCAATATCGCCAGCGCTGAAAGGCTGAACAAAGG
TTCTACACTAACATCGGCgaaagttttaactttttttagctttttttggc
AATTAAGGttacatttttatgttttaaaacaTGCACGATTTCCTGATTCA
TTTTCATTCTTCTAATGTATAGCATACCCTGGCGTTCGTTATTACCTGAA
TGTAGACGTTTGTGCGTACGGCGGGACGCGTTCGACACAAGATATAACAA
CAGGTCAGAAAGTGGTATATGGCCCTGATGTATTCGCAGTTGACAAAGAT
TGCAAAGAAGCTTTTTATTTTGTCGAGTGGGAATTTAAATGGCGACAAAT
TTATTAGTCCAGATTTGTCAATTTCACGCATACCATTCACAACCCGTTGA
ATTTGACCTGTGTTTCTTAACTTTAT Coding sequence (CDS) from alignment at scaffold_244:165613..169988+ >TCONS_00054726 ID=TCONS_00054726|Name=TCONS_00054726|organism=Clytia hemisphaerica|type=CDS|length=3255bp|location=Sequence derived from alignment at scaffold_244:165613..169988+ (Clytia hemisphaerica)
CATGATATCAGTGACGATTCGTTAATTGGATACGCCTTTGAAGATCACGA
TGCCGCCCATCAACACCAGATTGGTTTCGTGAACGCTGGTGTTTCAGTGT
TAAACACAGCAAGTCATATTCTTCTGAACAAACGAATCAAGAAGCTTGAA
AATCATTGGGATAGACGAATCAGGGAGCTGACAAGAGCAAATACCAATTT
CAAACGTTGTTTCGTGACGTCCGGATTAACCTTCTTCTTCTTATCACTTT
TGACGGGATTCTTCTTGTGGCAACTACTGACACCCGGAACAGCATACCGG
TACTGGAAATGCCGGGATGGTTCTATACCGGATCATCAAGCAACATTTAA
ATATAATCCTGACCGATTCTCTTTTTCGCTTGAAGATGTGAATGGGATCG
AATTTGATTTCAAGAAGCTGATGAAGAAGACAGAACATTCACAATACTCA
ATGATGGATTCTAAAGCATACCCTGGCGTTCGTTATTACCTGAATGTAGA
CGTTTGTGCGTACGGCGGGACGCGTTCGACACAAGATATAACAACAGGTC
AGAAAGTGGTATATGGCCCTGATGTATTCGCAGTTGACAAAGATTGCAAA
GAAGCTTTTTATTTTGTCGAGTGGGAATTTAAATGGCGACAAATTTATTA
GCATGATATCAGTGACGATTCGTTAATTGGATACGCCTTTGAAGATCACG
ATGCCGCCCATCAACACCAGATTGGTTTCGTGAACGCTGGTGTTTCAGTG
TTAAACACAGCAAGTCATATTCTTCTGAACAAACGAATCAAGAAGCTTGA
AAATCATTGGGATAGACGAATCAGGGAGCTGACAAGAGCAAATACCAATT
TCAAACGTTGTTTCGTGACGTCCGGATTAACCTTCTTCTTCTTATCACTT
TTGACGGGATTCTTCTTGTGGCAACTACTGACACCCGGAACAGCATACCG
GTACTGGAAATGCCGGGATGGTTCTATACCGGATCATCAAGCAACATTTA
AATATAATCCTGACCGATTCTCTTTTTCGCTTGAAGATGTGAATGGGATC
GAATTTGATTTCAAGAAGCTGATGAAGAAGACAGAACATTCACAATACTC
AATGATGGATTCTAAAGCATACCCTGGCGTTCGTTATTACCTGAATGTAG
ACGTTTGTGCGTACGGCGGGACGCGTTCGACACAAGATATAACAACAGGT
CAGAAAGTGGTATATGGCCCTGATGTATTCGCAGTTGACAAAGATTGCAA
AGAAGCTTTTTATTTTGTCGAGTGGGAATTTAAATGGCGACAAATTTATT
AGCATGATATCAGTGACGATTCGTTAATTGGATACGCCTTTGAAGATCAC
GATGCCGCCCATCAACACCAGATTGGTTTCGTGAACGCTGGTGTTTCAGT
GTTAAACACAGCAAGTCATATTCTTCTGAACAAACGAATCAAGAAGCTTG
AAAATCATTGGGATAGACGAATCAGGGAGCTGACAAGAGCAAATACCAAT
TTCAAACGTTGTTTCGTGACGTCCGGATTAACCTTCTTCTTCTTATCACT
TTTGACGGGATTCTTCTTGTGGCAACTACTGACACCCGGAACAGCATACC
GGTACTGGAAATGCCGGGATGGTTCTATACCGGATCATCAAGCAACATTT
AAATATAATCCTGACCGATTCTCTTTTTCGCTTGAAGATGTGAATGGGAT
CGAATTTGATTTCAAGAAGCTGATGAAGAAGACAGAACATTCACAATACT
CAATGATGGATTCTAAAGCATACCCTGGCGTTCGTTATTACCTGAATGTA
GACGTTTGTGCGTACGGCGGGACGCGTTCGACACAAGATATAACAACAGG
TCAGAAAGTGGTATATGGCCCTGATGTATTCGCAGTTGACAAAGATTGCA
AAGAAGCTTTTTATTTTGTCGAGTGGGAATTTAAATGGCGACAAATTTAT
TAGCATGATATCAGTGACGATTCGTTAATTGGATACGCCTTTGAAGATCA
CGATGCCGCCCATCAACACCAGATTGGTTTCGTGAACGCTGGTGTTTCAG
TGTTAAACACAGCAAGTCATATTCTTCTGAACAAACGAATCAAGAAGCTT
GAAAATCATTGGGATAGACGAATCAGGGAGCTGACAAGAGCAAATACCAA
TTTCAAACGTTGTTTCGTGACGTCCGGATTAACCTTCTTCTTCTTATCAC
TTTTGACGGGATTCTTCTTGTGGCAACTACTGACACCCGGAACAGCATAC
CGGTACTGGAAATGCCGGGATGGTTCTATACCGGATCATCAAGCAACATT
TAAATATAATCCTGACCGATTCTCTTTTTCGCTTGAAGATGTGAATGGGA
TCGAATTTGATTTCAAGAAGCTGATGAAGAAGACAGAACATTCACAATAC
TCAATGATGGATTCTAAAGCATACCCTGGCGTTCGTTATTACCTGAATGT
AGACGTTTGTGCGTACGGCGGGACGCGTTCGACACAAGATATAACAACAG
GTCAGAAAGTGGTATATGGCCCTGATGTATTCGCAGTTGACAAAGATTGC
