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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054747 ID=TCONS_00054747|Name=TCONS_00054747|organism=Clytia hemisphaerica|type=transcript|length=565bp
aatgtcattttttatgtaTCTTGATATTTTTTAGTAAATATTTAAATTAA
AATGTCATTATTTGGATCGTCAAATGCAAACAAGGGTTTTTCATTTGGAG
GTTCTACAACCACCACCACAACTGCAACCAATCCAAATAAAGATATCGAA
GTATCGCAACCTCCTTCTGATACTGTCAGTTGTTTAAAATTCAGTCCAAA
TGCAAATTTCCTCATTGCAAGTTCATGGGATAATAATGTGAGGTGCTGGG
AAGTACAAGGTAATGGTCAAACAGTACCGAAAGCTCAACAGTCTCACACA
AAACCAATTCTGTCTTGTTGTTGGCATGCTGATGGCAGTAAGGTTTTCAC
AGCCGGTTCAGACAACCAAGCCAAAGTGTGGGATCTAGCTTCAAATCAAT
CAGTAGTTTGTGCTCAGCATGATGCTCCAATTAAGACAATTCATTGGATC
CAAGGACAAAATTATCAGTGCTTAATGACAGGGAGTTGGGACAAGACGTT
GAAATTTTGGGATACTCGTTCTGCTTCACCCATGGCTACCATGCAAACTG
GTGAAAAAGTTTATT Run BLAST on NCBI transcript from alignment at scaffold_245:40262..42091+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054747 ID=TCONS_00054747|Name=TCONS_00054747|organism=Clytia hemisphaerica|type=transcript|length=1830bp|location=Sequence derived from alignment at scaffold_245:40262..42091+ (Clytia hemisphaerica)
aatgtcattttttatgtaTCTTGATATTTTTTAGTAAATATTTAAATTAA
AATGTCATTATTTGGATCGTCAAATGCAAACAAGGGTTTTTCATTTGGAG
GTTCTACAACCACCACCACAACTGCAACCAATCCAAATAAAGATATCGAA
GTATCGCAACCTCCTTCTGATACTGTCAGTTGTTTAAAATTCAGTCCAAA
TGCAAATTTCCTCATTGCAAGTTCATGGGATAATAATGTAAGTCCTTAAA
TGTATTTaataattgattttgaaataaaaaatgcttagaccattttcaga
cattacggttccgtatcgtttcaaaacgaaacggttccgaaacaggtgtg
aacgtcaaaaaagaagacgttacaaagcaaaattGATTGAAACGGTTTCg
ttccactattttcatcggaacgaaACTGCTCTGTTTTCTTGTTCTGAAAC
GCTctgaaaccaatatgaacactcgatccgtaacgaaaaccATACTGGAG
GGATACGAAactgtaacgtctgaacatggtcttagttTCGTTCTTAATAA
GTTACCCCTAGATTACCCAGATGTATACCCAGTATCTCATGTAGTCCTAA
ATgtgtcattttttgtttttttctacttGTGCTTTATTGTTTTCAGGTGA
GGTGCTGGGAAGTACAAGGTAATGGTCAAACAGTACCGAAAGCTCAACAG
TCTCACACAAAACCAATTCTGTCTTGTTGTTGGCATGCTGTAAGTAACTC
GAtattggaaaattttaacagTCAATTGTTTAATATTTATCATTTCAATA
TTCATTAGAAACACCTAATGATTCTTTCGTCTACGCAAAAAGGATTAAtt
caatttcacaatttttttatttttgatgggCAGAATTCGCTTGAAATTAG
TAATTAAAATGCCTTTGAGTgataattttaatatttaaatctgaTAATTT
GACACAAAATTTATGAAATCATCAAAGTGTCATTTTTTTAGGTATgggga
aaaatggaaaatttgaaatttgataggggataaaaaagaggggggaatgg
agaaaaattggattttaagTAGGGGGAACCAACCtgggaggacactatga
ataAGTCTAATTTATTTTACTGAAATTTCATTCTCTAAAGTATTCTTCAT
ATTTGTATGACCTGTTTCGCATTTCTATCTTCATTTGAAATTGTAGGATG
GCAGTAAGGTTTTCACAGCCGGTTCAGACAACCAAGCCAAAGTGTGGGAT
CTAGCTTCAAATCAATCAGTAGTTTGTGCTCAGGTAAGTAAATCGCACCA
GTCCTGCTACcttaaagaaagaattttttgcaggaacaaattttcgcaga
acaaatttttgtggaatttgATTTCGctgttttttgacaaatccgcgaaa
ttaaattctgcgaaacacgaatattctcaTGATTGGAAAAAAACACCTAT
ACctataaaattggtctttttagggcaaaataggacatattttaaacaaa
aaatcctcTTAACCGCGAAAATagattccgcgaaaatttcttcccgcaaa
aatttcttcccttaaggtactcaTAATTTTGAAGACCCATGTTAAATATA
AAGTGCAATTTTGATTTAATCGTTTCTTTGTGTCAAAGAATCGTGCCAAA
TATATACTGATCCTTCTGAATTACATTTTCAGCATGATGCTCCAATTAAG
ACAATTCATTGGATCCAAGGACAAAATTATCAGTGCTTAATGACAGGGAG
TTGGGACAAGACGTTGAAATTTTGGGATACTCGTTCTGCTTCACCCATGG
CTACCATGCAAACTGGTGAAAAAGTTTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054747-exon-scaffold_245-1491911889:40262..40498 | TCONS_00054747-exon-scaffold_245-1491911889:40262..40498 | Clytia hemisphaerica | exon |
| TCONS_00054747-exon-scaffold_245-1510915933:40262..40498 | TCONS_00054747-exon-scaffold_245-1510915933:40262..40498 | Clytia hemisphaerica | exon |
| TCONS_00054747-exon-scaffold_245-1575043694:40262..40498 | TCONS_00054747-exon-scaffold_245-1575043694:40262..40498 | Clytia hemisphaerica | exon |
| TCONS_00054747-exon-scaffold_245-1491911889:40908..41000 | TCONS_00054747-exon-scaffold_245-1491911889:40908..41000 | Clytia hemisphaerica | exon |
| TCONS_00054747-exon-scaffold_245-1510915933:40908..41000 | TCONS_00054747-exon-scaffold_245-1510915933:40908..41000 | Clytia hemisphaerica | exon |
| TCONS_00054747-exon-scaffold_245-1575043694:40908..41000 | TCONS_00054747-exon-scaffold_245-1575043694:40908..41000 | Clytia hemisphaerica | exon |
| TCONS_00054747-exon-scaffold_245-1491911889:41458..41544 | TCONS_00054747-exon-scaffold_245-1491911889:41458..41544 | Clytia hemisphaerica | exon |
| TCONS_00054747-exon-scaffold_245-1510915933:41458..41544 | TCONS_00054747-exon-scaffold_245-1510915933:41458..41544 | Clytia hemisphaerica | exon |
| TCONS_00054747-exon-scaffold_245-1575043694:41458..41544 | TCONS_00054747-exon-scaffold_245-1575043694:41458..41544 | Clytia hemisphaerica | exon |
| TCONS_00054747-exon-scaffold_245-1491911889:41944..42091 | TCONS_00054747-exon-scaffold_245-1491911889:41944..42091 | Clytia hemisphaerica | exon |
| TCONS_00054747-exon-scaffold_245-1510915933:41944..42091 | TCONS_00054747-exon-scaffold_245-1510915933:41944..42091 | Clytia hemisphaerica | exon |
| TCONS_00054747-exon-scaffold_245-1575043694:41944..42091 | TCONS_00054747-exon-scaffold_245-1575043694:41944..42091 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:40262..42091 + |
Blast
BLAST of TCONS_00054747 vs. Swiss-Prot (Human)
Match: RAE1L (mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 5.402e-68 Identity = 106/177 (59.89%), Postives = 130/177 (73.45%), Query Frame = 1
Query: 52 MSLFGSSNANKGFSFGGSX---XXXXXXXNPNKDIEVSQPPSDTVSCLKFSPN---ANFLIASSWDNNVRCWEVQGNGQTVPKAQQSHTKPILSCCWHADGSKVFTAGSDNQAKVWDLASNQSVVCAQHDAPIKTIHWIQGQNYQCLMTGSWDKTLKFWDTRSASPMATMQTGEKVY 564
MSLFG+++ GF G++ + TT NP KDIEV+ P D++ CL FSP NFLIA SW N+VRCWEVQ +GQT+PKAQQ HT P+L CW DGSKVFTA D AK+WDL+SNQ++ AQHDAP+KTIHWI+ NY C+MTGSWDKTLKFWDTRS++PM +Q E+ Y
Sbjct: 1 MSLFGTTS---GFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY 174
The following BLAST results are available for this feature:
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