AAAGAAGCTTTTTATTTTGTCGAGTGGGAATTTAAATGGCGACAAATTTA
TTAGCATGATATCAGTGACGATTCGTTAATTGGATACGCCTTTGAAGATC
ACGATGCCGCCCATCAACACCAGATTGGTTTCGTGAACGCTGGTGTTTCA
GTGTTAAACACAGCAAGTCATATTCTTCTGAACAAACGAATCAAGAAGCT
TGAAAATCATTGGGATAGACGAATCAGGGAGCTGACAAGAGCAAATACCA
ATTTCAAACGTTGTTTCGTGACGTCCGGATTAACCTTCTTCTTCTTATCA
CTTTTGACGGGATTCTTCTTGTGGCAACTACTGACACCCGGAACAGCATA
CCGGTACTGGAAATGCCGGGATGGTTCTATACCGGATCATCAAGCAACAT
TTAAATATAATCCTGACCGATTCTCTTTTTCGCTTGAAGATGTGAATGGG
ATCGAATTTGATTTCAAGAAGCTGATGAAGAAGACAGAACATTCACAATA
CTCAATGATGGATTCTAAAGCATACCCTGGCGTTCGTTATTACCTGAATG
TAGACGTTTGTGCGTACGGCGGGACGCGTTCGACACAAGATATAACAACA
GGTCAGAAAGTGGTATATGGCCCTGATGTATTCGCAGTTGACAAAGATTG
CAAAGAAGCTTTTTATTTTGTCGAGTGGGAATTTAAATGGCGACAAATTT
ATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054726-exon-scaffold_244-1491911889:165613..165681 | TCONS_00054726-exon-scaffold_244-1491911889:165613..165681 | Clytia hemisphaerica | exon |
| TCONS_00054726-exon-scaffold_244-1510915933:165613..165681 | TCONS_00054726-exon-scaffold_244-1510915933:165613..165681 | Clytia hemisphaerica | exon |
| TCONS_00054726-exon-scaffold_244-1575043694:165613..165681 | TCONS_00054726-exon-scaffold_244-1575043694:165613..165681 | Clytia hemisphaerica | exon |
| TCONS_00054726-exon-scaffold_244-1491911889:166307..166445 | TCONS_00054726-exon-scaffold_244-1491911889:166307..166445 | Clytia hemisphaerica | exon |
| TCONS_00054726-exon-scaffold_244-1510915933:166307..166445 | TCONS_00054726-exon-scaffold_244-1510915933:166307..166445 | Clytia hemisphaerica | exon |
| TCONS_00054726-exon-scaffold_244-1575043694:166307..166445 | TCONS_00054726-exon-scaffold_244-1575043694:166307..166445 | Clytia hemisphaerica | exon |
| TCONS_00054726-exon-scaffold_244-1491911889:168175..168344 | TCONS_00054726-exon-scaffold_244-1491911889:168175..168344 | Clytia hemisphaerica | exon |
| TCONS_00054726-exon-scaffold_244-1510915933:168175..168344 | TCONS_00054726-exon-scaffold_244-1510915933:168175..168344 | Clytia hemisphaerica | exon |
| TCONS_00054726-exon-scaffold_244-1575043694:168175..168344 | TCONS_00054726-exon-scaffold_244-1575043694:168175..168344 | Clytia hemisphaerica | exon |
| TCONS_00054726-exon-scaffold_244-1491911889:168859..168946 | TCONS_00054726-exon-scaffold_244-1491911889:168859..168946 | Clytia hemisphaerica | exon |
| TCONS_00054726-exon-scaffold_244-1510915933:168859..168946 | TCONS_00054726-exon-scaffold_244-1510915933:168859..168946 | Clytia hemisphaerica | exon |
| TCONS_00054726-exon-scaffold_244-1575043694:168859..168946 | TCONS_00054726-exon-scaffold_244-1575043694:168859..168946 | Clytia hemisphaerica | exon |
| TCONS_00054726-exon-scaffold_244-1491911889:169735..169988 | TCONS_00054726-exon-scaffold_244-1491911889:169735..169988 | Clytia hemisphaerica | exon |
| TCONS_00054726-exon-scaffold_244-1510915933:169735..169988 | TCONS_00054726-exon-scaffold_244-1510915933:169735..169988 | Clytia hemisphaerica | exon |
| TCONS_00054726-exon-scaffold_244-1575043694:169735..169988 | TCONS_00054726-exon-scaffold_244-1575043694:169735..169988 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_244 | supercontig | scaffold_244:165613..169988 + |
Blast
The following BLAST results are available for this feature:
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